View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20739_low_13 (Length: 255)
Name: NF20739_low_13
Description: NF20739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20739_low_13 |
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| [»] chr5 (9 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 255
Target Start/End: Complemental strand, 19493996 - 19493757
Alignment:
| Q |
16 |
atcccagggtttgttgtgttgttgtcatttggagaaactgcaaacttgagtgggttgcaaacaaccttcataggcctccagtcggactgagcccacctgt |
115 |
Q |
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| T |
19493996 |
atcccagggtttgttgtgttgttgtcatttggagaaactgcaaacttgagtgggttgcaaacaaccttcataggcctccagtcggactgagcccacctgt |
19493897 |
T |
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| Q |
116 |
ttttgtacttaaacaaagacttcacaattagcccaaattctaccgttccatctttgcggctccgagcaataccggtcgcagcgccaccgaaatcatcaga |
215 |
Q |
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| T |
19493896 |
ttttgtacttaaacaaagacttcacaattagcccaaattccaccgttccatctttgcggctccgagcaataccagtcgcagcgccaccgaaatcatcaga |
19493797 |
T |
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| Q |
216 |
cttattcacggaaagcgtcaaatgaatcacactctcactc |
255 |
Q |
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| T |
19493796 |
cttattcacggaaagcgtcaaatgaatcacactctcactc |
19493757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 16 - 185
Target Start/End: Complemental strand, 19523899 - 19523730
Alignment:
| Q |
16 |
atcccagggtttgttgtgttgttgtcatttggagaaactgcaaacttgagtgggttgcaaacaaccttcataggcctccagtcggactgagcccacctgt |
115 |
Q |
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||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||| |||| | || |||| | ||||||||||||||||| |
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| T |
19523899 |
atcccaggggttgttgtgttatagtcatttggagaaactgcaaacttgagtgggttgcaaacagcctttaaagatgtccattgggactgagcccacctgt |
19523800 |
T |
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| Q |
116 |
ttttgtacttaaacaaagacttcacaattagcccaaattctaccgttccatctttgcggctccgagcaat |
185 |
Q |
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| T |
19523799 |
tcttgtacttaaacaaagccgacacaatcagcccaaactccaccattccatttttgcggctcagagcaat |
19523730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 19530934 - 19530735
Alignment:
| Q |
19 |
ccagggtttgttgtgttgttgtcatttggagaaactgcaaacttgagtgggttgcaaacaaccttcataggcctccagtcggactgagcccacctgtttt |
118 |
Q |
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|||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||| | || |||| | ||||||| |||||||||| | |
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| T |
19530934 |
ccagggattgttgtgttgtagtcatttggagaaactgcaaacttgagtggtttgcaaacagcctttaaagatgtccatttggactgatcccacctgttct |
19530835 |
T |
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| Q |
119 |
tgtacttaaacaaagacttcacaattagcccaaattctaccgttccatctttgcggctccgagcaataccggtcgcagcgccaccgaaatcatcagactt |
218 |
Q |
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| T |
19530834 |
tgtacttaaacaaagctgacacaatcagcccaaactccaccattccatttttgcggctctgagcaatggcggtggccacacctccgaaatcatcagactt |
19530735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 26 - 184
Target Start/End: Original strand, 19125121 - 19125279
Alignment:
| Q |
26 |
ttgttgtgttgttgtcatttggagaaactgcaaacttgagtgggttgcaaacaaccttcataggcctccagtcggactgagcccacctgtttttgtactt |
125 |
Q |
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| T |
19125121 |
ttgttgtgttgtagacatttcgagaaactgcaaatttgagtgggttgcaaacaaccttcaaagatgtccagtcggaatgagaaaatctgttcttgtactt |
19125220 |
T |
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| Q |
126 |
aaacaaagacttcacaattagcccaaattctaccgttccatctttgcggctccgagcaa |
184 |
Q |
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| T |
19125221 |
aaacaaagttgacacaatcagcccaaactccacccttccatctttgcgcctcagagcaa |
19125279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 250
Target Start/End: Complemental strand, 19502005 - 19501784
Alignment:
| Q |
29 |
ttgtgttgttgtcatttggagaaactgcaaacttgagtgggttgcaaacaaccttcataggcctccagtcggactgagcccacctgtttttgtacttaaa |
128 |
Q |
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|||||||| |||||||||||||||| |||| |||||||| |||||||||||||||| || | |||| |||| || | | ||||| || || |||| |
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| T |
19502005 |
ttgtgttgaagtcatttggagaaactccaaatttgagtggattgcaaacaaccttcagagactcccagccggaatgcgacatactgttcttatatttaat |
19501906 |
T |
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| Q |
129 |
caaagacttcacaattagcccaaattctaccgttccatctttgcggctccgagcaataccggtcgcagcgccaccgaaatcatcagacttattcacggaa |
228 |
Q |
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| T |
19501905 |
caaagatgacagaatgagcccaaactccactcttccatctttgcggctctgagcaatgctggtcgccgcgccgccaaaatcagaaggcttgttcaccgac |
19501806 |
T |
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| Q |
229 |
agcgtcaaatgaatcacactct |
250 |
Q |
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| T |
19501805 |
aacgtcatatgaatcacgctct |
19501784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 44 - 106
Target Start/End: Original strand, 19130460 - 19130522
Alignment:
| Q |
44 |
ttggagaaactgcaaacttgagtgggttgcaaacaaccttcataggcctccagtcggactgag |
106 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| || |||||||||| |||| |
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| T |
19130460 |
ttggagaaactgcaaatttgagtgggttgcaaacaaccttcaaagatgtccagtcggaatgag |
19130522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 249
Target Start/End: Original strand, 19517456 - 19517560
Alignment:
| Q |
145 |
agcccaaattctaccgttccatctttgcggctccgagcaataccggtcgcagcgccaccgaaatcatcagacttattcacggaaagcgtcaaatgaatca |
244 |
Q |
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| T |
19517456 |
agcccaaactccaccgttccatctttgcggctctgagcaatgctggctgcggcgccaccaaaatcaataggcttgttcaccgacaacgtcatatgaatca |
19517555 |
T |
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| Q |
245 |
cactc |
249 |
Q |
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||||| |
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| T |
19517556 |
cactc |
19517560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 59
Target Start/End: Complemental strand, 19495940 - 19495907
Alignment:
| Q |
26 |
ttgttgtgttgttgtcatttggagaaactgcaaa |
59 |
Q |
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| T |
19495940 |
ttgttgtgttgtagtcatttggagaaactgcaaa |
19495907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 19517355 - 19517396
Alignment:
| Q |
44 |
ttggagaaactgcaaacttgagtgggttgcaaacaaccttca |
85 |
Q |
| |
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||||||||||| |||| |||||||| |||||||||||||||| |
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| T |
19517355 |
ttggagaaactccaaatttgagtggattgcaaacaaccttca |
19517396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 46536956 - 46536887
Alignment:
| Q |
16 |
atcccagggtttgttgtgttgttgtcatttggagaaactgcaaacttgagtgggttgcaaacaaccttca |
85 |
Q |
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||||||| | ||| ||||||| |||||||| |||||||| |||| |||| |||||||||||||| |||| |
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| T |
46536956 |
atcccagaggttgatgtgttgaagtcatttgaagaaactgtaaacctgagagggttgcaaacaactttca |
46536887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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