View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20738_low_2 (Length: 599)

Name: NF20738_low_2
Description: NF20738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20738_low_2
NF20738_low_2
[»] chr7 (4 HSPs)
chr7 (8-366)||(9416299-9416665)
chr7 (512-582)||(9417209-9417279)
chr7 (512-566)||(38735919-38735973)
chr7 (398-447)||(9417095-9417144)
[»] chr3 (3 HSPs)
chr3 (52-156)||(1460719-1460819)
chr3 (512-562)||(46690626-46690676)
chr3 (513-582)||(50293621-50293690)
[»] chr1 (3 HSPs)
chr1 (512-582)||(42106998-42107068)
chr1 (512-582)||(8245448-8245518)
chr1 (512-553)||(28867155-28867196)
[»] chr5 (5 HSPs)
chr5 (512-583)||(2858216-2858287)
chr5 (512-582)||(2846395-2846465)
chr5 (512-582)||(41982536-41982606)
chr5 (512-562)||(4650347-4650397)
chr5 (512-564)||(38734698-38734750)
[»] chr2 (2 HSPs)
chr2 (512-582)||(6407904-6407974)
chr2 (515-554)||(39324794-39324833)
[»] chr8 (2 HSPs)
chr8 (518-582)||(6924211-6924275)
chr8 (515-582)||(39141855-39141922)
[»] scaffold0118 (1 HSPs)
scaffold0118 (297-354)||(9554-9611)
[»] chr4 (1 HSPs)
chr4 (515-566)||(27764034-27764085)


Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 8 - 366
Target Start/End: Original strand, 9416299 - 9416665
Alignment:
Q  8 agattatacttgttggcttaggccaggggttttat---aacacta--atgagaagtaaaaacgtatgacaca---ctaaaggaaataaagtggaattagt 99  Q
    |||| |||||||||||| |||||||||||||||||   |||||||  |||||||||||||||||||||||||   |||||||||||||||||||||||||    
T  9416299 agatcatacttgttggcgtaggccaggggttttattataacactataatgagaagtaaaaacgtatgacacatgactaaaggaaataaagtggaattagt 9416398  T
Q  100 aggaaattaaagtggtggttatataatgtggaggacaaaaacaaaatgcagtattaaggagatattaatagtcaacccatttgatttgtagcaaggtgac 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9416399 aggaaattaaagtggtggttatataatgtggaggacaaaaacaaaatgcagtattaaggagatattaatagtcaacccatttgatttgtagcaaggtgac 9416498  T
Q  200 attgaaattgtgtaagggaaggaaggataaatggtgtgtgaatcaaaattgatacctatgaattcaacgactatcagtgaaatgcacttggttgcaatta 299  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9416499 gttgaaattgtgtaagggaaggaaggataaatggtgtgtgaatcaaaattgatacctataaattcaacgactatcagtgaaatgcacttggttgcaatta 9416598  T
Q  300 ttataagttttgattcagcacctatatcacttttcattcttgccaaaaatggttatatgtatgatgt 366  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  9416599 ttataagttttgattcagcacctatattacttttcattcttgccaaaaatggttatatgtatgatgt 9416665  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 512 - 582
Target Start/End: Original strand, 9417209 - 9417279
Alignment:
Q  512 atgttgattgatatgatctaattatttttgctttaaatttttccgtttgatgtgactgtatccaaatattt 582  Q
    ||||||||| ||||||||||||||||||| |||||||||||||| |||||||| |||||  ||||||||||    
T  9417209 atgttgattaatatgatctaattatttttactttaaatttttccatttgatgtaactgtgcccaaatattt 9417279  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 512 - 566
Target Start/End: Original strand, 38735919 - 38735973
Alignment:
Q  512 atgttgattgatatgatctaattatttttgctttaaatttttccgtttgatgtga 566  Q
    |||||||||||| |||| |||||||||||||||||||||||| | ||||||||||    
T  38735919 atgttgattgatgtgatttaattatttttgctttaaattttttcatttgatgtga 38735973  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 398 - 447
Target Start/End: Original strand, 9417095 - 9417144
Alignment:
Q  398 cgtaaggatgattagtttatcaaaagaacctttttcatcaacacaaccac 447  Q
    ||||||||| ||||| |||||||||||||||||||||||| |||||||||    
T  9417095 cgtaaggataattagcttatcaaaagaacctttttcatcatcacaaccac 9417144  T

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Target: chr3 (Bit Score: 60; Significance: 3e-25; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 52 - 156
Target Start/End: Complemental strand, 1460819 - 1460719
Alignment:
Q  52 gagaagtaaaaacgtatgacacactaaaggaaataaagtggaattagtaggaaattaaagtggtggttatataatgtggaggacaaaaacaaaatgcagt 151  Q
    ||||||||||| || || ||||||||||||||||||||||||||||||||||||||||| ||||| ||||    |||||||||||||||| |||||||||    
T  1460819 gagaagtaaaaccgcattacacactaaaggaaataaagtggaattagtaggaaattaaactggtgattat----tgtggaggacaaaaacgaaatgcagt 1460724  T
Q  152 attaa 156  Q
     ||||    
T  1460723 tttaa 1460719  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 512 - 562
Target Start/End: Complemental strand, 46690676 - 46690626
Alignment:
Q  512 atgttgattgatatgatctaattatttttgctttaaatttttccgtttgat 562  Q
    |||||||||||||| ||||||||||||||| ||||||||||| | ||||||    
T  46690676 atgttgattgatatcatctaattatttttgttttaaattttttcatttgat 46690626  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 513 - 582
Target Start/End: Complemental strand, 50293690 - 50293621
Alignment:
Q  513 tgttgattgatatgatctaattatttttgctttaaatttttccgtttgatgtgactgtatccaaatattt 582  Q
    ||||||||||| |||| |||||||||||| || |||||||||  |||||| ||| |||| || |||||||    
T  50293690 tgttgattgatgtgatttaattatttttgtttaaaatttttctatttgatatgagtgtacccgaatattt 50293621  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 512 - 582
Target Start/End: Complemental strand, 42107068 - 42106998
Alignment:
Q  512 atgttgattgatatgatctaattatttttgctttaaatttttccgtttgatgtgactgtatccaaatattt 582  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||| |||||||||| ||| |||||||||||    
T  42107068 atgttaattgatgtgatttaattatttttgttttaaatttttccatttgatgtgagtgtgtccaaatattt 42106998  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 512 - 582
Target Start/End: Original strand, 8245448 - 8245518
Alignment:
Q  512 atgttgattgatatgatctaattatttttgctttaaatttttccgtttgatgtgactgtatccaaatattt 582  Q
    |||||||||||| |||| |||||||||||| || |||||||||| |||||||||| ||| || ||||||||    
T  8245448 atgttgattgatgtgatttaattatttttgtttaaaatttttccatttgatgtgagtgtttctaaatattt 8245518  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 512 - 553
Target Start/End: Complemental strand, 28867196 - 28867155
Alignment:
Q  512 atgttgattgatatgatctaattatttttgctttaaattttt 553  Q
    ||||||||||||||||| |||||||||||  |||||||||||    
T  28867196 atgttgattgatatgatttaattatttttattttaaattttt 28867155  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 512 - 583
Target Start/End: Original strand, 2858216 - 2858287
Alignment:
Q  512 atgttgattgatatgatctaattatttttgctttaaatttttccgtttgatgtgactgtatccaaatatttt 583  Q
    |||||||||||| ||||||| ||||||||| ||||||||||||| ||||||||||  |  ||||||||||||    
T  2858216 atgttgattgatgtgatctatttatttttgttttaaatttttccatttgatgtgagcgcgtccaaatatttt 2858287  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 512 - 582
Target Start/End: Original strand, 2846395 - 2846465
Alignment:
Q  512 atgttgattgatatgatctaattatttttgctttaaatttttccgtttgatgtgactgtatccaaatattt 582  Q
    |||||||||||  ||||||||||||||||| |||||| |||||| |||||||||| ||  |||||||||||    
T  2846395 atgttgattgaggtgatctaattatttttgttttaaaattttccatttgatgtgagtgcgtccaaatattt 2846465  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 512 - 582
Target Start/End: Original strand, 41982536 - 41982606
Alignment:
Q  512 atgttgattgatatgatctaattatttttgctttaaatttttccgtttgatgtgactgtatccaaatattt 582  Q
    ||||||||||||  |||||||||||||||| ||||||||||| | |||||||||| |||  ||||||||||    
T  41982536 atgttgattgatgggatctaattatttttgttttaaattttttcatttgatgtgagtgtgcccaaatattt 41982606  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 512 - 562
Target Start/End: Original strand, 4650347 - 4650397
Alignment:
Q  512 atgttgattgatatgatctaattatttttgctttaaatttttccgtttgat 562  Q
    |||||||||||| ||||||||||||||||| ||||||||||| | ||||||    
T  4650347 atgttgattgatgtgatctaattatttttgttttaaattttttcatttgat 4650397  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 512 - 564
Target Start/End: Original strand, 38734698 - 38734750
Alignment:
Q  512 atgttgattgatatgatctaattatttttgctttaaatttttccgtttgatgt 564  Q
    |||||||||||| ||||||||||||||||| |||||| |||||  ||||||||    
T  38734698 atgttgattgatgtgatctaattatttttgttttaaacttttctatttgatgt 38734750  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 512 - 582
Target Start/End: Complemental strand, 6407974 - 6407904
Alignment:
Q  512 atgttgattgatatgatctaattatttttgctttaaatttttccgtttgatgtgactgtatccaaatattt 582  Q
    |||||||||||| |||| |||||||||||| || |||||||||| |||||||||| ||| || ||||||||    
T  6407974 atgttgattgatgtgatttaattatttttgtttaaaatttttccatttgatgtgaatgtttctaaatattt 6407904  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 515 - 554
Target Start/End: Complemental strand, 39324833 - 39324794
Alignment:
Q  515 ttgattgatatgatctaattatttttgctttaaatttttc 554  Q
    ||||||||| ||||||||||||||||| ||||||||||||    
T  39324833 ttgattgatgtgatctaattatttttgttttaaatttttc 39324794  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 518 - 582
Target Start/End: Original strand, 6924211 - 6924275
Alignment:
Q  518 attgatatgatctaattatttttgctttaaatttttccgtttgatgtgactgtatccaaatattt 582  Q
    |||||||||||||||||||||||| ||||| ||||||  |||||||||| |||  ||||||||||    
T  6924211 attgatatgatctaattatttttgttttaattttttctatttgatgtgagtgtgcccaaatattt 6924275  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 515 - 582
Target Start/End: Complemental strand, 39141922 - 39141855
Alignment:
Q  515 ttgattgatatgatctaattatttttgctttaaatttttccgtttgatgtgactgtatccaaatattt 582  Q
    |||||||||||||| |||||||||||| ||||||||||| | |||||| | | ||| |||||||||||    
T  39141922 ttgattgatatgatttaattatttttgttttaaattttttcatttgatataaatgtgtccaaatattt 39141855  T

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Target: scaffold0118 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 297 - 354
Target Start/End: Complemental strand, 9611 - 9554
Alignment:
Q  297 ttattataagttttgattcagcacctatatcacttttcattcttgccaaaaatggtta 354  Q
    ||||||||||||||||| || |||||||   ||||||| |||||||||||||||||||    
T  9611 ttattataagttttgatccatcacctatgctacttttccttcttgccaaaaatggtta 9554  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 515 - 566
Target Start/End: Complemental strand, 27764085 - 27764034
Alignment:
Q  515 ttgattgatatgatctaattatttttgctttaaatttttccgtttgatgtga 566  Q
    ||||||||| |||| |||||||||||| ||||||||||| | ||||||||||    
T  27764085 ttgattgatgtgatttaattatttttgttttaaatttttgcatttgatgtga 27764034  T

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