View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20739_low_17 (Length: 228)

Name: NF20739_low_17
Description: NF20739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20739_low_17
NF20739_low_17
[»] chr4 (12 HSPs)
chr4 (1-228)||(37261189-37261416)
chr4 (1-228)||(31272015-31272244)
chr4 (88-224)||(33465655-33465790)
chr4 (26-224)||(19105285-19105498)
chr4 (93-224)||(32222498-32222628)
chr4 (96-224)||(39319020-39319147)
chr4 (1-87)||(39318897-39318984)
chr4 (1-91)||(33465816-33465906)
chr4 (93-186)||(15134740-15134832)
chr4 (71-115)||(16951137-16951181)
chr4 (157-192)||(41815422-41815457)
chr4 (38-91)||(32222659-32222711)
[»] chr1 (8 HSPs)
chr1 (1-228)||(25853650-25853879)
chr1 (1-215)||(10138544-10138774)
chr1 (82-224)||(47453495-47453636)
chr1 (81-224)||(16750078-16750213)
chr1 (153-224)||(18809844-18809913)
chr1 (1-50)||(16750221-16750270)
chr1 (97-193)||(893067-893163)
chr1 (1-64)||(47453675-47453738)
[»] chr5 (10 HSPs)
chr5 (1-228)||(560011-560238)
chr5 (1-228)||(26670523-26670767)
chr5 (1-228)||(26942120-26942364)
chr5 (1-228)||(39521672-39521916)
chr5 (1-228)||(41999950-42000192)
chr5 (1-228)||(36938822-36939066)
chr5 (1-224)||(36426886-36427126)
chr5 (6-224)||(9911871-9912087)
chr5 (153-224)||(13585072-13585143)
chr5 (153-225)||(25686230-25686302)
[»] chr3 (9 HSPs)
chr3 (1-228)||(8886471-8886698)
chr3 (1-228)||(23662743-23662970)
chr3 (1-228)||(3686631-3686875)
chr3 (1-224)||(18470459-18470699)
chr3 (1-224)||(12967154-12967393)
chr3 (85-224)||(38205970-38206106)
chr3 (1-192)||(24755848-24756037)
chr3 (1-192)||(24764845-24765034)
chr3 (85-194)||(48434812-48434922)
[»] chr2 (13 HSPs)
chr2 (1-228)||(30654133-30654360)
chr2 (1-228)||(17971995-17972227)
chr2 (1-228)||(30649434-30649678)
chr2 (1-224)||(9182051-9182272)
chr2 (85-193)||(25480210-25480317)
chr2 (85-193)||(25487816-25487923)
chr2 (1-222)||(30616187-30616404)
chr2 (88-222)||(28450564-28450698)
chr2 (6-224)||(27417511-27417730)
chr2 (1-51)||(25480340-25480390)
chr2 (1-51)||(25487946-25487996)
chr2 (112-224)||(40036114-40036226)
chr2 (1-63)||(28450448-28450510)
[»] chr8 (11 HSPs)
chr8 (1-228)||(4239650-4239882)
chr8 (1-228)||(40127203-40127447)
chr8 (1-228)||(23083205-23083437)
chr8 (1-224)||(38183937-38184146)
chr8 (1-224)||(17023479-17023717)
chr8 (1-224)||(17553972-17554210)
chr8 (96-224)||(34116990-34117117)
chr8 (1-223)||(25369068-25369288)
chr8 (6-223)||(8319964-8320177)
chr8 (85-194)||(4539861-4539971)
chr8 (153-192)||(19952790-19952829)
[»] chr6 (6 HSPs)
chr6 (5-150)||(16836227-16836389)
chr6 (8-224)||(15997949-15998165)
chr6 (1-186)||(12796138-12796319)
chr6 (132-224)||(17285200-17285292)
chr6 (153-224)||(10490808-10490879)
chr6 (153-224)||(19481272-19481343)
[»] chr7 (5 HSPs)
chr7 (90-224)||(21667919-21668051)
chr7 (6-91)||(10389827-10389912)
chr7 (157-224)||(10389672-10389739)
chr7 (1-75)||(21667804-21667878)
chr7 (157-224)||(15984869-15984936)
[»] scaffold0070 (2 HSPs)
scaffold0070 (1-223)||(61835-62055)
scaffold0070 (1-60)||(66037-66096)
[»] scaffold0045 (1 HSPs)
scaffold0045 (95-224)||(81675-81804)
[»] scaffold0468 (1 HSPs)
scaffold0468 (28-224)||(516-712)
[»] scaffold0060 (1 HSPs)
scaffold0060 (1-228)||(49351-49580)
[»] scaffold0067 (1 HSPs)
scaffold0067 (155-224)||(31030-31099)
[»] scaffold0011 (1 HSPs)
scaffold0011 (132-224)||(4686-4778)


Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 37261416 - 37261189
Alignment:
Q  1 tcatcactatttctgattacatgaaagtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgctcccactagtgccccca 100  Q
    |||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||     
T  37261416 tcataactatttctgattacatgaatatgatcagatatagtgcccccactagttcttaatttttagaagagaatttattttgctcccactagtgcccccg 37261317  T
Q  101 ctattctttagtttaaaggggtaaatatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgtttcgc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37261316 ctattctttagtttaaaggggtaaatatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgtttcgc 37261217  T
Q  201 tatttatagcatacccaatgaatataca 228  Q
    ||||||||||||||||||||||||||||    
T  37261216 tatttatagcatacccaatgaatataca 37261189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 31272015 - 31272244
Alignment:
Q  1 tcatcactatttctgattacatgaaagtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgctcccactagtgccccca 100  Q
    |||| ||||||| ||||||||||||  |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  31272015 tcataactatttttgattacatgaatatgatcagatatagtgcccccactagttcttgatttttagaaggaaatttattttgctcccactagtgccccca 31272114  T
Q  101 ctattctttagtttaaaggggtaaatatttacatagaaattggcgtcttt--taattctatgatcactttaacatttaggtcataaaacctatatgtttc 198  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31272115 ctattctttagtttaaaggggtaaatatttacatagaaatcagcgtcttttataattctatgatcactttaacatttaggtcataaaacctatatgtttc 31272214  T
Q  199 gctatttatagcatacccaatgaatataca 228  Q
    ||||||||||||||||||||||||||||||    
T  31272215 gctatttatagcatacccaatgaatataca 31272244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 88 - 224
Target Start/End: Complemental strand, 33465790 - 33465655
Alignment:
Q  88 actagtgcccccactattctttagtttaaaggggtaaatatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcataaaac 187  Q
    |||||||||||||||||||||||| | |||||||||||| |||||||||| || |   |||||||||||||||||||||||| |||||||||||||||||    
T  33465790 actagtgcccccactattctttaggt-aaaggggtaaatgtttacatagatatcgatatcttttaattctatgatcactttagcatttaggtcataaaac 33465692  T
Q  188 ctatatgtttcgctatttatagcatacccaatgaata 224  Q
    |||||||||||||||||||||||||||||||||||||    
T  33465691 ctatatgtttcgctatttatagcatacccaatgaata 33465655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 26 - 224
Target Start/End: Original strand, 19105285 - 19105498
Alignment:
Q  26 agtgatcagatatagtgcccccactagttcttaatttttagaagggaatttatttt-----------------gctcccactagtgcccccactattctt 108  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||||                 ||||||||||||||||| |||||||||    
T  19105285 agtgatcagatatagtgcccccactagttcttaatttttaaaaaggaatttattttacccccactaatttcgtgctcccactagtgcccc-actattctt 19105383  T
Q  109 tagtttaaaggggtaaatatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgtttcgctatttata 208  Q
    ||||| |||||  |||||||||||||||||||   | |||||||  ||||||||||||||| ||||||||||||||||||||||||||| | ||||||||    
T  19105384 tagtt-aaaggattaaatatttacatagaaatcaacatcttttatatctatgatcactttagcatttaggtcataaaacctatatgttttgttatttata 19105482  T
Q  209 gcatacccaatgaata 224  Q
    ||||| ||||||||||    
T  19105483 gcatatccaatgaata 19105498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 93 - 224
Target Start/End: Complemental strand, 32222628 - 32222498
Alignment:
Q  93 tgcccccactattctttagtttaaaggggtaaatatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcataaaacctata 192  Q
    |||||||||||||||||| |||||||||||||||||||||||| |||| | | || ||| ||||||||||||||||| ||||||||||||||||||||||    
T  32222628 tgcccccactattcttta-tttaaaggggtaaatatttacatataaatcgacatcgttttattctatgatcactttagcatttaggtcataaaacctata 32222530  T
Q  193 tgtttcgctatttatagcatacccaatgaata 224  Q
    || ||||||||||||| ||||| |||||||||    
T  32222529 tgcttcgctatttataacatactcaatgaata 32222498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 96 - 224
Target Start/End: Original strand, 39319020 - 39319147
Alignment:
Q  96 ccccactattctttagtttaaaggggtaaatatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgt 195  Q
    ||||||| ||||||| ||||||||||||  |||||||||| |||| |   | |||||||||||||||||||||| |||| ||||||||||||  |||||     
T  39319020 ccccactgttcttta-tttaaaggggtatttatttacataaaaatcgttatattttaattctatgatcactttagcattgaggtcataaaactgatatgc 39319118  T
Q  196 ttcgctatttatagcatacccaatgaata 224  Q
    ||||||| ||||| |||||||||| ||||    
T  39319119 ttcgctaattataacatacccaattaata 39319147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 39318897 - 39318984
Alignment:
Q  1 tcatcactatttctgattacatgaaagtgatcagatatagtgcccccactagttcttaa-tttttagaagggaatttattttgctccc 87  Q
    |||| |||||||||||||||  ||| ||||||||||||||| |||||||| |||||||| |||||| |||||| ||||||||||||||    
T  39318897 tcataactatttctgattactagaatgtgatcagatatagttcccccacttgttcttaattttttaaaagggattttattttgctccc 39318984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 33465906 - 33465816
Alignment:
Q  1 tcatcactatttctgattacatgaaagtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgctcccacta 91  Q
    |||| ||||||||||||||   ||| ||||||||||||||||||||||||| ||| ||||||||| || |||||||||||| | |||||||    
T  33465906 tcataactatttctgattattggaatgtgatcagatatagtgcccccactatttcataatttttaaaaaggaatttatttttcccccacta 33465816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 93 - 186
Target Start/End: Complemental strand, 15134832 - 15134740
Alignment:
Q  93 tgcccccactattctttagtttaaaggggtaaatatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcataaaa 186  Q
    ||||||||||||| |||| ||||||||||||  ||||||||||||||| | | || ||||| |||||| |||||||  ||||||||||||||||    
T  15134832 tgcccccactattattta-tttaaaggggtatttatttacatagaaatcgacatcgtttaagtctatgctcacttttgcatttaggtcataaaa 15134740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 16951137 - 16951181
Alignment:
Q  71 gaatttattttgctcccactagtgcccccactattctttagttta 115  Q
    ||||||||||||| ||||||||||||| |||||||||||| ||||    
T  16951137 gaatttattttgcccccactagtgccctcactattctttaattta 16951181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 192
Target Start/End: Original strand, 41815422 - 41815457
Alignment:
Q  157 tatgatcactttaacatttaggtcataaaacctata 192  Q
    ||||||||||||| ||||||||||||||||||||||    
T  41815422 tatgatcactttagcatttaggtcataaaacctata 41815457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 32222711 - 32222659
Alignment:
Q  38 tagtgcccccactagttcttaatttttagaagggaatttattttgctcccacta 91  Q
    |||||||||||||||||||||| ||||| |||| || ||||||||| |||||||    
T  32222711 tagtgcccccactagttcttaactttta-aaggaaagttattttgcccccacta 32222659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 25853650 - 25853879
Alignment:
Q  1 tcatcactatttctgattacatgaaagtgatcagatatagtgcccccactagttcttaatttttagaagggaatttatttt--gctcccactagtgcccc 98  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  25853650 tcataactatttctgattacatgaatgtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttttgctcccactagtgcccc 25853749  T
Q  99 cactattctttagtttaaaggggtaaatatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgtttc 198  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25853750 cactattctttagtttaaaggggtaaagatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgtttc 25853849  T
Q  199 gctatttatagcatacccaatgaatataca 228  Q
    |||||||||||||||| |||||||||||||    
T  25853850 gctatttatagcatactcaatgaatataca 25853879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 10138544 - 10138774
Alignment:
Q  1 tcatcactatttctgattacatgaaagtgatcagatatagtgcccccactagttcttaatttttagaagggaatttatttt-----------------gc 83  Q
    |||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||                 ||    
T  10138544 tcataactatttctgattacatgaatatgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgcccccggtaatgttttgc 10138643  T
Q  84 tcccactagtgcccccactattctttagtttaaaggggtaaatatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcata 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10138644 tcccactagtgcccccactattctttagtttaaaggggtaaatatttacatagaaatcggcgtcttttaattctatgatcactttaacatttaggtcata 10138743  T
Q  184 aaacctatatgtttcgctatttatagcatacc 215  Q
    ||| ||||||||||||||||||||||||||||    
T  10138744 aaa-ctatatgtttcgctatttatagcatacc 10138774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 82 - 224
Target Start/End: Complemental strand, 47453636 - 47453495
Alignment:
Q  82 gctcccactagtgcccccactattctttagtttaaaggggtaaatatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtca 181  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||   | |  ||| || ||||||||||||||||||||||||||    
T  47453636 gctcccactagcgcccccactattcttta-tttaaaggggtaaatatttacatagaaatcaacattgttttatgctatgatcactttaacatttaggtca 47453538  T
Q  182 taaaacctatatgtttcgctatttatagcatacccaatgaata 224  Q
    ||||||||||||| ||   |||||||| |||||||||||||||    
T  47453537 taaaacctatatgattttttatttataacatacccaatgaata 47453495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 81 - 224
Target Start/End: Complemental strand, 16750213 - 16750078
Alignment:
Q  81 tgctcccactagtgcccccactattctttagtttaaaggggtaaatatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtc 180  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||   | || ||| |||||||||||||       ||||||||    
T  16750213 tgctcccactagagcccccactattcttta-tttaaaggggtaaatatttacatagaaatcaacatcgttttattctatgatcac-------tttaggtc 16750122  T
Q  181 ataaaacctatatgtttcgctatttatagcatacccaatgaata 224  Q
    |||||||||||||| ||||||||||||| |||||||||||||||    
T  16750121 ataaaacctatatgcttcgctatttataacatacccaatgaata 16750078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 224
Target Start/End: Original strand, 18809844 - 18809913
Alignment:
Q  153 attctatgatcactttaacatttaggtcataaaacctatatgtttcgctatttatagcatacccaatgaata 224  Q
    |||||| ||| |||||| |||||||||||||||||  |||||||| |||||||||||||||||| |||||||    
T  18809844 attctaagattactttagcatttaggtcataaaac--atatgttttgctatttatagcatacccgatgaata 18809913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 16750270 - 16750221
Alignment:
Q  1 tcatcactatttctgattacatgaaagtgatcagatatagtgcccccact 50  Q
    |||| |||||||||||||||  ||| |||||||||||||||| |||||||    
T  16750270 tcataactatttctgattactggaatgtgatcagatatagtgtccccact 16750221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 193
Target Start/End: Original strand, 893067 - 893163
Alignment:
Q  97 cccactattctttagtttaaaggggtaaatatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcataaaacctatat 193  Q
    |||||||||||||| ||||||||||||  ||| | ||||||| ||  | || ||| ||||||||| |||||||  ||||| | ||||||| ||||||    
T  893067 cccactattctttaatttaaaggggtatttatattcatagaacttaacatcatttgattctatgaccactttagtatttatgccataaaaactatat 893163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 47453738 - 47453675
Alignment:
Q  1 tcatcactatttctgattacatgaaa-gtgatcagatatagtgcccccactagttcttaattttt 64  Q
    |||| ||||||| ||||||| ||||| ||||| ||||||| |||| |||||||||||||||||||    
T  47453738 tcataactatttttgattac-tgaaatgtgataagatataatgcctccactagttcttaattttt 47453675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 560011 - 560238
Alignment:
Q  1 tcatcactatttctgattacatgaaagtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgctcccactagtgccccca 100  Q
    |||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  560011 tcataactatttctgattacacgaatgtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgcccccactagtgccccca 560110  T
Q  101 ctattctttagtttaaaggggtaaatatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgtttcgc 200  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||    
T  560111 ctattctttagtttcaaggggtaaatatttacatagaaatcggcgtcttttaattctatgatcactttaacatttaggtcataaagcctatatgttttgc 560210  T
Q  201 tatttatagcatacccaatgaatataca 228  Q
    ||||||||||||||||||||||||||||    
T  560211 tatttatagcatacccaatgaatataca 560238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 26670523 - 26670767
Alignment:
Q  1 tcatcactatttctgattacatgaaagtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgc----------------- 83  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||                     
T  26670523 tcataactatttctgattacatgaatgtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgcccccgataatgttgtgc 26670622  T
Q  84 tcccactagtgcccccactattctttagtttaaaggggtaaatatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcata 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  26670623 tcccactagtgcccccactattctttagtttaaaggggtaaatatttacatagaaatcggtgtcttttaattctatgatcactttaacatttaggtcata 26670722  T
Q  184 aaacctatatgtttcgctatttatagcatacccaatgaatataca 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  26670723 aaacctatatgtttcgctatttatagcatacccaatgaatataca 26670767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 26942120 - 26942364
Alignment:
Q  1 tcatcactatttctgattacatgaaagtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgc----------------- 83  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||                     
T  26942120 tcataactatttctgattacatgaatgtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgcccccgataatgttgtgc 26942219  T
Q  84 tcccactagtgcccccactattctttagtttaaaggggtaaatatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcata 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  26942220 tcccactagtgcccccactattctttagtttaaaggggtaaatatttacatagaaatcggtgtcttttaattctatgatcactttaacatttaggtcata 26942319  T
Q  184 aaacctatatgtttcgctatttatagcatacccaatgaatataca 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  26942320 aaacctatatgtttcgctatttatagcatacccaatgaatataca 26942364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 39521672 - 39521916
Alignment:
Q  1 tcatcactatttctgattacatgaaagtgatcagatatagtgcccccactagttcttaatttttagaagggaatttatttt-----------------gc 83  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||                 ||    
T  39521672 tcataactatttctgattacatgaatgtgatcagatatagtgcccccactagttcttaatttttagaaggaaatttatttttcccccgataatgttgtgc 39521771  T
Q  84 tcccactagtgcccccactattctttagtttaaaggggtaaatatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcata 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39521772 tcccactagtgcccccactattctttagtttaaaggggtaaatatttacatagaaatcggcgtcttttaattctatgatcactttaacatttaggtcata 39521871  T
Q  184 aaacctatatgtttcgctatttatagcatacccaatgaatataca 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  39521872 aaacctatatgtttcgctatttatagcatacccaatgaatataca 39521916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 41999950 - 42000192
Alignment:
Q  1 tcatcactatttctgattacatgaaagtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgc----------------- 83  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                     
T  41999950 tcataactatttctgattacatgaaagtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgcccccactaatgtcgtgc 42000049  T
Q  84 tcccactagtgcccccactattctttagtttaaaggggtaaatatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcata 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||    
T  42000050 tcccactagtgcccccactattctttagtttaaaggggtaaatatttacatagaaatcggcgtcttttaattctatgatcactttaaca--taggtcata 42000147  T
Q  184 aaacctatatgtttcgctatttatagcatacccaatgaatataca 228  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  42000148 aaacctatatgttttgctatttatagcatacccaatgaatataca 42000192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 36939066 - 36938822
Alignment:
Q  1 tcatcactatttctgattacatgaaagtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgc----------------- 83  Q
    |||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||                     
T  36939066 tcataactatttctgattacacgaatgtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgcccccactaatgtcgtgc 36938967  T
Q  84 tcccactagtgcccccactattctttagtttaaaggggtaaatatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcata 183  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  36938966 tcccactagtgcccccactattctttagtttcgaggggtaaatatttacatagaaatcggcgtcttttaattctataatcactttaacatttaggtcata 36938867  T
Q  184 aaacctatatgtttcgctatttatagcatacccaatgaatataca 228  Q
    || ||||||||||| ||||||||||||||||||||||||||||||    
T  36938866 aagcctatatgttttgctatttatagcatacccaatgaatataca 36938822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 36426886 - 36427126
Alignment:
Q  1 tcatcactatttctgattacatgaaagtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgc----------------- 83  Q
    |||| ||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||                     
T  36426886 tcataactatttatgattacatgaatgtgatcaaatatagtgcccccactagttcttaatttttagaagggaatttattttgcccccaataatgttgtgc 36426985  T
Q  84 tcccactagtgcccccactattctttagtttaaaggggtaaatat--ttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtca 181  Q
    |||||||||||||||||||||||||||||| ||||||||||||||  || ||||||||| | | |||||||||||||||||||||||| |||||| ||||    
T  36426986 tcccactagtgcccccactattctttagtt-aaaggggtaaatatatttccatagaaatcgacatcttttaattctatgatcactttagcatttaagtca 36427084  T
Q  182 taaaacctatatgtttcgctatttatagcatacccaatgaata 224  Q
    | |||| |||||| |||||| ||||||||||||| ||||||||    
T  36427085 t-aaacttatatgcttcgctgtttatagcatacctaatgaata 36427126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 6 - 224
Target Start/End: Original strand, 9911871 - 9912087
Alignment:
Q  6 actatttctgattacatgaaagtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgctcccactagtgcccccactatt 105  Q
    ||||||| ||||||| |||| |||||||||| ||||||||||||||||  ||||| |  | | ||||||||| ||| |  ||||||||||| ||||||||    
T  9911871 actatttatgattacttgaatgtgatcagatgtagtgcccccactagtcattaatataca-aggggaatttaatttacctccactagtgcctccactatt 9911969  T
Q  106 ctttagtttaaaggggtaaatatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgtttcgctattt 205  Q
    ||||| ||||  ||||||  ||||| ||||||||| ||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  9911970 ctttaatttacgggggtacttattt-catagaaatcggcatcttttaattctatgatcactttagcatttaggtcataaaatctatatgtttcgctattt 9912068  T
Q  206 atagcatacccaatgaata 224  Q
    ||| |||||| ||| ||||    
T  9912069 ataacatacctaattaata 9912087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 224
Target Start/End: Complemental strand, 13585143 - 13585072
Alignment:
Q  153 attctatgatcactttaacatttaggtcataaaacctatatgtttcgctatttatagcatacccaatgaata 224  Q
    ||||||||||||||||| | || ||||||||||||||||||| ||  || ||||  ||||||||||||||||    
T  13585143 attctatgatcactttagctttaaggtcataaaacctatatgctttactgtttaaggcatacccaatgaata 13585072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 225
Target Start/End: Complemental strand, 25686302 - 25686230
Alignment:
Q  153 attctatgatcactttaacatttaggtcataaaacctatatgtttcgctatttatagcatacccaatgaatat 225  Q
    |||||| ||||||||||  |||||||||| |||||||||||| || ||| |||| |||| |||| ||||||||    
T  25686302 attctaagatcactttagtatttaggtcaaaaaacctatatgctttgctgtttaaagcacacccgatgaatat 25686230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 8886471 - 8886698
Alignment:
Q  1 tcatcactatttctgattacatgaaagtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgctcccactagtgccccca 100  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  8886471 tcataactatttatgattacatgaaagtgatcagatatagtgcccccactagttcttaatttttagaaggaaatttattttgcccccactagtgccccca 8886570  T
Q  101 ctattctttagtttaaaggggtaaatatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgtttcgc 200  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  8886571 ctattctttagtttcaaggggtaaatatttacatagaaatcggcgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgttttgc 8886670  T
Q  201 tatttatagcatacccaatgaatataca 228  Q
    |||||||| |||||||||||||||||||    
T  8886671 tatttataacatacccaatgaatataca 8886698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 23662970 - 23662743
Alignment:
Q  1 tcatcactatttctgattacatgaaagtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgctcccactagtgccccca 100  Q
    |||| ||||||| ||||||||||||  |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  23662970 tcataactatttttgattacatgaatatgatcagatatagtgcccccactagttcttgatttttagaaggaaatttattttgctcccactagtgccccca 23662871  T
Q  101 ctattctttagtttaaaggggtaaatatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgtttcgc 200  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23662870 ctattctttagtttaaaggggtaaatatttacatagaaatcagcgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgtttcgc 23662771  T
Q  201 tatttatagcatacccaatgaatataca 228  Q
    ||||||||||||||||||||||||||||    
T  23662770 tatttatagcatacccaatgaatataca 23662743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 3686631 - 3686875
Alignment:
Q  1 tcatcactatttctgattacatgaaagtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgc----------------- 83  Q
    |||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||                     
T  3686631 tcataactatttctgattacacgaatgtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgcccccactaatgtcgtgc 3686730  T
Q  84 tcccactagtgcccccactattctttagtttaaaggggtaaatatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcata 183  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3686731 tcccactagtgcccccactattctttagtttcaaggggtaaatatttacatagaaatcggcgtcttttaattctatgatcactttaacatttaggtcata 3686830  T
Q  184 aaacctatatgtttcgctatttatagcatacccaatgaatataca 228  Q
    || ||||||||||| ||||||||||||||||||||||||||||||    
T  3686831 aagcctatatgttttgctatttatagcatacccaatgaatataca 3686875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 18470459 - 18470699
Alignment:
Q  1 tcatcactatttctgattacatgaaagtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgc----------------- 83  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||                     
T  18470459 tcataactatttctgattacatgaatgtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttattttgcccccactaatgtcgtgc 18470558  T
Q  84 tcccactagtgcccccactattctttagtttaaaggggtaaatat--ttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtca 181  Q
    |||||||||||||||||||||||||||||| ||||||||||||||  || ||||||||| | | |||||||||||||||||||||||| |||||||||||    
T  18470559 tcccactagtgcccccactattctttagtt-aaaggggtaaatatattttcatagaaatcgccatcttttaattctatgatcactttagcatttaggtca 18470657  T
Q  182 taaaacctatatgtttcgctatttatagcatacccaatgaata 224  Q
    | ||||||||||| |||||| ||||||||||||| ||||||||    
T  18470658 t-aaacctatatgcttcgctgtttatagcatacctaatgaata 18470699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 12967393 - 12967154
Alignment:
Q  1 tcatcactatttctgattacatgaaagtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgctccca------------ 88  Q
    |||| ||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||                
T  12967393 tcataactatttatgattactggaatgtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttattttgcccccaataatgttgcgc 12967294  T
Q  89 -----ctagtgcccccactattctttagtttaaaggggtaaatatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcata 183  Q
         ||||| |||||||||||||||| |||||| ||||||||||||| ||||||||   | || ||| ||||||||||||||||| |||||||||||||    
T  12967293 ccccactagttcccccactattcttta-tttaaatgggtaaatatttatatagaaatcaacatcgttttattctatgatcactttagcatttaggtcata 12967195  T
Q  184 aaacctatatgtttcgctatttatagcatacccaatgaata 224  Q
    ||||||||||| ||  ||||||||| |||||||||||||||    
T  12967194 aaacctatatgattttctatttataacatacccaatgaata 12967154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 85 - 224
Target Start/End: Complemental strand, 38206106 - 38205970
Alignment:
Q  85 cccactagtgcccccactattctttagtttaaaggggtaaatatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcataa 184  Q
    |||| ||||||||||||||||||||| |||||| ||| |  ||||| ||||||| | ||| |   || ||| | ||||||||||| |||||| |||||||    
T  38206106 cccattagtgcccccactattctttaatttaaaagggcatttattttcatagaagtcggcat---ttgattttttgatcactttatcatttaagtcataa 38206010  T
Q  185 aacctatatgtttcgctatttatagcatacccaatgaata 224  Q
    |||||| | ||||  ||||| |||||||||||||||||||    
T  38206009 aacctacaagtttttctattaatagcatacccaatgaata 38205970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 24756037 - 24755848
Alignment:
Q  1 tcatcactatttctgattacatgaaa-gtgatcagatatagtgcccccactagttcttaatttttagaagg-gaatttattttgctcccactagtgcccc 98  Q
    |||| ||||||||||||||| ||||| ||||||||||||| |||||||| ||||||||||  | || |||| ||||||| |||   |||||||||| |||    
T  24756037 tcataactatttctgattac-tgaaatgtgatcagatatactgcccccaatagttcttaa--tatacaaggagaatttagtttatccccactagtggccc 24755941  T
Q  99 cactattctttagtttaaaggggtaaatatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcataaaacctata 192  Q
    |||||||||||| |||| |||||||  |  || |||||||||     || ||| | | |||||||||||||||||||| || ||||||||||||    
T  24755940 cactattctttaatttacaggggtacttgctt-catagaaatcaatatcgtttgactttatgatcactttaacatttaagttataaaacctata 24755848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 24765034 - 24764845
Alignment:
Q  1 tcatcactatttctgattacatgaaa-gtgatcagatatagtgcccccactagttcttaatttttagaagg-gaatttattttgctcccactagtgcccc 98  Q
    |||| ||||||||||||||| ||||| ||||||||||||| |||||||| ||||||||||  | || |||| ||||||| |||   |||||||||| |||    
T  24765034 tcataactatttctgattac-tgaaatgtgatcagatatactgcccccaatagttcttaa--tatacaaggagaatttagtttatccccactagtggccc 24764938  T
Q  99 cactattctttagtttaaaggggtaaatatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcataaaacctata 192  Q
    |||||||||||| |||| |||||||  |  || |||||||||     || ||| | | |||||||||||||||||||| || ||||||||||||    
T  24764937 cactattctttaatttacaggggtacttgctt-catagaaatcaatatcgtttgactttatgatcactttaacatttaagttataaaacctata 24764845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 85 - 194
Target Start/End: Complemental strand, 48434922 - 48434812
Alignment:
Q  85 cccactagtgcccccactattct-ttagtttaaaggggtaaatatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcata 183  Q
    ||||||||||||||||||||| | ||| |||||||||| |  || || |||||||||   | |||||| ||||||||||||| | |||||||| ||||||    
T  48434922 cccactagtgcccccactattttcttaatttaaaggggaatttaatttcatagaaatcatcatcttttgattctatgatcacataaacatttaagtcata 48434823  T
Q  184 aaacctatatg 194  Q
    |||| ||||||    
T  48434822 aaacttatatg 48434812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 30654133 - 30654360
Alignment:
Q  1 tcatcactatttctgattacatgaaagtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgctcccactagtgccccca 100  Q
    |||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  30654133 tcataactatttctgattacacgaatgtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgcccccactagtgccccca 30654232  T
Q  101 ctattctttagtttaaaggggtaaatatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgtttcgc 200  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||    
T  30654233 ctattctttagtttcaaggggtaaatatttacatagaaatcggcgtcttttaattctatgatcactttaacatttaggtcataaagcctatatgttttgc 30654332  T
Q  201 tatttatagcatacccaatgaatataca 228  Q
    ||||||||||||||||||||||||||||    
T  30654333 tatttatagcatacccaatgaatataca 30654360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 17972227 - 17971995
Alignment:
Q  1 tcatcactatttctgattacatgaaagtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgctcccacta-----gtgc 95  Q
    |||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||     ||||    
T  17972227 tcataactatttctgattacacgaatgtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgcccccactaatgtcgtgc 17972128  T
Q  96 ccccactattctttagtttaaaggggtaaatatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgt 195  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  17972127 ccccactattctttagtttcaaggggtaaatatttacatagaaatcggcgtcttttaattctatgatcactttaacatttaggtcataaagcctatatgt 17972028  T
Q  196 ttcgctatttatagcatacccaatgaatataca 228  Q
    || ||||||||||||||||||||||||||||||    
T  17972027 tttgctatttatagcatacccaatgaatataca 17971995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 30649434 - 30649678
Alignment:
Q  1 tcatcactatttctgattacatgaaagtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgc----------------- 83  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||                     
T  30649434 tcataactatttctgattacatgaatgtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgcccccactaatgtcgtgc 30649533  T
Q  84 tcccactagtgcccccactattctttagtttaaaggggtaaatatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcata 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  30649534 tcccactagtgcccccactattctttagtttaaaggggtaaatatttacatagaaatcggcgtcttttaattctatgatcactttaacatttaggtcata 30649633  T
Q  184 aaacctatatgtttcgctatttatagcatacccaatgaatataca 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  30649634 aaacctatatgtttcgctatttatagcatacccaatgaatataca 30649678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 9182272 - 9182051
Alignment:
Q  1 tcatcactatttctgattacatgaaagtgatcagatatagtgcccccactagttcttaatttttagaag-ggaatttattttgctcccactagtgccccc 99  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |  | ||| |||||||| ||| | |||||||||||||||    
T  9182272 tcataactatttctgattacatgaatgtgatcagatatagtgcccccactagttcttaatat--acaagaggaatttagttttcccccactagtgccccc 9182175  T
Q  100 actattctttagtttaaaggggtaaatatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgtttcg 199  Q
    ||||||||||| ||||  ||||||  || || |||||||||   | ||||||||||||||||||||||||||||||||||||||||||||| ||| |||     
T  9182174 actattctttaatttacgggggtacttactt-catagaaatcaacatcttttaattctatgatcactttaacatttaggtcataaaacctacatgcttca 9182076  T
Q  200 ctatttatagcatacccaatgaata 224  Q
     |||||||| |||||| ||||||||    
T  9182075 ttatttataacatacctaatgaata 9182051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 85 - 193
Target Start/End: Complemental strand, 25480317 - 25480210
Alignment:
Q  85 cccactagtgcccccactattctttagtttaaaggggtaaatatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcataa 184  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||   |||| ||| ||||||||||||||||| ||||||||||||||    
T  25480317 cccactagtgcccccactattcttaagtt-aaaggggtaaatatttacatataaatcaacgtcgttttattctatgatcactttagcatttaggtcataa 25480219  T
Q  185 aacctatat 193  Q
    |||||||||    
T  25480218 aacctatat 25480210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 85 - 193
Target Start/End: Complemental strand, 25487923 - 25487816
Alignment:
Q  85 cccactagtgcccccactattctttagtttaaaggggtaaatatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcataa 184  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||   |||| ||| ||||||||||||||||| ||||||||||||||    
T  25487923 cccactagtgcccccactattcttaagtt-aaaggggtaaatatttacatataaatcaacgtcgttttattctatgatcactttagcatttaggtcataa 25487825  T
Q  185 aacctatat 193  Q
    |||||||||    
T  25487824 aacctatat 25487816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 30616187 - 30616404
Alignment:
Q  1 tcatcactatttctgattacatgaaagtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgctcccactagtgccccca 100  Q
    |||| |||||||||||||||  ||| |||||||||| || |||||||| ||  |||||||||  | |||| |||||| ||| | ||||||||| |||| |    
T  30616187 tcataactatttctgattactcgaatgtgatcagatgtaatgcccccaataactcttaattt--aaaaggaaatttagttttcccccactagtacccc-a 30616283  T
Q  101 ctattctttagtttaaaggggtaaatatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgtttcgc 200  Q
    |||||||||| ||||  ||||||  |||||  || |||||   | || ||| ||||||||||||||||| ||||||| ||| |||||||||||| || ||    
T  30616284 ctattctttaatttactggggtatttatttt-attgaaatcaacatcgtttgattctatgatcactttagcatttagatcacaaaacctatatggtttgc 30616382  T
Q  201 tatttatagcatacccaatgaa 222  Q
    |||||||| |||||||||||||    
T  30616383 tatttatatcatacccaatgaa 30616404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 88 - 222
Target Start/End: Original strand, 28450564 - 28450698
Alignment:
Q  88 actagtgcccccactattctttagtttaaaggggtaaatatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcat-aaaa 186  Q
    ||||||||| ||||||||||||| ||||||| ||||  |||||| ||||||||   | |  ||||||| |||| |||||||| |||||||||||| ||||    
T  28450564 actagtgccaccactattcttta-tttaaagaggtatttatttagatagaaatcaacattgtttaattttatgctcactttagcatttaggtcataaaaa 28450662  T
Q  187 cctatatgtttcgctatttatagcatacccaatgaa 222  Q
    |||||||| |  |||||||||| |||||||||||||    
T  28450663 cctatatgatctgctatttataacatacccaatgaa 28450698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 6 - 224
Target Start/End: Complemental strand, 27417730 - 27417511
Alignment:
Q  6 actatttctgattacatgaaagtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgct-cccactagtgcccccactat 104  Q
    |||||||||||||||  ||| |||||||||| ||||||||| |  || |||||||||| | ||| |||||||||||  | |||| ||||||||||||| |    
T  27417730 actatttctgattacgcgaacgtgatcagatgtagtgcccctataagctcttaattttaaaaagagaatttattttttttcccattagtgcccccactct 27417631  T
Q  105 tctttagtttaaaggggtaaatatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgtttcgctatt 204  Q
    | |||| |||| | |||||  | ||| |||| | ||         |||||||||| ||||||||| ||||| |||||||||||||| ||| || || |||    
T  27417630 tatttaatttacatgggtatttcttttcatatatatcaataaaaattaattctataatcactttagcatttcggtcataaaacctagatgctttgcaatt 27417531  T
Q  205 tatagcatacccaatgaata 224  Q
    ||| ||||||| ||||||||    
T  27417530 tatggcatacctaatgaata 27417511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 25480390 - 25480340
Alignment:
Q  1 tcatcactatttctgattacatgaaagtgatcagatatagtgcccccacta 51  Q
    |||| ||||||||||||||| | || |||||||||||||||||||||||||    
T  25480390 tcataactatttctgattacttaaatgtgatcagatatagtgcccccacta 25480340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 25487996 - 25487946
Alignment:
Q  1 tcatcactatttctgattacatgaaagtgatcagatatagtgcccccacta 51  Q
    |||| ||||||||||||||| | || |||||||||||||||||||||||||    
T  25487996 tcataactatttctgattacttaaatgtgatcagatatagtgcccccacta 25487946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 224
Target Start/End: Complemental strand, 40036226 - 40036114
Alignment:
Q  112 tttaaaggggtaaatatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgtttcgctatttatagca 211  Q
    |||||||||| |  ||||| |||||||||  || || ||| ||| |||||||||||||  ||||| |||||||| | |||||| || |||||||| | ||    
T  40036226 tttaaaggggaatttattttcatagaaatcagcatcatttgattatatgatcactttagaatttatgtcataaaccttatatgctttgctatttaaaaca 40036127  T
Q  212 tacccaatgaata 224  Q
    ||||| |||||||    
T  40036126 tacccgatgaata 40036114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 28450448 - 28450510
Alignment:
Q  1 tcatcactatttctgattacatgaaagtgatcagatatagtgcccccactagttcttaatttt 63  Q
    |||| ||||||||||||||   ||| ||||||| |||||||||||||||||  ||||||||||    
T  28450448 tcataactatttctgattaatggaatgtgatcatatatagtgcccccactaactcttaatttt 28450510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 181; Significance: 6e-98; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 4239882 - 4239650
Alignment:
Q  1 tcatcactatttctgattacatgaaagtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgctcccacta-----gtgc 95  Q
    |||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||     ||||    
T  4239882 tcataactatttctgattacacgaatgtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgcccccactaatgtcgtgc 4239783  T
Q  96 ccccactattctttagtttaaaggggtaaatatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgt 195  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  4239782 ccccactattctttagtttcaaggggtaaatatttacatagaaatcggcgtcttttaattctatgatcactttaacatttaggtcataaagcctatatgt 4239683  T
Q  196 ttcgctatttatagcatacccaatgaatataca 228  Q
    || ||||||||||||||||||||||||||||||    
T  4239682 tttgctatttatagcatacccaatgaatataca 4239650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 40127447 - 40127203
Alignment:
Q  1 tcatcactatttctgattacatgaaagtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgctcccacta--------- 91  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||             
T  40127447 tcataactatttctgattacatgaatgtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgcccccactaatgtcgtgc 40127348  T
Q  92 --------gtgcccccactattctttagtttaaaggggtaaatatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcata 183  Q
            ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  40127347 tcccgctagtgcccccactattctttagtttaaaggggtaaatatttacattgaaatcggcgtcttttaattctatgatcactttaacatttaggtcata 40127248  T
Q  184 aaacctatatgtttcgctatttatagcatacccaatgaatataca 228  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  40127247 aaacctatatgttttgctatttatagcatacccaatgaatataca 40127203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 23083437 - 23083205
Alignment:
Q  1 tcatcactatttctgattacatgaaagtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgctcccacta-----gtgc 95  Q
    |||| |||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |  |   ||     ||||    
T  23083437 tcataactatttctgattacatgaatgtgatcagatatagttcccccactatttcttaatttttagaagggaatttatttttccgcagataatgttgtgc 23083338  T
Q  96 ccccactattctttagtttaaaggggtaaatatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgt 195  Q
    |||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  23083337 ccccactattctgtagtttaaaggggtaaatatctacatagaaatcggcgtcttttaattctatgatcactttaacatttaggtaataaaacctatatgt 23083238  T
Q  196 ttcgctatttatagcatacccaatgaatataca 228  Q
    |||||||||||||||||||||||||||||||||    
T  23083237 ttcgctatttatagcatacccaatgaatataca 23083205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 38184146 - 38183937
Alignment:
Q  1 tcatcactatttctgattacatgaaagtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgctcccactagtgccccca 100  Q
    |||| |||||||||||||||  ||| |||||||||||||||||||| |||||||| ||||||| | |||| |||| ||||| |            |||||    
T  38184146 tcataactatttctgattactggaatgtgatcagatatagtgcccctactagttcgtaattttaa-aaggaaattgattttac------------cccca 38184060  T
Q  101 ctattctttagtttaaaggggtaaatatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgtttcgc 200  Q
    ||||||||||||| |||| ||||||||||||||||||||| | | |||||||||||||||||||||||| ||||||||||||||||||||||| |||| |    
T  38184059 ctattctttagtt-aaagaggtaaatatttacatagaaatcgacatcttttaattctatgatcactttagcatttaggtcataaaacctatatatttccc 38183961  T
Q  201 tatttatagcatacccaatgaata 224  Q
    ||||||||||||||||||||||||    
T  38183960 tatttatagcatacccaatgaata 38183937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 17023479 - 17023717
Alignment:
Q  1 tcatcactatttctgattacatgaaagtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttg------ct---------- 84  Q
    |||| |||||||||||||||  ||| ||||||||||||||||||||||||||||| |||||||||  |||||||||||||||      ||              
T  17023479 tcataactatttctgattactggaatgtgatcagatatagtgcccccactagttcataatttttaatagggaatttattttgtccctactaatgtcgtga 17023578  T
Q  85 -cccactagtgcccccactattctttagtttaaaggggtaaatatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcata 183  Q
     |||||||| |||||||||||||||||||| |||||||||||||||| |||||||||  || |||||||||| ||||||||||||||||||||||||||     
T  17023579 acccactagcgcccccactattctttagtt-aaaggggtaaatattttcatagaaatcagcatcttttaattttatgatcactttaacatttaggtcat- 17023676  T
Q  184 aaacctatatgtttcgctatttatagcatacccaatgaata 224  Q
    ||||||||||| |||||| ||||| ||||||| ||||||||    
T  17023677 aaacctatatgcttcgctgtttattgcatacctaatgaata 17023717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 17553972 - 17554210
Alignment:
Q  1 tcatcactatttctgattacatgaaagtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttg------ct---------- 84  Q
    |||| |||||||||||||||  ||| ||||||||||||||||||||||||||||| |||||||||  |||||||||||||||      ||              
T  17553972 tcataactatttctgattactggaatgtgatcagatatagtgcccccactagttcataatttttaatagggaatttattttgtccctactaatgtcgtga 17554071  T
Q  85 -cccactagtgcccccactattctttagtttaaaggggtaaatatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcata 183  Q
     |||||||| |||||||||||||||||||| |||||||||||||||| |||||||||  || |||||||||| ||||||||||||||||||||||||||     
T  17554072 acccactagcgcccccactattctttagtt-aaaggggtaaatattttcatagaaatcagcatcttttaattttatgatcactttaacatttaggtcat- 17554169  T
Q  184 aaacctatatgtttcgctatttatagcatacccaatgaata 224  Q
    ||||||||||| |||||| ||||| ||||||| ||||||||    
T  17554170 aaacctatatgcttcgctgtttattgcatacctaatgaata 17554210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 96 - 224
Target Start/End: Original strand, 34116990 - 34117117
Alignment:
Q  96 ccccactattctttagtttaaaggggtaaatatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgt 195  Q
    ||||| ||||||||| ||||||||||||||||| |||||||||||   | || ||| ||||||||||||||||| ||||||||||||||||||||||||     
T  34116990 ccccagtattcttta-tttaaaggggtaaatatgtacatagaaatcaacatcattttattctatgatcactttagcatttaggtcataaaacctatatga 34117088  T
Q  196 ttcgctatttatagcatacccaatgaata 224  Q
    ||  ||||||||| |||||||||||||||    
T  34117089 ttttctatttataacatacccaatgaata 34117117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 25369288 - 25369068
Alignment:
Q  1 tcatcactatttctgattacatgaaagtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgctcccactagtgccccca 100  Q
    |||| |||||||||||||||   || |||||||||||||||||||||||||||||||||| |  | | ||||||||| ||| | ||||||||||||| ||    
T  25369288 tcataactatttctgattactcaaatgtgatcagatatagtgcccccactagttcttaatataca-aggggaatttaatttacccccactagtgccctca 25369190  T
Q  101 ctattctttagtttaaaggggtaaatatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgtttcgc 200  Q
    |||||||||| |||| |||||| |  |  | |||||||||   | || ||| | | ||||||||||||| |||||||||||||||||||||| | ||  |    
T  25369189 ctattctttaatttacaggggt-accagcttcatagaaatcaacatcgtttgactttatgatcactttagcatttaggtcataaaacctataagctttcc 25369091  T
Q  201 tatttatagcatacccaatgaat 223  Q
    || |||||  |||||||||||||    
T  25369090 taattatattatacccaatgaat 25369068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 6 - 223
Target Start/End: Complemental strand, 8320177 - 8319964
Alignment:
Q  6 actatttctgattacatgaaagtgatcagatatagtgcccccactagttcttaatttttagaaggg-aatttattttgctcccactagtgcccccactat 104  Q
    ||||||| |||||||   || |||||||||||||||||||||||| |||||||||    | ||||| |||||| ||| | ||||||||||||||||||||    
T  8320177 actatttatgattactcaaatgtgatcagatatagtgcccccactggttcttaat----acaaggggaatttagtttacccccactagtgcccccactat 8320082  T
Q  105 tctttagtttaaaggggtaaatatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgtttcgctatt 204  Q
    |||||| |||| |||||||  ||  | |||||||||   | |  ||||| | ||||||||||||| |||||| ||||||||||||||| | ||| ||| |    
T  8320081 tctttaatttacaggggtac-tagcttcatagaaatcaacataatttaactttatgatcactttagcatttaagtcataaaacctataagcttccctaat 8319983  T
Q  205 tatagcatacccaatgaat 223  Q
    ||||||||| |||||||||    
T  8319982 tatagcatatccaatgaat 8319964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 194
Target Start/End: Complemental strand, 4539971 - 4539861
Alignment:
Q  85 cccactagtgcccccactattct-ttagtttaaaggggtaaatatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcata 183  Q
    ||||| ||||||||||||||| | ||| |||||||||| |  || || |||||||||   | || ||| ||||||||||||| | |||||||||||| ||    
T  4539971 cccaccagtgcccccactattttcttaatttaaaggggaatttaatttcatagaaatcatcatcgtttgattctatgatcacatcaacatttaggtcgta 4539872  T
Q  184 aaacctatatg 194  Q
    |||||||||||    
T  4539871 aaacctatatg 4539861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 192
Target Start/End: Original strand, 19952790 - 19952829
Alignment:
Q  153 attctatgatcactttaacatttaggtcataaaacctata 192  Q
    ||||||||||||| |||||||||| |||||||||||||||    
T  19952790 attctatgatcacattaacatttaagtcataaaacctata 19952829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 3e-44; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 5 - 150
Target Start/End: Complemental strand, 16836389 - 16836227
Alignment:
Q  5 cactatttctgattacatgaaagtgatcagatatagtgcccccactagttcttaatttttagaagggaatttatttt-----------------gctccc 87  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||                 ||||||    
T  16836389 cactatttctgattacatgaatgtgatcagatatagtgcccccactagttcttaatttttagaaggaaaattatttttcccccgataatgttgtgctccc 16836290  T
Q  88 actagtgcccccactattctttagtttaaaggggtaaatatttacatagaaattggcgtcttt 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  16836289 actagtgcccccactattctttagtttaaaggggtaaatatttacatagaaatcggcgtcttt 16836227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 8 - 224
Target Start/End: Complemental strand, 15998165 - 15997949
Alignment:
Q  8 tatttctgattacatgaaagtgatcagatatagtgcccccactagttcttaat-ttttagaagggaatttattttgctcccactagtgcccccactattc 106  Q
    ||||||||||||   ||| ||||||||||||| ||||| |||||| ||||||| ||||| ||||||||||||| | | ||||||||||||||||||||||    
T  15998165 tatttctgattattggaatgtgatcagatataatgccctcactagctcttaattttttaaaagggaatttattgttc-cccactagtgcccccactattc 15998067  T
Q  107 tttagtttaaaggggtaaatatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgtttcgctattta 206  Q
    ||||  ||| |||||||  ||| | | ||||  |  || ||  ||  |||||||||||||||| |||||||||||||||||||||||| ||| | |||||    
T  15998066 tttaagttacaggggtacttatcttcgtagacgtcagcatcgattgtttctatgatcactttagcatttaggtcataaaacctatatgcttcacaattta 15997967  T
Q  207 tagcatacccaatgaata 224  Q
     |||||||  ||||||||    
T  15997966 aagcatacttaatgaata 15997949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 12796319 - 12796138
Alignment:
Q  1 tcatcactatttctgattacatgaaagtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgctcccactagtgccccca 100  Q
    |||| |||||||||||||||  ||| |||||  |||| |||||||| ||||||| |||||||||| |||||||  |||||||  ||  ||||||||||||    
T  12796319 tcataactatttctgattactcgaatgtgatttgataaagtgcccctactagtttttaattttta-aagggaaactattttg--cctcctagtgccccca 12796223  T
Q  101 ctattctttagtttaaaggggtaaatatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcataaaa 186  Q
    ||||||| || ||||||||||||  ||||||||| ||||| ||  || ||| ||||||| | ||||| | ||||||||||||||||    
T  12796222 ctattctata-tttaaaggggtatttatttacattgaaatcgggatcgtttgattctataaccacttaagcatttaggtcataaaa 12796138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 224
Target Start/End: Complemental strand, 17285292 - 17285200
Alignment:
Q  132 catagaaattggcgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgtttcgctatttatagcatacccaatgaata 224  Q
    |||||||||| ||||| ||| |||||||||||| |||| | || ||||||||||| ||||||| ||  || ||||  ||||||||||||||||    
T  17285292 catagaaattagcgtcatttcattctatgatcattttagctttaaggtcataaaagctatatgctttactgtttaaggcatacccaatgaata 17285200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 224
Target Start/End: Original strand, 10490808 - 10490879
Alignment:
Q  153 attctatgatcactttaacatttaggtcataaaacctatatgtttcgctatttatagcatacccaatgaata 224  Q
    ||||||||||||||||| | |  ||||||||||||||||||| ||  || ||||  ||||||||||||||||    
T  10490808 attctatgatcactttagcttcaaggtcataaaacctatatgctttactctttaaggcatacccaatgaata 10490879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 224
Target Start/End: Original strand, 19481272 - 19481343
Alignment:
Q  153 attctatgatcactttaacatttaggtcataaaacctatatgtttcgctatttatagcatacccaatgaata 224  Q
    ||||||||||||||||| | || ||||||||||||||||||  ||  || ||||  ||||||||||||||||    
T  19481272 attctatgatcactttagctttaaggtcataaaacctatattctttactgtttaaggcatacccaatgaata 19481343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 90 - 224
Target Start/End: Original strand, 21667919 - 21668051
Alignment:
Q  90 tagtgcccccactattctttagtttaaaggggtaaatatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcataaaacct 189  Q
    ||||||| ||||||||||||| ||  ||||||||||||||||||||||||| | | |||||||||| ||||||||||||| |||||||||||||||| ||    
T  21667919 tagtgcctccactattctttattt--aaggggtaaatatttacatagaaatcgacatcttttaattatatgatcactttagcatttaggtcataaaatct 21668016  T
Q  190 atatgtttcgctatttatagcatacccaatgaata 224  Q
    ||||| ||| ||||||||| ||||| |||||||||    
T  21668017 atatgattcactatttataacatactcaatgaata 21668051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 6 - 91
Target Start/End: Complemental strand, 10389912 - 10389827
Alignment:
Q  6 actatttctgattacatgaaagtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgctcccacta 91  Q
    |||||||||||||||  ||||||||| |||||||||||||| |||||||||||||||||| |||  |||||||||| | |||||||    
T  10389912 actatttctgattactggaaagtgattagatatagtgccccaactagttcttaatttttaaaagacaatttatttttcccccacta 10389827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 10389739 - 10389672
Alignment:
Q  157 tatgatcactttaacatttaggtcataaaacctatatgtttcgctatttatagcatacccaatgaata 224  Q
    ||||||| ||||| ||||||||| |||||| ||||||||||| |||||||||||||||||| ||||||    
T  10389739 tatgatccctttagcatttaggtgataaaatctatatgtttcactatttatagcatacccattgaata 10389672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 21667804 - 21667878
Alignment:
Q  1 tcatcactatttctgattacatgaaa-gtgatcagatatagtgcccccactagttcttaatttttagaagggaatt 75  Q
    |||| ||||||||||||||  ||||| |||||||||||| |||||||||||| ||||||||||||| |||||||||    
T  21667804 tcataactatttctgattat-tgaaatgtgatcagatattgtgcccccactaattcttaatttttaaaagggaatt 21667878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 15984869 - 15984936
Alignment:
Q  157 tatgatcactttaacatttaggtcataaaacctatatgtttcgctatttatagcatacccaatgaata 224  Q
    ||||| ||||||| ||||||| ||||||||| |||||| || |||||||||  |||||||||||||||    
T  15984869 tatgaccactttagcatttagttcataaaacttatatgctttgctatttatgtcatacccaatgaata 15984936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 61835 - 62055
Alignment:
Q  1 tcatcactatttctgattacatgaaagtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgctcccactagtgccccca 100  Q
    |||| |||||||||||||||   || |||||||||||||||||||||||||||||||||| |  | | ||||||||| ||| | ||||||||||||| ||    
T  61835 tcataactatttctgattactcaaatgtgatcagatatagtgcccccactagttcttaatataca-aggggaatttaatttacccccactagtgccctca 61933  T
Q  101 ctattctttagtttaaaggggtaaatatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgtttcgc 200  Q
    |||||||||| |||| |||||| |  |  | |||||||||   | || ||| | | ||||||||||||| |||||||||||||||||||||| | ||  |    
T  61934 ctattctttaatttacaggggt-accagcttcatagaaatcaacatcgtttgactttatgatcactttagcatttaggtcataaaacctataagctttcc 62032  T
Q  201 tatttatagcatacccaatgaat 223  Q
    || |||||  |||||||||||||    
T  62033 taattatattatacccaatgaat 62055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 66037 - 66096
Alignment:
Q  1 tcatcactatttctgattacatgaaagtgatcagatatagtgcccccactagttcttaat 60  Q
    |||| |||||||||||||||   || ||||||||||||||||||||||||||||||||||    
T  66037 tcataactatttctgattactcaaatgtgatcagatatagtgcccccactagttcttaat 66096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 95 - 224
Target Start/End: Original strand, 81675 - 81804
Alignment:
Q  95 cccccactattctttagtttaaagggg-taaatatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcataaaacctatat 193  Q
    |||||||||||||||| |||| ||||| ||  || || |||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  81675 cccccactattctttaatttacagggggtacttactt-catagaaatcagcatcttttaattctatgatcactttaacatttaggtcataaaacctatat 81773  T
Q  194 gtttcgctatttatagcatacccaatgaata 224  Q
    | |||| |||||||| |||| | ||||||||    
T  81774 gcttcgttatttataacatatctaatgaata 81804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 28 - 224
Target Start/End: Complemental strand, 712 - 516
Alignment:
Q  28 tgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgctcccactagtgcccccactattctttagtttaaaggggta-aat 126  Q
    |||||||||||||||||||||||||||| |||| |  | | ||||||||| ||| | ||||||||||| |||||||||||||| |||| ||||||| |||    
T  712 tgatcagatatagtgcccccactagttcataatataca-aggggaatttagtttacccccactagtgctcccactattctttaatttacaggggtacaat 614  T
Q  127 atttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgtttcgctatttatagcatacccaatgaata 224  Q
       | |||| ||||  || || ||| | | ||||||||| ||| ||||||||||||||||| |||| | ||| ||| |||||||||||||||||||||    
T  613 tacttcataaaaatcagcatcatttgactttatgatcacgttagcatttaggtcataaaacatataagcttccctaattatagcatacccaatgaata 516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 49580 - 49351
Alignment:
Q  1 tcatcactatttctgattacatgaaa-gtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgctccca-ctagtgcccc 98  Q
    |||| ||||||||||||||| ||||| ||||||||||||| | |||||||||||||||||| |  | | ||||||||| ||| | |||| ||||||||||    
T  49580 tcataactatttctgattac-tgaaatgtgatcagatatactacccccactagttcttaatataca-aggggaatttagtttacccccaactagtgcccc 49483  T
Q  99 cactattctttagtttaaaggggta--aatatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgtt 196  Q
    |||||||||||| |||| |||||||  | ||  | |||||||||   | || ||| | | |||| ||| |||| |||||||||||||||||||||| | |    
T  49482 cactattctttaatttacaggggtagtactagcttcatagaaatcaacatcgtttgactttatggtcaatttagcatttaggtcataaaacctataagct 49383  T
Q  197 tcgctatttatagcatacccaatgaatataca 228  Q
    || ||| |||||||||||||||||||| ||||    
T  49382 tccctaattatagcatacccaatgaatgtaca 49351  T

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Target: scaffold0067 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 224
Target Start/End: Complemental strand, 31099 - 31030
Alignment:
Q  155 tctatgatcactttaacatttaggtcataaaacctatatgtttcgctatttatagcatacccaatgaata 224  Q
    ||||||||||||||| | |||| ||||||||||||||||| ||  |||||||  ||||||||||||||||    
T  31099 tctatgatcactttagcttttatgtcataaaacctatatgctttactatttaaggcatacccaatgaata 31030  T

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Target: scaffold0011 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 224
Target Start/End: Original strand, 4686 - 4778
Alignment:
Q  132 catagaaattggcgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgtttcgctatttatagcatacccaatgaata 224  Q
    |||||||||  | ||| ||| ||| ||||||||||||| | || ||||||||||| ||||||| ||  || ||||  ||||||||||||||||    
T  4686 catagaaatcagagtcatttgattatatgatcactttagctttaaggtcataaaagctatatgctttactgtttaaggcatacccaatgaata 4778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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