View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20739_low_3 (Length: 670)

Name: NF20739_low_3
Description: NF20739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20739_low_3
NF20739_low_3
[»] chr1 (1 HSPs)
chr1 (18-657)||(26860178-26860810)


Alignment Details
Target: chr1 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 18 - 657
Target Start/End: Complemental strand, 26860810 - 26860178
Alignment:
Q  18 gtaatatacatcaattgatgaatcaatggatcattttggtatacagtaaaatcttattaaatcaattggttggatatatcaacaatattcgatattatgt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26860810 gtaatatacatcaattgatgaatcaatggatcattttggtatacagtaaaatcttattaaatcaattggttggatatatcaacaatattcgatattatgt 26860711  T
Q  118 ggctagaagagtcttgtcaaaataaatggcatatagcaaagataagattcatataaaagtcagtaatcacctttcttcacatttagcgtattaattattg 217  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26860710 ggctagaagagtcttgtcaaaataaatggcatatagcaaagatatgattcatataaaagtcagtaatcacctttcttcacatttagcgtattaattattg 26860611  T
Q  218 taaaattttcaaatagattcaaagtttttgacccttatatttatgtaatttgttttgatttcttgtgtttactttagattttatattgctataaaaattg 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  26860610 taaaattttcaaatagattcaaagtttttgacccttatatttatgt-atttgttttgatttcttgtgtttattttagattttgtattgctataaaaattg 26860512  T
Q  318 ttttttagcggttaaactacccccaccaaaattgtcatatggaagaattgaatatgagatctcaaaagaataacactttaaaaggttacgagccaactcc 417  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||      
T  26860511 ttttttagcggttaaactacccccatcaaaattgtcatatggaagaattgaatatgagacctcaaaagaataacattttaaaaggttgcgagccaact-- 26860414  T
Q  418 ggccaaccaaatgagcttgctacaaaagttatattactttgctcctaaaagagataaaaattgttgttcccatt-nnnnnnntgttatgacaaacctgca 516  Q
         ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||        ||||||||||||||||||    
T  26860413 -----accaaatgagcttgctacaaaagttatattactttgctcctgaaagagataaaaattgttgttcccattaaaaaaaatgttatgacaaacctgca 26860319  T
Q  517 aaataccattttacccacaactatagctaactactattcgatagccaactgcatttaagtgcagttgctgccggattgtggaaggttactactagactct 616  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  26860318 aaataccattttacccgcaactatagctaactactattcggtagccaactgcatttaagtgcagttgctgccagattgtggaaggttactactggactct 26860219  T
Q  617 gtcaatctaagagtcaagatcttctccattttgtactacct 657  Q
    ||||||||||||||||| ||| |||||||||||||||||||    
T  26860218 gtcaatctaagagtcaatatcctctccattttgtactacct 26860178  T

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