View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20738_low_4 (Length: 485)
Name: NF20738_low_4
Description: NF20738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20738_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 406; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Complemental strand, 14563675 - 14563210
Alignment:
| Q |
1 |
aatttatatatttgtttccctcttacaatccctcaataattttaactctcaaggtgttttctaccttagaatctccttccaaaaggcgtcaaccaatttc |
100 |
Q |
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| T |
14563675 |
aatttatatatttgtttccctcttacaatccctcaataattttaactctcaaggtgttttctaatttagaatctccttccaaaaggcgtcaaccaatttc |
14563576 |
T |
|
| Q |
101 |
aacaaatcacnnnnnnnnattaaatgcgattacacaaaaaagtgagaaaaagcttaaatagaagtcaaaaactcgtgtcacgcggacgacacctgactag |
200 |
Q |
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| T |
14563575 |
aacgaatcacttttttt-attaaatgcgattacacaaaaaaatgagaaaaagcttaaatagaagtcaaaaactcgtgtcacgcggatgacacctgactag |
14563477 |
T |
|
| Q |
201 |
acacgcctaacacataataatatttggacacactcaacaattttttaatacatttttcattaaacaatcagattctactaaagatttgcttatacaaaat |
300 |
Q |
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| T |
14563476 |
acacgcctaacacataataatttttggacacactcaacaattttttaatacatttttcattaaacaatcagattctactaaagatttgcttatacaaaat |
14563377 |
T |
|
| Q |
301 |
gagattataggagatttcaacattgtattgtaatcttgactttacaccaattgacttatatactatgaattgtgctttcacttattttgatttaactcac |
400 |
Q |
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| T |
14563376 |
gagattctaggagatttcaacattgtattgtaatcttgtctttacaccaattgacttatatactatgaattgtgctttcacttattttgatttaactcac |
14563277 |
T |
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| Q |
401 |
cttattggtggattatacaatggttgttatgttggaagctaatgatagtgcgtttagttgctcctta |
467 |
Q |
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| T |
14563276 |
cttattggtggattatacaatggttgttatgttggaagctaatgatagtgcgtttagttgctcctta |
14563210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 384
Target Start/End: Complemental strand, 14562077 - 14561957
Alignment:
| Q |
268 |
tcagattctactaaagatttgcttatacaaaatgagattataggagatttcaac----attgtattgtaa--tcttgactttacaccaattgacttatat |
361 |
Q |
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||||||||||| |||||| ||||||||||||||||| ||||| |||||||||| |||||||||||| | ||| | |||||||||| ||||||||| |
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| T |
14562077 |
tcagattctacgtaagattagcttatacaaaatgagaatatagaagatttcaacaaatattgtattgtaaccttttgtcattacaccaatagacttatat |
14561978 |
T |
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| Q |
362 |
actatgaattgtgctttcactta |
384 |
Q |
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|||| ||| |||||||||||| |
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| T |
14561977 |
--tatgcattatgctttcactta |
14561957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 399 - 438
Target Start/End: Complemental strand, 14561957 - 14561918
Alignment:
| Q |
399 |
accttattggtggattatacaatggttgttatgttggaag |
438 |
Q |
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| T |
14561957 |
accttattggtggattatacaatggttgttttgttggaag |
14561918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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