View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20739_low_1 (Length: 882)
Name: NF20739_low_1
Description: NF20739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20739_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 651; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 651; E-Value: 0
Query Start/End: Original strand, 12 - 756
Target Start/End: Original strand, 1926343 - 1927078
Alignment:
| Q |
12 |
atgaatcatatggataatgttgttcctgatgatgttttttggtgggatggtttgggtgatgatcaaggagtttcttgcagtcaacaacaagaggatttga |
111 |
Q |
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| T |
1926343 |
atgaatcatatggataatgttgttcctgatgatgttttttggtgggatggtttgggtgatgatcaaggagtttcttgcagtcaacaacaagaggatttga |
1926442 |
T |
|
| Q |
112 |
acatttccattgaagactatctataatttacaacactcacacaccctgcgcatgtgttaaaatgtggtggtatattatttttagatttagatgtatactt |
211 |
Q |
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| T |
1926443 |
acatttccattgaagactatctataatttacaacactcacacaccctgcgcatgtgttaaaatgtggtggtatattatgtttagatttagatgtatactt |
1926542 |
T |
|
| Q |
212 |
tagtggtttacaagttacaacaagtggttagtgtttttgtgtggaaatgtaatcaagaaaaatgaagnnnnnnnnggactatttcacacttagataccat |
311 |
Q |
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| T |
1926543 |
tagtggtttacaagttacaacaagtggttagtgtt--------gaaatgtaatcaagaaaaatgaagaaaaaaaaggactatttcacacttagataccat |
1926634 |
T |
|
| Q |
312 |
ttttgtgttgagtgcgtgatacacatgtaaatggcaaattgacttatattttgcaattggaatgtatgtactatgtacacatttcattttctgagttaag |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1926635 |
ttttgtgttgagtgcgtgatacacatgtaaatggcaaattgacttatattttgcaattggaatgtatgtactatgtacacatttcattttctgagttaag |
1926734 |
T |
|
| Q |
412 |
agagacctgtcattattattgtcagaggggaaaaatcccaatgaagttcacttcgtaccgtgccttaactactgtttactgtctcaggaaagctccaata |
511 |
Q |
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| T |
1926735 |
agagacctgtcattattattgtcagaggggaaaaatcccaatgaagttcacttcgtaccgtgccttaactactgtttactgtctcaggaaagctccaata |
1926834 |
T |
|
| Q |
512 |
tagaaagaaaaggaccaaactaaaagttatcattcgtaccatgtcgatttaccatttacaaagacctatcattgtcattttcatgttttaaatnnnnnnn |
611 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1926835 |
tagaaagaaaaggaccaaactaaaagttatcattcgtaccatgtcaatttaccatttacaaagacctatcattgtcattttcatgttttaaat-aaaaaa |
1926933 |
T |
|
| Q |
612 |
ncattcaacttaccattcttaactcatcattgtcacataagatgtaaaatgcttttatagccatatacatcaataatagcatttgaattgaatgtaatca |
711 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1926934 |
acattcaacttaccattcttaactcatcattgtcacataaaatgtaaaatgcttttatagccatatacatcaataatagcatttgaattgaatgtaatca |
1927033 |
T |
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| Q |
712 |
caatctcttacacatgtggatccactccttaagaaccttgccaaa |
756 |
Q |
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| T |
1927034 |
caatctcttacacatgtggatccactccttaagaaccttgccaaa |
1927078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 757 - 869
Target Start/End: Original strand, 1927128 - 1927240
Alignment:
| Q |
757 |
ttttagaccactcaaaaaacacatcctaatgaggaaattggctctctgataaatcaatcaaaagtatcctcaccaacttggtttatttgaatctgttatg |
856 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1927128 |
ttttagaccactcaaaaaactcatcctaatgaggaaattggctctctgataaatcaatcaaaagtatcctcaccaacttggtttatttgaatctgttatg |
1927227 |
T |
|
| Q |
857 |
agaataatttctg |
869 |
Q |
| |
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||||||||||||| |
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| T |
1927228 |
agaataatttctg |
1927240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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