View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20739_low_2 (Length: 759)

Name: NF20739_low_2
Description: NF20739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20739_low_2
NF20739_low_2
[»] chr3 (19 HSPs)
chr3 (216-727)||(4271694-4272206)
chr3 (224-423)||(42346596-42346798)
chr3 (622-725)||(25713426-25713529)
chr3 (620-727)||(24574904-24575011)
chr3 (631-728)||(33119622-33119719)
chr3 (64-128)||(4271538-4271603)
chr3 (651-727)||(6784086-6784162)
chr3 (633-712)||(24150832-24150911)
chr3 (3-54)||(4271443-4271494)
chr3 (631-712)||(19552148-19552229)
chr3 (631-712)||(26555817-26555898)
chr3 (631-712)||(35730935-35731016)
chr3 (631-712)||(36055007-36055088)
chr3 (631-712)||(38682429-38682510)
chr3 (655-711)||(34292505-34292561)
chr3 (619-703)||(45215410-45215494)
chr3 (631-715)||(50900444-50900528)
chr3 (64-106)||(54540751-54540793)
chr3 (631-672)||(43151162-43151203)
[»] chr7 (10 HSPs)
chr7 (621-727)||(31494232-31494338)
chr7 (631-727)||(47031248-47031344)
chr7 (626-721)||(24939640-24939735)
chr7 (652-727)||(36355468-36355543)
chr7 (644-728)||(32630714-32630798)
chr7 (632-728)||(48545802-48545899)
chr7 (639-706)||(32630649-32630716)
chr7 (1-62)||(46483546-46483607)
chr7 (631-712)||(151861-151942)
chr7 (631-712)||(27418642-27418723)
[»] chr2 (10 HSPs)
chr2 (631-727)||(27090638-27090734)
chr2 (622-728)||(2372963-2373069)
chr2 (619-728)||(30046113-30046222)
chr2 (619-728)||(30137157-30137266)
chr2 (622-728)||(24936122-24936228)
chr2 (622-728)||(25684806-25684912)
chr2 (639-703)||(2485652-2485716)
chr2 (622-705)||(18176476-18176559)
chr2 (624-712)||(29940941-29941029)
chr2 (631-727)||(38822919-38823016)
[»] chr5 (7 HSPs)
chr5 (624-728)||(7857021-7857125)
chr5 (654-711)||(9689337-9689394)
chr5 (631-671)||(6902692-6902732)
chr5 (64-106)||(36486449-36486491)
chr5 (64-128)||(1797235-1797300)
chr5 (64-105)||(28538774-28538815)
chr5 (631-712)||(40410593-40410674)
[»] chr1 (8 HSPs)
chr1 (622-727)||(9191125-9191230)
chr1 (3-57)||(35594220-35594274)
chr1 (631-705)||(51826843-51826917)
chr1 (3-48)||(11436045-11436090)
chr1 (631-712)||(26882826-26882907)
chr1 (622-703)||(27198265-27198346)
chr1 (64-128)||(44411904-44411969)
chr1 (631-712)||(45318463-45318544)
[»] chr8 (14 HSPs)
chr8 (644-724)||(14723940-14724020)
chr8 (543-624)||(12185574-12185655)
chr8 (543-624)||(12430002-12430083)
chr8 (624-725)||(24296639-24296740)
chr8 (543-624)||(12174065-12174143)
chr8 (543-624)||(12418493-12418571)
chr8 (623-712)||(2112786-2112875)
chr8 (631-712)||(42274975-42275056)
chr8 (639-725)||(38806866-38806952)
chr8 (631-712)||(1606013-1606094)
chr8 (631-712)||(29260276-29260357)
chr8 (632-712)||(43605364-43605444)
chr8 (64-114)||(18979072-18979123)
chr8 (3-48)||(42982710-42982755)
[»] chr6 (2 HSPs)
chr6 (622-728)||(35164798-35164904)
chr6 (3-51)||(12382761-12382809)
[»] chr4 (5 HSPs)
chr4 (644-727)||(5116977-5117060)
chr4 (64-106)||(31600946-31600988)
chr4 (1-57)||(1289098-1289155)
chr4 (631-712)||(8584005-8584086)
chr4 (3-48)||(48781098-48781143)
[»] scaffold0016 (1 HSPs)
scaffold0016 (631-712)||(81782-81863)
[»] scaffold0045 (1 HSPs)
scaffold0045 (3-53)||(49132-49182)


Alignment Details
Target: chr3 (Bit Score: 444; Significance: 0; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 216 - 727
Target Start/End: Original strand, 4271694 - 4272206
Alignment:
Q  216 aagattgcgaggaagatttgaagggtctcacgaaaagtgaggttactgtgattgacacaagttgtcgagtgtggaaggttgataaatttgttttcagaaa 315  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4271694 aagattgcgaggaagatttgaagggtttcacgaaaagtgaggttactgtgattgacacaagttgtcgagtgtggaaggttgataaatttgttttcagaaa 4271793  T
Q  316 gaataattggaaaataagagagaggaaacaaaagaacaagtttgttgcgaagaagaagagtaaattgactcatgagcttgatattcatggaattggttcc 415  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4271794 gaatgattggaaaataagagagaggaaacaaaagaacaagtttgttgcgaagaagaagagtaaattgactcgtgagcttgatattcatggaattggttcc 4271893  T
Q  416 tccaagtatagnnnnnnnaactcgtaccattattgtacttaatcgagattcagaaaaagagacaatgggattaagctgaatctggattggatttgggttt 515  Q
    |||||||||||       |||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  4271894 tccaagtatagtttttttaactcgtaccattgctgtacttaatcgagattcaaaaaaagagacaatgggattaagctgaatctggattggatttgggttt 4271993  T
Q  516 aagctgaataattttctattgcaacttaacagttccaccaacaatgatttttcagcaaagtgtctatggaactctttccaatctgg-aagcagcagaagc 614  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  4271994 aagctgaatagttttctattgcagcttaacagttccaccaacaatgatttttcagcaaagtgtctatggaactctttccaatctggaaagcagtagaagc 4272093  T
Q  615 aaaagacttaggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaag 714  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4272094 aaaagacttaggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatttttaaag 4272193  T
Q  715 attagaaataatt 727  Q
    |||||||||||||    
T  4272194 attagaaataatt 4272206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 224 - 423
Target Start/End: Original strand, 42346596 - 42346798
Alignment:
Q  224 gaggaagatttgaagggtctcacgaaaagtgaggttactgtgattgacacaagttgtcgagtgtggaaggttgataaatttgttttcagaaagaataat- 322  Q
    ||||||||||| |||||| ||||||||||||||||||||||||| ||||| ||||||| ||||||||| |||||||| ||||| ||||||| |||||||     
T  42346596 gaggaagatttcaagggtttcacgaaaagtgaggttactgtgatagacacgagttgtccagtgtggaaagttgataagtttgtgttcagaaggaataatg 42346695  T
Q  323 --tggaaaataagagagaggaaacaaaagaacaagtttgttgcgaagaagaagagtaaattgactcatgagcttgatattcatggaattggttcctccaa 420  Q
      |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||| |||||||||||||| ||||||||    
T  42346696 tttggaaaatcagagagaggaaacaaaagaacaagtttgtagcgaagaagaagagtaaatcgacccatgagcttgacattcatggaattgggtcctccaa 42346795  T
Q  421 gta 423  Q
    |||    
T  42346796 gta 42346798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 622 - 725
Target Start/End: Complemental strand, 25713529 - 25713426
Alignment:
Q  622 ttaggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaa 721  Q
    |||||||| ||||||| |||||||||| |||||||||||||||| ||||| || ||||||||||||||| |||||| |||||||| || |||||||||||    
T  25713529 ttaggagggtgtattgaattgggatttcgaaggattttaaaagagtttttagttatagaaaaatcttgaggtattccatcaagattttaaaagattagaa 25713430  T
Q  722 ataa 725  Q
    ||||    
T  25713429 ataa 25713426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 620 - 727
Target Start/End: Complemental strand, 24575011 - 24574904
Alignment:
Q  620 acttaggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattag 719  Q
    ||||||| || || |||| |||||||||| |||| ||||||||||| ||||| || ||| |||||||||||  |||||||||||||| || |||||||||    
T  24575011 acttagggggatgaattgaattgggattttgaagaattttaaaagactttttagttataaaaaaatcttgagatattcaatcaagattttaaaagattag 24574912  T
Q  720 aaataatt 727  Q
    ||||||||    
T  24574911 aaataatt 24574904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 631 - 728
Target Start/End: Complemental strand, 33119719 - 33119622
Alignment:
Q  631 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaataattt 728  Q
    ||||||| |||||||| | ||||||||||||||||| |||| || ||| |||||| | || ||||||||||||||| || ||||||||||||||||||    
T  33119719 tgtattgaattgggatattgaaggattttaaaagatattttagttataaaaaaatttcgaggtattcaatcaagattttaaaagattagaaataattt 33119622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 128
Target Start/End: Original strand, 4271538 - 4271603
Alignment:
Q  64 tttgcaactttgattctttttgttaattttgacaggtcaatg-ctacatgacacgccacatgtgta 128  Q
    |||||||||||||| |||||||| ||||||||| |||||||| ||| |||||||||||||||||||    
T  4271538 tttgcaactttgatcctttttgtcaattttgaccggtcaatgtctatatgacacgccacatgtgta 4271603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 651 - 727
Target Start/End: Complemental strand, 6784162 - 6784086
Alignment:
Q  651 aaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaataatt 727  Q
    |||||||||| |||| ||||| || ||| |||||||||||  |||||||||||||| || |||||||||||||||||    
T  6784162 aaggattttataagactttttagttatacaaaaatcttgagatattcaatcaagattttaaaagattagaaataatt 6784086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 633 - 712
Target Start/End: Complemental strand, 24150911 - 24150832
Alignment:
Q  633 tattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 712  Q
    |||||||||| |||||  ||||||||||||||||||||| ||  || ||||||||||  ||||||||||||||| |||||    
T  24150911 tattggattgagatttcaaaggattttaaaagatttttttgttttataaaaatcttgtggtattcaatcaagatttttaa 24150832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 4271443 - 4271494
Alignment:
Q  3 taaattgcacttttccacctttaactttcaaaaatttgtaattttgacctct 54  Q
    ||||||| ||||||| | ||||||||||||||||||||||||||||| ||||    
T  4271443 taaattgtacttttctatctttaactttcaaaaatttgtaattttgatctct 4271494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 631 - 712
Target Start/End: Complemental strand, 19552229 - 19552148
Alignment:
Q  631 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 712  Q
    |||||||||||| |||||  |||||||||||||||||||||  |  || |||| |||||  ||||||||||||||| |||||    
T  19552229 tgtattggattgagattttaaaggattttaaaagatttttttattttataaaagtcttgtggtattcaatcaagatttttaa 19552148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 631 - 712
Target Start/End: Original strand, 26555817 - 26555898
Alignment:
Q  631 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 712  Q
    |||||||||||| |||||  ||||||||||||||| ||||| ||  || |||| |||||  ||||||||||||||| |||||    
T  26555817 tgtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttttaa 26555898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 631 - 712
Target Start/End: Original strand, 35730935 - 35731016
Alignment:
Q  631 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 712  Q
    |||||||||||| |||||  ||||||||||||||||||||| ||  || |||| |||||   |||||||||||||| |||||    
T  35730935 tgtattggattgagatttcaaaggattttaaaagatttttttgttttataaaagtcttgtgatattcaatcaagatttttaa 35731016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 631 - 712
Target Start/End: Complemental strand, 36055088 - 36055007
Alignment:
Q  631 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 712  Q
    |||||||||||| |||||  ||||||||||||||| ||||| ||  || |||| |||||  ||||||||||||||| |||||    
T  36055088 tgtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttttaa 36055007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 631 - 712
Target Start/End: Original strand, 38682429 - 38682510
Alignment:
Q  631 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 712  Q
    ||||||| |||| |||||  ||||||||||||||| ||||| ||  || ||||||||||  ||||||||||||||| |||||    
T  38682429 tgtattgtattgagatttcaaaggattttaaaagacttttttgttttaaaaaaatcttgtggtattcaatcaagatttttaa 38682510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 655 - 711
Target Start/End: Complemental strand, 34292561 - 34292505
Alignment:
Q  655 attttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatcttta 711  Q
    |||||||||||||||||   |||| |||||||||| |||||||||||||||| ||||    
T  34292561 attttaaaagattttttaaaaataaaaaaatcttgtagtattcaatcaagattttta 34292505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 619 - 703
Target Start/End: Complemental strand, 45215494 - 45215410
Alignment:
Q  619 gacttaggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaa 703  Q
    ||||||||||| ||||||  |||  |||||| | ||||||||||||| |||||  ||||| ||||||||||  ||||||||||||    
T  45215494 gacttaggagggtgtattaaattaagatttgaagggattttaaaagactttttaataataaaaaaatcttgtggtattcaatcaa 45215410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 631 - 715
Target Start/End: Complemental strand, 50900528 - 50900444
Alignment:
Q  631 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaaga 715  Q
    |||||||||||  |||||  ||||||||||||||| ||||| ||  || |||| |||||  ||||||||||||||| ||||||||    
T  50900528 tgtattggattaagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttttaaaga 50900444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 106
Target Start/End: Complemental strand, 54540793 - 54540751
Alignment:
Q  64 tttgcaactttgattctttttgttaattttgacaggtcaatgc 106  Q
    |||||||||||||| |||||||| ||||||||| |||||||||    
T  54540793 tttgcaactttgatcctttttgtcaattttgaccggtcaatgc 54540751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 631 - 672
Target Start/End: Original strand, 43151162 - 43151203
Alignment:
Q  631 tgtattggattgggatttggaaggattttaaaagattttttg 672  Q
    ||||||| |||||||||| |||||||||||||||| ||||||    
T  43151162 tgtattgaattgggattttgaaggattttaaaagactttttg 43151203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 6e-39; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 621 - 727
Target Start/End: Original strand, 31494232 - 31494338
Alignment:
Q  621 cttaggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattaga 720  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||| || ||||||||||    
T  31494232 cttaggagggtgtattggattgggatttggaaggattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagattttaaaagattaga 31494331  T
Q  721 aataatt 727  Q
    |||||||    
T  31494332 aataatt 31494338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 631 - 727
Target Start/End: Original strand, 47031248 - 47031344
Alignment:
Q  631 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaataatt 727  Q
    ||||||| |||||||||| |||||||||||||| | |||||||| |||||||||||||||  |||||||||||||| || ||| |||| ||||||||    
T  47031248 tgtattgaattgggattttgaaggattttaaaaaactttttggttatagaaaaatcttgagatattcaatcaagattttaaaaaattataaataatt 47031344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 626 - 721
Target Start/End: Complemental strand, 24939735 - 24939640
Alignment:
Q  626 gaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaa 721  Q
    |||| ||||||| ||||||| || ||| |||||||||||| |||||||| ||||||||||||||| ||||||||||| ||| || |||||||||||    
T  24939735 gagggtgtattgcattgggagttcgaaagattttaaaagactttttggttatagaaaaatcttgaggtattcaatcatgattttaaaagattagaa 24939640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 652 - 727
Target Start/End: Complemental strand, 36355543 - 36355468
Alignment:
Q  652 aggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaataatt 727  Q
    ||||||||||| ||||||||||| ||| ||||||| ||| ||||||||||||||| || |||||||||||||||||    
T  36355543 aggattttaaatgattttttggttataaaaaaatcgtgaggtattcaatcaagattttaaaagattagaaataatt 36355468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 644 - 728
Target Start/End: Original strand, 32630714 - 32630798
Alignment:
Q  644 gatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaataattt 728  Q
    ||||| ||||||||||||| || |||||| | ||| ||||||||||| ||||||||||||| | || ||||||||||||||||||    
T  32630714 gattttgaaggattttaaatgactttttgcttataaaaaaatcttgaggtattcaatcaagcttttaaaagattagaaataattt 32630798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 632 - 728
Target Start/End: Complemental strand, 48545899 - 48545802
Alignment:
Q  632 gtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaa-tcttgaagtattcaatcaagatctttaaagattagaaataattt 728  Q
    |||||| |||| ||||| ||| |||||||||||||||||| ||  || ||||| |||||| ||||||||||||||| || || |||||||||||||||    
T  48545899 gtattgaattgagattttgaaagattttaaaagattttttagttctaaaaaaaatcttgaggtattcaatcaagattttaaaggattagaaataattt 48545802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 639 - 706
Target Start/End: Original strand, 32630649 - 32630716
Alignment:
Q  639 attgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagat 706  Q
    |||| ||||| ||||||||||||| ||  ||||||| ||| ||||||||||| |||||||||||||||    
T  32630649 attgagattttgaaggattttaaatgacgttttggttataaaaaaatcttgaggtattcaatcaagat 32630716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 46483607 - 46483546
Alignment:
Q  1 gttaaattgcacttttccacctttaactttcaaaaatttgtaattttga-cctctaagattta 62  Q
    |||||| ||||||||||| ||||||||||| ||||| |||||||||||| || ||||||||||    
T  46483607 gttaaagtgcacttttcc-cctttaacttttaaaaacttgtaattttgatcccctaagattta 46483546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 631 - 712
Target Start/End: Original strand, 151861 - 151942
Alignment:
Q  631 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 712  Q
    |||||||||||| |||||  ||||||||||||||| ||||| ||  || |||| |||||   |||||||||||||| |||||    
T  151861 tgtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtgatattcaatcaagatttttaa 151942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 631 - 712
Target Start/End: Complemental strand, 27418723 - 27418642
Alignment:
Q  631 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 712  Q
    |||| ||||||| |||||  ||||||||||||||| ||||| ||  || |||| |||||  ||||||||||||||| |||||    
T  27418723 tgtactggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttttaa 27418642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 6e-33; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 631 - 727
Target Start/End: Original strand, 27090638 - 27090734
Alignment:
Q  631 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaataatt 727  Q
    ||||||||||||||||||  || ||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  27090638 tgtattggattgggatttccaaagattttaaaagattttttggttatagaaaaatcttgaagtattcaatcaagattttaaaagattagaaataatt 27090734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 622 - 728
Target Start/End: Original strand, 2372963 - 2373069
Alignment:
Q  622 ttaggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaa 721  Q
    |||||| | ||||||| |||||||||| |||||||||||||||| ||||| || ||||||||||||||| ||||||||||||||| || |||||||||||    
T  2372963 ttaggatggtgtattgaattgggatttcgaaggattttaaaagacttttttgttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaa 2373062  T
Q  722 ataattt 728  Q
    |||||||    
T  2373063 ataattt 2373069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 619 - 728
Target Start/End: Original strand, 30046113 - 30046222
Alignment:
Q  619 gacttaggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagatta 718  Q
    |||||||| |||||||||  |||| ||||| ||||||||||||| || |||||||| ||| ||||||||||| ||||||||||| ||| || ||| ||||    
T  30046113 gacttagggggttgtattaaattgagattttgaaggattttaaatgactttttggttataaaaaaatcttgaggtattcaatcatgattttaaaatatta 30046212  T
Q  719 gaaataattt 728  Q
    ||||||||||    
T  30046213 gaaataattt 30046222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 619 - 728
Target Start/End: Original strand, 30137157 - 30137266
Alignment:
Q  619 gacttaggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagatta 718  Q
    |||||||| |||||||||  |||| ||||| ||||||||||||| || |||||||| ||| ||||||||||| ||||||||||| ||| || ||| ||||    
T  30137157 gacttagggggttgtattaaattgagattttgaaggattttaaatgactttttggttataaaaaaatcttgaggtattcaatcatgattttaaaatatta 30137256  T
Q  719 gaaataattt 728  Q
    ||||||||||    
T  30137257 gaaataattt 30137266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 622 - 728
Target Start/End: Complemental strand, 24936228 - 24936122
Alignment:
Q  622 ttaggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaa 721  Q
    ||||| |||||||||  |||| ||||| ||||||||||||| || |||||||| ||| |||||||||||  |||||||||| ||| || |||||||||||    
T  24936228 ttagggggttgtattcaattgagattttgaaggattttaaatgactttttggttataaaaaaatcttgagttattcaatcatgattttaaaagattagaa 24936129  T
Q  722 ataattt 728  Q
    |||||||    
T  24936128 ataattt 24936122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 622 - 728
Target Start/End: Complemental strand, 25684912 - 25684806
Alignment:
Q  622 ttaggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaa 721  Q
    ||||| |||||||||  |||| ||||| ||||||||||||| || |||||||| ||| |||||||||||  |||||||||| ||| || |||||||||||    
T  25684912 ttagggggttgtattcaattgagattttgaaggattttaaatgactttttggttataaaaaaatcttgagttattcaatcatgattttaaaagattagaa 25684813  T
Q  722 ataattt 728  Q
    |||||||    
T  25684812 ataattt 25684806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 639 - 703
Target Start/End: Complemental strand, 2485716 - 2485652
Alignment:
Q  639 attgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaa 703  Q
    |||||||||| |||| |||||||||||||||||||| |||||||||||||||  |||||||||||    
T  2485716 attgggatttcgaagaattttaaaagattttttggttatagaaaaatcttgagatattcaatcaa 2485652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 622 - 705
Target Start/End: Complemental strand, 18176559 - 18176476
Alignment:
Q  622 ttaggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaaga 705  Q
    |||||||| ||||||| |||  |||||| | |||||||||||||||||||  ||||| ||||||||||  ||||||||||||||    
T  18176559 ttaggagggtgtattgaattaagatttgaagggattttaaaagattttttaataataaaaaaatcttgtggtattcaatcaaga 18176476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 624 - 712
Target Start/End: Original strand, 29940941 - 29941029
Alignment:
Q  624 aggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 712  Q
    |||||| |||||||||||| |||||  ||||||||||||||| ||||| ||  || |||| |||||  ||||||||||||||| |||||    
T  29940941 aggagggtgtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttttaa 29941029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 631 - 727
Target Start/End: Complemental strand, 38823016 - 38822919
Alignment:
Q  631 tgtattggattgggatttggaaggattttaaaagattttt-tggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaataatt 727  Q
    ||||||| ||||  |||| |||||||| ||||||| |||| | || ||| |||||||| || | ||||||||||||| || |||||||||||||||||    
T  38823016 tgtattgaattgaaattttgaaggattgtaaaagacttttatagttataaaaaaatctcgaggcattcaatcaagattttaaaagattagaaataatt 38822919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 624 - 728
Target Start/End: Original strand, 7857021 - 7857125
Alignment:
Q  624 aggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaat 723  Q
    |||||| |||||| ||||| ||||| |||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||| || |||||||||||||    
T  7857021 aggagggtgtattagattgagatttagaaggattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaaat 7857120  T
Q  724 aattt 728  Q
    |||||    
T  7857121 aattt 7857125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 654 - 711
Target Start/End: Complemental strand, 9689394 - 9689337
Alignment:
Q  654 gattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatcttta 711  Q
    ||||||||||||||||||  | ||| ||||||||||| ||||||||||||||| ||||    
T  9689394 gattttaaaagattttttaattataaaaaaatcttgaggtattcaatcaagattttta 9689337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 631 - 671
Target Start/End: Complemental strand, 6902732 - 6902692
Alignment:
Q  631 tgtattggattgggatttggaaggattttaaaagatttttt 671  Q
    |||||||||||| |||||||||||||||||||||| |||||    
T  6902732 tgtattggattgagatttggaaggattttaaaagacttttt 6902692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 106
Target Start/End: Complemental strand, 36486491 - 36486449
Alignment:
Q  64 tttgcaactttgattctttttgttaattttgacaggtcaatgc 106  Q
    |||||||||||||| |||||||| ||||||||| |||||||||    
T  36486491 tttgcaactttgatcctttttgtcaattttgaccggtcaatgc 36486449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 1797300 - 1797235
Alignment:
Q  64 tttgcaactttgattctttttgttaattttgacaggtcaatg-ctacatgacacgccacatgtgta 128  Q
    |||||||||||||||| |||| | ||||||||| |||||||| |||  || |||||||||||||||    
T  1797300 tttgcaactttgattccttttttcaattttgaccggtcaatgcctatgtggcacgccacatgtgta 1797235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 28538774 - 28538815
Alignment:
Q  64 tttgcaactttgattctttttgttaattttgacaggtcaatg 105  Q
    |||||||||||||| |||||||| ||||||||| ||||||||    
T  28538774 tttgcaactttgatcctttttgtcaattttgaccggtcaatg 28538815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 631 - 712
Target Start/End: Original strand, 40410593 - 40410674
Alignment:
Q  631 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 712  Q
    |||||||||||| |||||  | ||||||||||||| ||||| ||  || |||| |||||  ||||||||||||||| |||||    
T  40410593 tgtattggattgagatttcaatggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttttaa 40410674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 9e-29; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 622 - 727
Target Start/End: Original strand, 9191125 - 9191230
Alignment:
Q  622 ttaggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaa 721  Q
    |||||||| |||||||||||| |||||||||  ||||||||||| |||||||| |||||||||||||||  |||||||||||||| || |||||||||||    
T  9191125 ttaggagggtgtattggattgagatttggaaaaattttaaaagactttttggttatagaaaaatcttgagttattcaatcaagattttaaaagattagaa 9191224  T
Q  722 ataatt 727  Q
    ||||||    
T  9191225 ataatt 9191230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 35594220 - 35594274
Alignment:
Q  3 taaattgcacttttccacctttaactttcaaaaatttgtaattttgacctctaag 57  Q
    |||| ||||||||||||||  ||||||||||||| ||| |||||||||| |||||    
T  35594220 taaagtgcacttttccacccctaactttcaaaaacttgcaattttgacccctaag 35594274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 631 - 705
Target Start/End: Complemental strand, 51826917 - 51826843
Alignment:
Q  631 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaaga 705  Q
    ||||||| |||  |||||| | ||||||||||||| |||||  ||||| ||||||||||  ||||||||||||||    
T  51826917 tgtattgaattaagatttgaagggattttaaaagactttttaataataaaaaaatcttgtggtattcaatcaaga 51826843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 11436045 - 11436090
Alignment:
Q  3 taaattgcacttttccacctttaactttcaaaaatttgtaattttg 48  Q
    |||| ||||||||||| ||||||||||||||||| ||| |||||||    
T  11436045 taaagtgcacttttccccctttaactttcaaaaacttgcaattttg 11436090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 631 - 712
Target Start/End: Complemental strand, 26882907 - 26882826
Alignment:
Q  631 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 712  Q
    |||||||||||| |||||  ||||||||||||||| ||||| ||  || |||| |||||   |||||||||||||| |||||    
T  26882907 tgtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtgttattcaatcaagatttttaa 26882826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 622 - 703
Target Start/End: Original strand, 27198265 - 27198346
Alignment:
Q  622 ttaggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaa 703  Q
    |||||||| |||||||||||| || ||  | ||||||||||||| |||||| | ||| |||| |||||  ||||||||||||    
T  27198265 ttaggagggtgtattggattgagactttaagggattttaaaagactttttgtttataaaaaagtcttgtggtattcaatcaa 27198346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 44411969 - 44411904
Alignment:
Q  64 tttgcaactttgattctttttgttaattttgacaggtcaatg-ctacatgacacgccacatgtgta 128  Q
    |||||||||||||| |||||||  ||||||||| |||||||| |||| || |||||||| ||||||    
T  44411969 tttgcaactttgatcctttttgccaattttgaccggtcaatgcctacgtggcacgccacgtgtgta 44411904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 631 - 712
Target Start/End: Original strand, 45318463 - 45318544
Alignment:
Q  631 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 712  Q
    |||||||||||| |||||  ||||||||||||||| ||||| ||  || |||| ||||   ||||||||||||||| |||||    
T  45318463 tgtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttctggtattcaatcaagatttttaa 45318544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 9e-26; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 644 - 724
Target Start/End: Complemental strand, 14724020 - 14723940
Alignment:
Q  644 gatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaata 724  Q
    |||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||| || ||||||||||||||    
T  14724020 gatttggaaggattttaaaagacttttttgttatagaaaaatcttgaagtattcaatcaagattttaaaagattagaaata 14723940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 543 - 624
Target Start/End: Complemental strand, 12185655 - 12185574
Alignment:
Q  543 aacagttccaccaacaatgatttttcagcaaagtgtctatggaactctttccaatctggaagcagcagaagcaaaagactta 624  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||| |||||||| || ||||||||    
T  12185655 aacagttccaccagcaatgaattttcagcaaagtgtctatggaactcttcccaatctggaaacagcagaaacagaagactta 12185574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 543 - 624
Target Start/End: Complemental strand, 12430083 - 12430002
Alignment:
Q  543 aacagttccaccaacaatgatttttcagcaaagtgtctatggaactctttccaatctggaagcagcagaagcaaaagactta 624  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||| |||||||| || ||||||||    
T  12430083 aacagttccaccagcaatgaattttcagcaaagtgtctatggaactcttcccaatctggaaacagcagaaacagaagactta 12430002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 624 - 725
Target Start/End: Complemental strand, 24296740 - 24296639
Alignment:
Q  624 aggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaat 723  Q
    |||||| ||||||| |||||||||| ||| |||||||||||| |||||||| ||||||||||||||| ||||||||||| ||| || |||||||| ||||    
T  24296740 aggagggtgtattgaattgggatttcgaaagattttaaaagactttttggttatagaaaaatcttgaggtattcaatcatgattttaaaagattataaat 24296641  T
Q  724 aa 725  Q
    ||    
T  24296640 aa 24296639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 543 - 624
Target Start/End: Complemental strand, 12174143 - 12174065
Alignment:
Q  543 aacagttccaccaacaatgatttttcagcaaagtgtctatggaactctttccaatctggaagcagcagaagcaaaagactta 624  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||   ||||||||||||||| |||| |||||||||||    
T  12174143 aacagttccaccagcaatgaattttcagcaaagtgtctatggaactc---ccaatctggaagcagtagaaacaaaagactta 12174065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 543 - 624
Target Start/End: Complemental strand, 12418571 - 12418493
Alignment:
Q  543 aacagttccaccaacaatgatttttcagcaaagtgtctatggaactctttccaatctggaagcagcagaagcaaaagactta 624  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||   ||||||||||||||| |||| |||||||||||    
T  12418571 aacagttccaccagcaatgaattttcagcaaagtgtctatggaactc---ccaatctggaagcagtagaaacaaaagactta 12418493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 623 - 712
Target Start/End: Original strand, 2112786 - 2112875
Alignment:
Q  623 taggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 712  Q
    ||||||| |||||||||||| |||||  ||||||||||||||| ||||| ||  || |||| |||||  ||||||||||||||| |||||    
T  2112786 taggagggtgtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttttaa 2112875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 631 - 712
Target Start/End: Original strand, 42274975 - 42275056
Alignment:
Q  631 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 712  Q
    |||||||||||| |||||  ||||||||||||||||||||| ||  || |||| |||||  ||||||||||||||| |||||    
T  42274975 tgtattggattgagatttcaaaggattttaaaagatttttttgttttataaaagtcttgtggtattcaatcaagatttttaa 42275056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 639 - 725
Target Start/End: Complemental strand, 38806952 - 38806866
Alignment:
Q  639 attgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaataa 725  Q
    |||||||||| ||  ||||||| |||| ||||  || ||| ||||||||||| ||||||||||||||| || | |||||||||||||    
T  38806952 attgggattttgatagattttagaagacttttaagttataaaaaaatcttgaggtattcaatcaagattttaacagattagaaataa 38806866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 631 - 712
Target Start/End: Complemental strand, 1606094 - 1606013
Alignment:
Q  631 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 712  Q
    |||||||||||| |||||  ||||||||||||||| ||||| ||  || |||| |||||  ||||||||||||||| |||||    
T  1606094 tgtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttttaa 1606013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 631 - 712
Target Start/End: Complemental strand, 29260357 - 29260276
Alignment:
Q  631 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 712  Q
    |||||||||||| |||||  ||||||||||||||| ||||| ||  || |||| |||||  ||||||||||||||| |||||    
T  29260357 tgtattggattgagattttaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttttaa 29260276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 632 - 712
Target Start/End: Complemental strand, 43605444 - 43605364
Alignment:
Q  632 gtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 712  Q
    ||||||||||| |||||  ||||||||||||||| ||||| ||  || |||| |||||  ||||||||||||||| |||||    
T  43605444 gtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttttaa 43605364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 114
Target Start/End: Complemental strand, 18979123 - 18979072
Alignment:
Q  64 tttgcaactttgattctttttgttaattttgacaggtcaatg-ctacatgac 114  Q
    |||||||||||||| |||||||  |||||||||||||||||| |||||||||    
T  18979123 tttgcaactttgatcctttttgccaattttgacaggtcaatgcctacatgac 18979072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 42982755 - 42982710
Alignment:
Q  3 taaattgcacttttccacctttaactttcaaaaatttgtaattttg 48  Q
    |||| ||||||||||||||||||| ||| ||||| |||||||||||    
T  42982755 taaagtgcacttttccacctttaagttttaaaaagttgtaattttg 42982710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 8e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 622 - 728
Target Start/End: Original strand, 35164798 - 35164904
Alignment:
Q  622 ttaggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaa 721  Q
    ||||| |||||||||  |||| ||||| ||||||||||||| || |||||||| ||| |||||||||||  |||||||||| ||| || |||||||||||    
T  35164798 ttagggggttgtattcaattgagattttgaaggattttaaatgactttttggttataaaaaaatcttgagttattcaatcatgattttaaaagattagaa 35164897  T
Q  722 ataattt 728  Q
    |||||||    
T  35164898 ataattt 35164904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 12382809 - 12382761
Alignment:
Q  3 taaattgcacttttccacctttaactttcaaaaatttgtaattttgacc 51  Q
    |||| ||||||||||||||| ||| ||| ||||||||||||||||||||    
T  12382809 taaagtgcacttttccacctctaatttttaaaaatttgtaattttgacc 12382761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 644 - 727
Target Start/End: Original strand, 5116977 - 5117060
Alignment:
Q  644 gatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaataatt 727  Q
    ||||||||| ||||||||||||  ||||  | ||| ||||||||| | ||||||||||||||| || | |||||||||||||||    
T  5116977 gatttggaaagattttaaaagaccttttaattataaaaaaatcttaaggtattcaatcaagattttaagagattagaaataatt 5117060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 106
Target Start/End: Complemental strand, 31600988 - 31600946
Alignment:
Q  64 tttgcaactttgattctttttgttaattttgacaggtcaatgc 106  Q
    |||||||||||||| |||||||| ||||||||| |||||||||    
T  31600988 tttgcaactttgatcctttttgtcaattttgaccggtcaatgc 31600946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 1289098 - 1289155
Alignment:
Q  1 gttaaattgcacttttccacctttaactttcaaaaatttgtaattttga-cctctaag 57  Q
    |||||| || |||||||| || |||||||||||| |||||||||||||| ||||||||    
T  1289098 gttaaagtgaacttttccccccttaactttcaaatatttgtaattttgatcctctaag 1289155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 631 - 712
Target Start/End: Complemental strand, 8584086 - 8584005
Alignment:
Q  631 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 712  Q
    |||||||||||| |||||  ||||||||||||||| |||||  |  || |||| |||||  ||||||||||||||| |||||    
T  8584086 tgtattggattgagatttcaaaggattttaaaagacttttttattttataaaagtcttgtggtattcaatcaagatttttaa 8584005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 48781143 - 48781098
Alignment:
Q  3 taaattgcacttttccacctttaactttcaaaaatttgtaattttg 48  Q
    |||| ||||||||||| ||| ||||||||||||||||| |||||||    
T  48781143 taaagtgcacttttccccctctaactttcaaaaatttgcaattttg 48781098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 631 - 712
Target Start/End: Complemental strand, 81863 - 81782
Alignment:
Q  631 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 712  Q
    |||||||||||| |||||  ||||||||||||||| ||||| ||  || |||| |||||  ||||||||||||||| |||||    
T  81863 tgtattggattgagattttaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttttaa 81782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 49182 - 49132
Alignment:
Q  3 taaattgcacttttccacctttaactttcaaaaatttgtaattttgacctc 53  Q
    ||||||||||||||||||| |||||||| ||||| ||| ||||||| ||||    
T  49182 taaattgcacttttccacccttaacttttaaaaacttgcaattttggcctc 49132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University