View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20739_high_10 (Length: 353)
Name: NF20739_high_10
Description: NF20739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20739_high_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 27 - 349
Target Start/End: Original strand, 19493362 - 19493684
Alignment:
| Q |
27 |
accctagcaatgactttgtctccaacttctactcacgaacacacccttttaatgtcttctactgacaaagaaaccctagaaaatcatccggccttcattg |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19493362 |
accctagcaatgactttgtctccaacttctactcacgaagacacccttttaatgtcttctactgacaaagaaaccctagaaaatcatccggccttcattg |
19493461 |
T |
|
| Q |
127 |
gctgcagccgtctcatcattttggtcccttttgttctgattcttacatacattattctatcaatggacgttgttcccgattctccatcctttgatgtcga |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
19493462 |
gctgcagccgtctcatcattttggtcccttttgttctgattcttacatacattattctatcaatggacgttgttcccgattctccatccttcgatgtcga |
19493561 |
T |
|
| Q |
227 |
atccgagggttcactcaactcactaactgtcaacggcacccaactcacagccgagtttaacatttcggtctccggatataacttaaaatcgtattcccgt |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
19493562 |
atccgagggttcactcaactcactaactgtcaacggcacccaactcacagccgagtttaacatttcggtctccggatataacttcaaatcgtattcccgt |
19493661 |
T |
|
| Q |
327 |
gtgtattacgatgatgtctctgc |
349 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
19493662 |
gtgtattacgatgatgtctctgc |
19493684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 222 - 298
Target Start/End: Original strand, 19530498 - 19530574
Alignment:
| Q |
222 |
gtcgaatccgagggttcactcaactcactaactgtcaacggcacccaactcacagccgagtttaacatttcggtctc |
298 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||| |||||| ||||| || |||||||| | |||||||||||||| |
|
|
| T |
19530498 |
gtcgactccgtgggttcactcaactcactaactgttaacggcccccaattctcagccgagctcaacatttcggtctc |
19530574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 233 - 297
Target Start/End: Complemental strand, 19125539 - 19125475
Alignment:
| Q |
233 |
gggttcactcaactcactaactgtcaacggcacccaactcacagccgagtttaacatttcggtct |
297 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||| ||||||| ||||| ||||||| |||| |
|
|
| T |
19125539 |
gggtgcactcaactcactaactgttaacggcacccaaatcacagctgagttcgacatttcagtct |
19125475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 19501594 - 19501653
Alignment:
| Q |
231 |
gagggttcactcaactcactaactgtcaacggcacccaactcacagccgagtttaacatt |
290 |
Q |
| |
|
||||||||||||||||||||||| | | | ||||||||||||||||||||| |||||| |
|
|
| T |
19501594 |
gagggttcactcaactcactaaccattagcaacacccaactcacagccgagttcaacatt |
19501653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 298
Target Start/End: Original strand, 46536552 - 46536617
Alignment:
| Q |
233 |
gggttcactcaactcactaactgtcaacggcacccaactcacagccgagtttaacatttcggtctc |
298 |
Q |
| |
|
|||||||||||||||||| || || |||||||||||| |||||||| |||| || ||||||||||| |
|
|
| T |
46536552 |
gggttcactcaactcacttacagttaacggcacccaagtcacagccaagttcaatatttcggtctc |
46536617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University