View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20738_low_13 (Length: 203)
Name: NF20738_low_13
Description: NF20738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20738_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 125; Significance: 1e-64; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 59 - 183
Target Start/End: Complemental strand, 390380 - 390256
Alignment:
| Q |
59 |
actaacctgggtgaaaacaaggttaacaagataggaaacaaactgtccaccggtgatcatgaggacattagtgctgactaatgagcctctgatttcagag |
158 |
Q |
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| T |
390380 |
actaacctgggtgaaaacaaggttaacaagataggaaacaaactgtccaccggtgatcatgaggacattagtgctgactaatgagcctctgatttcagag |
390281 |
T |
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| Q |
159 |
ggtgcgacttctgcaatgtagacag |
183 |
Q |
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| T |
390280 |
ggtgcgacttctgcaatgtagacag |
390256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 390447 - 390411
Alignment:
| Q |
21 |
aaaatgaaacatgttgatagaaaaagcacacataatc |
57 |
Q |
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| T |
390447 |
aaaatgaaacatgttgatagaaaaggcacacataatc |
390411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 181
Target Start/End: Original strand, 52771714 - 52771793
Alignment:
| Q |
102 |
tgtccaccggtgatcatgaggacattagtgctgactaatgagcctctgatttcagagggtgcgacttctgcaatgtagac |
181 |
Q |
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| T |
52771714 |
tgtccactggtgatcatgagggaattagtactgactaatgaacctctgatttcggaaggtgatgcttcggcaatgtagac |
52771793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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