View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20738_low_6 (Length: 315)

Name: NF20738_low_6
Description: NF20738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20738_low_6
NF20738_low_6
[»] chr6 (7 HSPs)
chr6 (56-167)||(8701272-8701386)
chr6 (62-167)||(12306947-12307055)
chr6 (61-167)||(605354-605462)
chr6 (92-167)||(7727047-7727122)
chr6 (18-63)||(5702830-5702875)
chr6 (89-152)||(604984-605047)
chr6 (90-153)||(8700896-8700959)
[»] chr2 (6 HSPs)
chr2 (63-165)||(30674068-30674173)
chr2 (60-167)||(9074978-9075088)
chr2 (51-167)||(9914586-9914704)
chr2 (101-153)||(9914211-9914263)
chr2 (68-153)||(9074581-9074668)
chr2 (110-169)||(26556638-26556697)
[»] chr8 (6 HSPs)
chr8 (63-167)||(187055-187162)
chr8 (88-167)||(308683-308762)
chr8 (100-166)||(25276812-25276878)
chr8 (110-169)||(16063627-16063686)
chr8 (68-153)||(308287-308375)
chr8 (68-139)||(186657-186731)
[»] chr5 (6 HSPs)
chr5 (61-167)||(14394353-14394461)
chr5 (83-167)||(25672639-25672723)
chr5 (61-167)||(20983851-20983960)
chr5 (68-153)||(20983526-20983614)
chr5 (110-169)||(8107592-8107651)
chr5 (90-139)||(14393983-14394032)
[»] chr4 (7 HSPs)
chr4 (62-167)||(43013139-43013247)
chr4 (87-167)||(54714520-54714600)
chr4 (60-167)||(23643790-23643896)
chr4 (68-153)||(43012737-43012825)
chr4 (87-153)||(12639772-12639838)
chr4 (57-118)||(12629807-12629870)
chr4 (89-153)||(54714918-54714982)
[»] chr1 (2 HSPs)
chr1 (59-150)||(25182407-25182501)
chr1 (88-167)||(40889154-40889233)
[»] chr7 (10 HSPs)
chr7 (84-167)||(15578132-15578215)
chr7 (91-176)||(32741482-32741567)
chr7 (86-167)||(38916048-38916129)
chr7 (62-167)||(27230847-27230955)
chr7 (91-167)||(28750587-28750663)
chr7 (68-153)||(38916437-38916524)
chr7 (92-152)||(41539443-41539503)
chr7 (86-153)||(28750971-28751038)
chr7 (112-169)||(38478431-38478488)
chr7 (105-153)||(27230485-27230533)
[»] chr3 (5 HSPs)
chr3 (87-167)||(53153501-53153581)
chr3 (87-139)||(785426-785478)
chr3 (111-167)||(30384736-30384792)
chr3 (86-153)||(785815-785882)
chr3 (112-169)||(3735726-3735783)


Alignment Details
Target: chr6 (Bit Score: 89; Significance: 7e-43; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 56 - 167
Target Start/End: Complemental strand, 8701386 - 8701272
Alignment:
Q  56 taaaaagggtgctgctaaccggtgccc---ggacactggataagaaataataaataggcaataaataaatgaatctcaattgatttacttaaattaaagt 152  Q
    |||| ||||||||||||||||||||||   || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8701386 taaatagggtgctgctaaccggtgcccccggggcactggttaagaaataataaataggcaataaataaatgaatctcaattgatttacttaaattaaagt 8701287  T
Q  153 gatatataagtcaac 167  Q
    |||||||||||||||    
T  8701286 gatatataagtcaac 8701272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 62 - 167
Target Start/End: Original strand, 12306947 - 12307055
Alignment:
Q  62 gggtgctgctaaccggtgccc---ggacactggataagaaataataaataggcaataaataaatgaatctcaattgatttacttaaattaaagtgatata 158  Q
    ||||||| |||||||||||||   || |||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||| |||    
T  12306947 gggtgctactaaccggtgcccccggggcactggataagaaataataaatagacaataaataaatgaatcttaattgatttacctaaattaaagtgagata 12307046  T
Q  159 taagtcaac 167  Q
    |||||||||    
T  12307047 taagtcaac 12307055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 61 - 167
Target Start/End: Complemental strand, 605462 - 605354
Alignment:
Q  61 agggtgctgctaaccggtgccc--ggacactggataagaaataataaataggcaataaataaatgaatctcaattgatttacttaaattaaagtgatata 158  Q
    ||||||||||||||| || |||  ||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||| |||    
T  605462 agggtgctgctaaccagtaccccagggtactggataagaaataataaataggcaataaataaatgaatctcaattggtttacctaaattaaattgagata 605363  T
Q  159 taagtcaac 167  Q
    ||| |||||    
T  605362 taaatcaac 605354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 92 - 167
Target Start/End: Original strand, 7727047 - 7727122
Alignment:
Q  92 ataagaaataataaataggcaataaataaatgaatctcaattgatttacttaaattaaagtgatatataagtcaac 167  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||  |||||| |||||    
T  7727047 ataagaaataataaataggtaataaataaatggatctcaattgatttacctaaattaaagtgcgatataaatcaac 7727122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 5702875 - 5702830
Alignment:
Q  18 ttattgggttatctatatttctgaaattattaatattttaaaaagg 63  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  5702875 ttattgggttatctaaatttctgaaattattaatattttaaaaagg 5702830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 152
Target Start/End: Original strand, 604984 - 605047
Alignment:
Q  89 tggataagaaataataaataggcaataaataaatgaatctcaattgatttacttaaattaaagt 152  Q
    |||||||| || ||||||||||||||||||||||| |||||| ||||||||| | |||||||||    
T  604984 tggataaggaacaataaataggcaataaataaatggatctcacttgatttaccttaattaaagt 605047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 153
Target Start/End: Original strand, 8700896 - 8700959
Alignment:
Q  90 ggataagaaataataaataggcaataaataaatgaatctcaattgatttacttaaattaaagtg 153  Q
    ||||||| || ||||||||||||||||||| ||| |||||| ||||||||| | ||||||||||    
T  8700896 ggataaggaacaataaataggcaataaatagatggatctcacttgatttaccttaattaaagtg 8700959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 9e-33; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 63 - 165
Target Start/End: Original strand, 30674068 - 30674173
Alignment:
Q  63 ggtgctgctaaccggtgccc---ggacactggataagaaataataaataggcaataaataaatgaatctcaattgatttacttaaattaaagtgatatat 159  Q
    |||| |||||||||||||||   ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||    
T  30674068 ggtgttgctaaccggtgcccccgggacactggataaaaaataataaataggcaataaataaatgaatctcaattgttttacataaattaaagtgagatat 30674167  T
Q  160 aagtca 165  Q
    ||||||    
T  30674168 aagtca 30674173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 60 - 167
Target Start/End: Complemental strand, 9075088 - 9074978
Alignment:
Q  60 aagggtgctgctaaccggtgccc---ggacactggataagaaataataaataggcaataaataaatgaatctcaattgatttacttaaattaaagtgata 156  Q
    |||||||||||||| | ||||||   || |||| ||||||||||||||||||||||||||||||||| || ||||||| ||||| ||||||||||||| |    
T  9075088 aagggtgctgctaatcagtgccctcggggcactagataagaaataataaataggcaataaataaatggatttcaattggtttacctaaattaaagtgaga 9074989  T
Q  157 tataagtcaac 167  Q
    ||||| |||||    
T  9074988 tataaatcaac 9074978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 51 - 167
Target Start/End: Complemental strand, 9914704 - 9914586
Alignment:
Q  51 tattttaaaaagggtgctgctaaccggtgccc--gga-cactggataagaaataataaataggcaataaataaatgaatctcaattgatttacttaaatt 147  Q
    |||||| || ||||||||||||||| ||||||  ||| ||||| |||| ||||||||||||| |||||| ||||||||||||||||| ||||| ||||||    
T  9914704 tatttttaatagggtgctgctaaccagtgcccccggagcactgaataaaaaataataaatagacaataa-taaatgaatctcaattggtttacctaaatt 9914606  T
Q  148 aaagtgatatataagtcaac 167  Q
    ||||||| ||||||||||||    
T  9914605 aaagtgagatataagtcaac 9914586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 9914211 - 9914263
Alignment:
Q  101 aataaataggcaataaataaatgaatctcaattgatttacttaaattaaagtg 153  Q
    |||||||||| ||||||||||||||||||| ||||||||||| ||||||||||    
T  9914211 aataaataggtaataaataaatgaatctcacttgatttactttaattaaagtg 9914263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 153
Target Start/End: Original strand, 9074581 - 9074668
Alignment:
Q  68 tgctaaccggtgccc--ggacactggataagaaataataaataggcaataaataaatgaatctcaattgatttacttaaattaaagtg 153  Q
    |||||||||||||||  || ||| ||||||  || ||||||||| ||||||||||||| |||||| ||| ||||| | ||||||||||    
T  9074581 tgctaaccggtgcccccgggcaccggataaagaacaataaatagacaataaataaatggatctcacttggtttaccttaattaaagtg 9074668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 110 - 169
Target Start/End: Original strand, 26556638 - 26556697
Alignment:
Q  110 gcaataaataaatgaatctcaattgatttacttaaattaaagtgatatataagtcaacaa 169  Q
    |||||||||| |||||||||||||||||||| | ||||||  ||| | ||||||||||||    
T  26556638 gcaataaatagatgaatctcaattgatttacctcaattaatttgagaaataagtcaacaa 26556697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 63 - 167
Target Start/End: Complemental strand, 187162 - 187055
Alignment:
Q  63 ggtgctgctaaccggtgccc---ggacactggataagaaataataaataggcaataaataaatgaatctcaattgatttacttaaattaaagtgatatat 159  Q
    ||||||||||||| ||||||   || ||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||| ||||    
T  187162 ggtgctgctaaccagtgccccgggggcactggataagaaataataaataggcaataaataaatgaatctcaattagtttacctaaattaaagtgagatat 187063  T
Q  160 aagtcaac 167  Q
    ||||||||    
T  187062 aagtcaac 187055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 88 - 167
Target Start/End: Complemental strand, 308762 - 308683
Alignment:
Q  88 ctggataagaaataataaataggcaataaataaatgaatctcaattgatttacttaaattaaagtgatatataagtcaac 167  Q
    |||||||| ||||||||||||||||||| |||||| ||||||||||| |||| |||||||||| ||| |||||| |||||    
T  308762 ctggataaaaaataataaataggcaatatataaataaatctcaattggtttatttaaattaaaatgagatataaatcaac 308683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 100 - 166
Target Start/End: Original strand, 25276812 - 25276878
Alignment:
Q  100 taataaataggcaataaataaatgaatctcaattgatttacttaaattaaagtgatatataagtcaa 166  Q
    ||||||||||||||||||||||||||| ||||||| ||||  ||||||||||||| |||||||||||    
T  25276812 taataaataggcaataaataaatgaatatcaattggtttatctaaattaaagtgagatataagtcaa 25276878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 110 - 169
Target Start/End: Complemental strand, 16063686 - 16063627
Alignment:
Q  110 gcaataaataaatgaatctcaattgatttacttaaattaaagtgatatataagtcaacaa 169  Q
    |||||||||| |||||||||||||||||||| | ||||||  ||| | ||||||||||||    
T  16063686 gcaataaatagatgaatctcaattgatttacctcaattaatttgagaaataagtcaacaa 16063627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 153
Target Start/End: Original strand, 308287 - 308375
Alignment:
Q  68 tgctaaccggtgccc---ggacactggataagaaataataaataggcaataaataaatgaatctcaattgatttacttaaattaaagtg 153  Q
    |||||||||||||||   || ||| ||||||  || ||||||||||||||||||||||| |||||| ||  ||||| | ||||||||||    
T  308287 tgctaaccggtgccccaggggcaccggataatgaacaataaataggcaataaataaatggatctcacttagtttaccttaattaaagtg 308375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 139
Target Start/End: Original strand, 186657 - 186731
Alignment:
Q  68 tgctaaccggtgccc---ggacactggataagaaataataaataggcaataaataaatgaatctcaattgattta 139  Q
    |||||||||||||||   |||||  ||||||| || |||||||||  |||||||||||| |||||| ||||||||    
T  186657 tgctaaccggtgcccccgggacatcggataaggaacaataaatagctaataaataaatggatctcacttgattta 186731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 61 - 167
Target Start/End: Complemental strand, 14394461 - 14394353
Alignment:
Q  61 agggtgctgctaaccggtgccc--ggacactggataagaaataataaataggcaataaataaatgaatctcaattgatttacttaaattaaagtgatata 158  Q
    ||||||||||||||| ||||||  || ||||| |||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||| |||    
T  14394461 agggtgctgctaaccagtgccccggggcactgaataagaaataataaatagacaataaataaatgaatctcaattggtttacctaaattaaagtgagata 14394362  T
Q  159 taagtcaac 167  Q
    |||||||||    
T  14394361 taagtcaac 14394353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 83 - 167
Target Start/End: Complemental strand, 25672723 - 25672639
Alignment:
Q  83 ggacactggataagaaataataaataggcaataaataaatgaatctcaattgatttacttaaattaaagtgatatataagtcaac 167  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  25672723 ggacagtggataagaaataataaatagacaataaataaatgaatctcaattggtttacctaaattaaagtgatatataagtcaac 25672639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 61 - 167
Target Start/End: Complemental strand, 20983960 - 20983851
Alignment:
Q  61 agggtgctgctaaccggtgccc--gga-cactggataagaaataataaataggcaataaataaatgaatctcaattgatttacttaaattaaagtgatat 157  Q
    ||||||||||||||| ||||||  ||| |||||||||||||||||||||||||||||||||||||| || ||||||| ||||| ||||||||||||| ||    
T  20983960 agggtgctgctaaccagtgcccccggagcactggataagaaataataaataggcaataaataaatggatttcaattggtttacctaaattaaagtgagat 20983861  T
Q  158 ataagtcaac 167  Q
    ||||||||||    
T  20983860 ataagtcaac 20983851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 153
Target Start/End: Original strand, 20983526 - 20983614
Alignment:
Q  68 tgctaaccggtgccc---ggacactggataagaaataataaataggcaataaataaatgaatctcaattgatttacttaaattaaagtg 153  Q
    |||||||||||||||   || |||||||||||||| ||||||||| ||||||||||||| |||||| ||| ||||| | ||||||||||    
T  20983526 tgctaaccggtgcccccggggcactggataagaaaaaataaatagacaataaataaatggatctcatttggtttaccttaattaaagtg 20983614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 110 - 169
Target Start/End: Original strand, 8107592 - 8107651
Alignment:
Q  110 gcaataaataaatgaatctcaattgatttacttaaattaaagtgatatataagtcaacaa 169  Q
    |||||||||| |||||||||||||||||||| | ||||||  ||| | ||||||||||||    
T  8107592 gcaataaatagatgaatctcaattgatttacctcaattaatttgagaaataagtcaacaa 8107651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 14393983 - 14394032
Alignment:
Q  90 ggataagaaataataaataggcaataaataaatgaatctcaattgattta 139  Q
    ||||||| || |||||||| |||||||||||||| |||||| ||||||||    
T  14393983 ggataaggaacaataaataagcaataaataaatggatctcacttgattta 14394032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 9e-30; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 62 - 167
Target Start/End: Complemental strand, 43013247 - 43013139
Alignment:
Q  62 gggtgctgctaaccggtgccc---ggacactggataagaaataataaataggcaataaataaatgaatctcaattgatttacttaaattaaagtgatata 158  Q
    |||||||||||||| ||||||   || |||||||||||||||||||||||||||||||||||||| || ||||||| ||||| ||||||||||||| |||    
T  43013247 gggtgctgctaaccagtgcccccggggcactggataagaaataataaataggcaataaataaatggatttcaattggtttacctaaattaaagtgagata 43013148  T
Q  159 taagtcaac 167  Q
    |||||||||    
T  43013147 taagtcaac 43013139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 87 - 167
Target Start/End: Original strand, 54714520 - 54714600
Alignment:
Q  87 actggataagaaataataaataggcaataaataaatgaatctcaattgatttacttaaattaaagtgatatataagtcaac 167  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||    
T  54714520 actgtataagaaataataaatagacaataaataaatgaatctcaattggtttacctaaattaaagtgagatataagtcaac 54714600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 60 - 167
Target Start/End: Complemental strand, 23643896 - 23643790
Alignment:
Q  60 aagggtgctgctaaccggtgccc---ggacactggataagaaataataaataggcaataaataaatgaatctcaattgatttacttaaattaaagtgata 156  Q
    |||||||||||||||| ||||||   || || |||||||||||||||||||| |||||||||    |||| ||||||||||||| ||||||||||||| |    
T  23643896 aagggtgctgctaaccagtgccctgggggcaatggataagaaataataaataagcaataaat----gaatttcaattgatttacctaaattaaagtgaga 23643801  T
Q  157 tataagtcaac 167  Q
    |||||||||||    
T  23643800 tataagtcaac 23643790  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 68 - 153
Target Start/End: Original strand, 43012737 - 43012825
Alignment:
Q  68 tgctaaccggtgccc---ggacactggataagaaataataaataggcaataaataaatgaatctcaattgatttacttaaattaaagtg 153  Q
    |||||||||||||||   || ||||||||||| || ||||||||| ||||||||||||| |||||| ||| ||||| | ||||||||||    
T  43012737 tgctaaccggtgcccccggggcactggataaggaacaataaatagacaataaataaatggatctcatttggtttaccttaattaaagtg 43012825  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 153
Target Start/End: Complemental strand, 12639838 - 12639772
Alignment:
Q  87 actggataagaaataataaataggcaataaataaatgaatctcaattgatttacttaaattaaagtg 153  Q
    |||||||||| || ||||||||||||||||||||||| |||||| || ||| || | ||||||||||    
T  12639838 actggataaggaacaataaataggcaataaataaatggatctcacttaattcacctcaattaaagtg 12639772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 118
Target Start/End: Original strand, 12629807 - 12629870
Alignment:
Q  57 aaaaagggtgctgctaaccggtgccc--ggacactggataagaaataataaataggcaataaat 118  Q
    ||||||||| ||||||||||||||||  || ||||||||||| || | ||||||| ||||||||    
T  12629807 aaaaagggtactgctaaccggtgccctggggcactggataaggaacattaaatagacaataaat 12629870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 54714982 - 54714918
Alignment:
Q  89 tggataagaaataataaataggcaataaataaatgaatctcaattgatttacttaaattaaagtg 153  Q
    |||||||  ||||| |||||||||||||||||||| || ||| ||||||||  | ||||||||||    
T  54714982 tggataaagaataaaaaataggcaataaataaatggatttcacttgatttatcttaattaaagtg 54714918  T

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Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 59 - 150
Target Start/End: Complemental strand, 25182501 - 25182407
Alignment:
Q  59 aaagggtgctgctaaccggtgccc---ggacactggataagaaataataaataggcaataaataaatgaatctcaattgatttacttaaattaaa 150  Q
    ||||||||||||||||| ||||||   ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  25182501 aaagggtgctgctaaccagtgccccgaggacaatggataagaaataataaatagacaataaataaatgaatctcaattgatttacctaaattaaa 25182407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 88 - 167
Target Start/End: Complemental strand, 40889233 - 40889154
Alignment:
Q  88 ctggataagaaataataaataggcaataaataaatgaatctcaattgatttacttaaattaaagtgatatataagtcaac 167  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||| ||||||||||||    
T  40889233 ctggataagaaataataaataggcaataaataaatgaatcttaattgttttacctaaattaaagtgagatataagtcaac 40889154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 84 - 167
Target Start/End: Complemental strand, 15578215 - 15578132
Alignment:
Q  84 gacactggataagaaataataaataggcaataaataaatgaatctcaattgatttacttaaattaaagtgatatataagtcaac 167  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||    
T  15578215 gacactggataataaataataaataggtaataaataaatgaatctcaattggtttacctaaattaaagtgagatataagtcaac 15578132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 91 - 176
Target Start/End: Original strand, 32741482 - 32741567
Alignment:
Q  91 gataagaaataataaataggcaataaataaatgaatctcaattgatttacttaaattaaagtgatatataagtcaacaaataaaat 176  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||| ||||| |||||||||||| ||| ||||    
T  32741482 gataagaaataataaatatgcaataaataaatgaatctcaattgatttatctaaattatagtgagatataagtcaactaattaaat 32741567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 86 - 167
Target Start/End: Original strand, 38916048 - 38916129
Alignment:
Q  86 cactggataagaaataataaataggcaataaataaatgaatctcaattgatttacttaaattaaagtgatatataagtcaac 167  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||| ||||  ||||||||||||| ||||||||||||    
T  38916048 cactggataagaaataataaataggcaataaataaatagatctcaattggtttatctaaattaaagtgagatataagtcaac 38916129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 62 - 167
Target Start/End: Complemental strand, 27230955 - 27230847
Alignment:
Q  62 gggtgctgctaaccggtgccc---ggacactggataagaaataataaataggcaataaataaatgaatctcaattgatttacttaaattaaagtgatata 158  Q
    |||||||||||||| ||||||   || |||| ||||| |||||| ||||||||||||| ||||||||||||||||  ||||| ||||||||||||| |||    
T  27230955 gggtgctgctaaccagtgccctgggggcactagataaaaaataaaaaataggcaataagtaaatgaatctcaattattttacctaaattaaagtgagata 27230856  T
Q  159 taagtcaac 167  Q
    |||||||||    
T  27230855 taagtcaac 27230847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 167
Target Start/End: Original strand, 28750587 - 28750663
Alignment:
Q  91 gataagaaataataaataggcaataaataaatgaatctcaattgatttacttaaattaaagtgatatataagtcaac 167  Q
    ||||| |||||||||||||||||||||||||||||| ||||||| ||||  ||||||||||||| ||||||||||||    
T  28750587 gataaaaaataataaataggcaataaataaatgaatttcaattggtttatctaaattaaagtgagatataagtcaac 28750663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 68 - 153
Target Start/End: Complemental strand, 38916524 - 38916437
Alignment:
Q  68 tgctaaccggtgccc--ggacactggataagaaataataaataggcaataaataaatgaatctcaattgatttacttaaattaaagtg 153  Q
    ||||||||||||||   || ||||||||||  || ||||||||| ||||||||||||| |||||| ||||||||| | ||||||||||    
T  38916524 tgctaaccggtgcctctgggcactggataaagaacaataaatagacaataaataaatggatctcacttgatttaccttaattaaagtg 38916437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 92 - 152
Target Start/End: Original strand, 41539443 - 41539503
Alignment:
Q  92 ataagaaataataaataggcaataaataaatgaatctcaattgatttacttaaattaaagt 152  Q
    |||||||| |||||||||||||||||||||||||||| | ||| |||| || |||||||||    
T  41539443 ataagaaacaataaataggcaataaataaatgaatcttagttggtttattttaattaaagt 41539503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 153
Target Start/End: Complemental strand, 28751038 - 28750971
Alignment:
Q  86 cactggataagaaataataaataggcaataaataaatgaatctcaattgatttacttaaattaaagtg 153  Q
    ||||||||||| || ||||||||||||||||||||||| |||||| ||  ||||| | ||||||||||    
T  28751038 cactggataaggaacaataaataggcaataaataaatggatctcacttagtttaccttaattaaagtg 28750971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 38478488 - 38478431
Alignment:
Q  112 aataaataaatgaatctcaattgatttacttaaattaaagtgatatataagtcaacaa 169  Q
    ||||||||||||||||||||||||||||| | ||||||  ||| | ||||||||||||    
T  38478488 aataaataaatgaatctcaattgatttacctcaattaatttgagaaataagtcaacaa 38478431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 153
Target Start/End: Original strand, 27230485 - 27230533
Alignment:
Q  105 aataggcaataaataaatgaatctcaattgatttacttaaattaaagtg 153  Q
    ||||| |||||||||||||||||||| ||||||||| | ||||||||||    
T  27230485 aatagacaataaataaatgaatctcatttgatttaccttaattaaagtg 27230533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 87 - 167
Target Start/End: Original strand, 53153501 - 53153581
Alignment:
Q  87 actggataagaaataataaataggcaataaataaatgaatctcaattgatttacttaaattaaagtgatatataagtcaac 167  Q
    ||||||||| ||||||||||||||||||||||||||| || ||||||| ||||  ||||||||||||| ||||||||||||    
T  53153501 actggataataaataataaataggcaataaataaatggatttcaattggtttatctaaattaaagtgagatataagtcaac 53153581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 87 - 139
Target Start/End: Original strand, 785426 - 785478
Alignment:
Q  87 actggataagaaataataaataggcaataaataaatgaatctcaattgattta 139  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||| ||||    
T  785426 actggataagaaataataaatagacaataaataaatgaatcttaattggttta 785478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 167
Target Start/End: Original strand, 30384736 - 30384792
Alignment:
Q  111 caataaataaatgaatctcaattgatttacttaaattaaagtgatatataagtcaac 167  Q
    ||||||||||||| |||||||||| ||||| ||||||||||||| ||||||||||||    
T  30384736 caataaataaatggatctcaattggtttacctaaattaaagtgagatataagtcaac 30384792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 153
Target Start/End: Complemental strand, 785882 - 785815
Alignment:
Q  86 cactggataagaaataataaataggcaataaataaatgaatctcaattgatttacttaaattaaagtg 153  Q
    ||||| ||||| || | ||||||||||||||||||||| |||||| ||||||||| | ||| ||||||    
T  785882 cactgaataaggaacattaaataggcaataaataaatggatctcacttgatttaccttaatcaaagtg 785815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 3735783 - 3735726
Alignment:
Q  112 aataaataaatgaatctcaattgatttacttaaattaaagtgatatataagtcaacaa 169  Q
    |||||||| |||||||||||||||||||| | ||||||  ||| | ||||||||||||    
T  3735783 aataaatagatgaatctcaattgatttacctcaattaatttgagaaataagtcaacaa 3735726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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