View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20739_low_4 (Length: 648)

Name: NF20739_low_4
Description: NF20739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20739_low_4
NF20739_low_4
[»] chr3 (9 HSPs)
chr3 (216-632)||(4271694-4272111)
chr3 (224-423)||(42346596-42346798)
chr3 (64-128)||(4271538-4271603)
chr3 (3-54)||(4271443-4271494)
chr3 (64-106)||(54540751-54540793)
chr3 (3-51)||(51038840-51038888)
chr3 (3-51)||(52839040-52839088)
chr3 (3-47)||(54539758-54539802)
chr3 (3-51)||(54540840-54540888)
[»] chr8 (8 HSPs)
chr8 (543-624)||(12185574-12185655)
chr8 (543-624)||(12430002-12430083)
chr8 (543-624)||(12174065-12174143)
chr8 (543-624)||(12418493-12418571)
chr8 (64-114)||(18979072-18979123)
chr8 (3-48)||(42982710-42982755)
chr8 (3-51)||(22221414-22221462)
chr8 (3-51)||(22227756-22227804)
[»] chr6 (4 HSPs)
chr6 (3-51)||(12382761-12382809)
chr6 (3-51)||(3721615-3721663)
chr6 (3-51)||(8822843-8822891)
chr6 (3-51)||(16704547-16704595)
[»] scaffold0045 (1 HSPs)
scaffold0045 (3-53)||(49132-49182)
[»] chr7 (2 HSPs)
chr7 (1-62)||(46483546-46483607)
chr7 (3-51)||(48934953-48935001)
[»] chr5 (5 HSPs)
chr5 (64-106)||(36486449-36486491)
chr5 (64-128)||(1797235-1797300)
chr5 (64-105)||(28538774-28538815)
chr5 (3-51)||(16650905-16650953)
chr5 (3-51)||(28538679-28538727)
[»] chr4 (4 HSPs)
chr4 (64-106)||(31600946-31600988)
chr4 (1-57)||(1289098-1289155)
chr4 (3-48)||(48781098-48781143)
chr4 (3-51)||(10470549-10470597)
[»] chr1 (4 HSPs)
chr1 (3-57)||(35594220-35594274)
chr1 (3-48)||(11436045-11436090)
chr1 (64-128)||(44411904-44411969)
chr1 (66-106)||(14999381-14999421)


Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 216 - 632
Target Start/End: Original strand, 4271694 - 4272111
Alignment:
Q  216 aagattgcgaggaagatttgaagggtctcacgaaaagtgaggttactgtgattgacacaagttgtcgagtgtggaaggttgataaatttgttttcagaaa 315  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4271694 aagattgcgaggaagatttgaagggtttcacgaaaagtgaggttactgtgattgacacaagttgtcgagtgtggaaggttgataaatttgttttcagaaa 4271793  T
Q  316 gaataattggaaaataagagagaggaaacaaaagaacaagtttgttgcgaagaagaagagtaaattgactcatgagcttgatattcatggaattggttcc 415  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4271794 gaatgattggaaaataagagagaggaaacaaaagaacaagtttgttgcgaagaagaagagtaaattgactcgtgagcttgatattcatggaattggttcc 4271893  T
Q  416 tccaagtatagnnnnnnnaactcgtaccattattgtacttaatcgagattcagaaaaagagacaatgggattaagctgaatctggattggatttgggttt 515  Q
    |||||||||||       |||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  4271894 tccaagtatagtttttttaactcgtaccattgctgtacttaatcgagattcaaaaaaagagacaatgggattaagctgaatctggattggatttgggttt 4271993  T
Q  516 aagctgaataattttctattgcaacttaacagttccaccaacaatgatttttcagcaaagtgtctatggaactctttccaatctgg-aagcagcagaagc 614  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  4271994 aagctgaatagttttctattgcagcttaacagttccaccaacaatgatttttcagcaaagtgtctatggaactctttccaatctggaaagcagtagaagc 4272093  T
Q  615 aaaagacttaggaggttg 632  Q
    ||||||||||||||||||    
T  4272094 aaaagacttaggaggttg 4272111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 224 - 423
Target Start/End: Original strand, 42346596 - 42346798
Alignment:
Q  224 gaggaagatttgaagggtctcacgaaaagtgaggttactgtgattgacacaagttgtcgagtgtggaaggttgataaatttgttttcagaaagaataat- 322  Q
    ||||||||||| |||||| ||||||||||||||||||||||||| ||||| ||||||| ||||||||| |||||||| ||||| ||||||| |||||||     
T  42346596 gaggaagatttcaagggtttcacgaaaagtgaggttactgtgatagacacgagttgtccagtgtggaaagttgataagtttgtgttcagaaggaataatg 42346695  T
Q  323 --tggaaaataagagagaggaaacaaaagaacaagtttgttgcgaagaagaagagtaaattgactcatgagcttgatattcatggaattggttcctccaa 420  Q
      |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||| |||||||||||||| ||||||||    
T  42346696 tttggaaaatcagagagaggaaacaaaagaacaagtttgtagcgaagaagaagagtaaatcgacccatgagcttgacattcatggaattgggtcctccaa 42346795  T
Q  421 gta 423  Q
    |||    
T  42346796 gta 42346798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 128
Target Start/End: Original strand, 4271538 - 4271603
Alignment:
Q  64 tttgcaactttgattctttttgttaattttgacaggtcaatg-ctacatgacacgccacatgtgta 128  Q
    |||||||||||||| |||||||| ||||||||| |||||||| ||| |||||||||||||||||||    
T  4271538 tttgcaactttgatcctttttgtcaattttgaccggtcaatgtctatatgacacgccacatgtgta 4271603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 4271443 - 4271494
Alignment:
Q  3 taaattgcacttttccacctttaactttcaaaaatttgtaattttgacctct 54  Q
    ||||||| ||||||| | ||||||||||||||||||||||||||||| ||||    
T  4271443 taaattgtacttttctatctttaactttcaaaaatttgtaattttgatctct 4271494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 64 - 106
Target Start/End: Complemental strand, 54540793 - 54540751
Alignment:
Q  64 tttgcaactttgattctttttgttaattttgacaggtcaatgc 106  Q
    |||||||||||||| |||||||| ||||||||| |||||||||    
T  54540793 tttgcaactttgatcctttttgtcaattttgaccggtcaatgc 54540751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 51038888 - 51038840
Alignment:
Q  3 taaattgcacttttccacctttaactttcaaaaatttgtaattttgacc 51  Q
    |||| |||||||||||||| |||||||| ||||| ||| ||||||||||    
T  51038888 taaagtgcacttttccacccttaacttttaaaaagttgcaattttgacc 51038840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 52839040 - 52839088
Alignment:
Q  3 taaattgcacttttccacctttaactttcaaaaatttgtaattttgacc 51  Q
    |||| |||| |||||| ||| |||||| |||||||||||||||||||||    
T  52839040 taaagtgcaattttccccctctaacttccaaaaatttgtaattttgacc 52839088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 54539758 - 54539802
Alignment:
Q  3 taaattgcacttttccacctttaactttcaaaaatttgtaatttt 47  Q
    |||| |||||||||||||| |||||||||||||| ||| ||||||    
T  54539758 taaagtgcacttttccacccttaactttcaaaaacttgcaatttt 54539802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 54540888 - 54540840
Alignment:
Q  3 taaattgcacttttccacctttaactttcaaaaatttgtaattttgacc 51  Q
    |||| ||||||||||| || |||||||||||||| ||| ||||||||||    
T  54540888 taaagtgcacttttccccccttaactttcaaaaacttgcaattttgacc 54540840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 5e-24; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 543 - 624
Target Start/End: Complemental strand, 12185655 - 12185574
Alignment:
Q  543 aacagttccaccaacaatgatttttcagcaaagtgtctatggaactctttccaatctggaagcagcagaagcaaaagactta 624  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||| |||||||| || ||||||||    
T  12185655 aacagttccaccagcaatgaattttcagcaaagtgtctatggaactcttcccaatctggaaacagcagaaacagaagactta 12185574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 543 - 624
Target Start/End: Complemental strand, 12430083 - 12430002
Alignment:
Q  543 aacagttccaccaacaatgatttttcagcaaagtgtctatggaactctttccaatctggaagcagcagaagcaaaagactta 624  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||| |||||||| || ||||||||    
T  12430083 aacagttccaccagcaatgaattttcagcaaagtgtctatggaactcttcccaatctggaaacagcagaaacagaagactta 12430002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 543 - 624
Target Start/End: Complemental strand, 12174143 - 12174065
Alignment:
Q  543 aacagttccaccaacaatgatttttcagcaaagtgtctatggaactctttccaatctggaagcagcagaagcaaaagactta 624  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||   ||||||||||||||| |||| |||||||||||    
T  12174143 aacagttccaccagcaatgaattttcagcaaagtgtctatggaactc---ccaatctggaagcagtagaaacaaaagactta 12174065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 543 - 624
Target Start/End: Complemental strand, 12418571 - 12418493
Alignment:
Q  543 aacagttccaccaacaatgatttttcagcaaagtgtctatggaactctttccaatctggaagcagcagaagcaaaagactta 624  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||   ||||||||||||||| |||| |||||||||||    
T  12418571 aacagttccaccagcaatgaattttcagcaaagtgtctatggaactc---ccaatctggaagcagtagaaacaaaagactta 12418493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 114
Target Start/End: Complemental strand, 18979123 - 18979072
Alignment:
Q  64 tttgcaactttgattctttttgttaattttgacaggtcaatg-ctacatgac 114  Q
    |||||||||||||| |||||||  |||||||||||||||||| |||||||||    
T  18979123 tttgcaactttgatcctttttgccaattttgacaggtcaatgcctacatgac 18979072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 42982755 - 42982710
Alignment:
Q  3 taaattgcacttttccacctttaactttcaaaaatttgtaattttg 48  Q
    |||| ||||||||||||||||||| ||| ||||| |||||||||||    
T  42982755 taaagtgcacttttccacctttaagttttaaaaagttgtaattttg 42982710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 22221462 - 22221414
Alignment:
Q  3 taaattgcacttttccacctttaactttcaaaaatttgtaattttgacc 51  Q
    |||| ||||||||||||||  ||||||||||||| ||| ||||||||||    
T  22221462 taaagtgcacttttccacccctaactttcaaaaacttgcaattttgacc 22221414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 22227804 - 22227756
Alignment:
Q  3 taaattgcacttttccacctttaactttcaaaaatttgtaattttgacc 51  Q
    |||| ||||||||||||||  ||||||||||||| ||| ||||||||||    
T  22227804 taaagtgcacttttccacccctaactttcaaaaacttgcaattttgacc 22227756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 12382809 - 12382761
Alignment:
Q  3 taaattgcacttttccacctttaactttcaaaaatttgtaattttgacc 51  Q
    |||| ||||||||||||||| ||| ||| ||||||||||||||||||||    
T  12382809 taaagtgcacttttccacctctaatttttaaaaatttgtaattttgacc 12382761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 3721615 - 3721663
Alignment:
Q  3 taaattgcacttttccacctttaactttcaaaaatttgtaattttgacc 51  Q
    |||| ||||||||||| ||| ||||||||||||| ||| ||||||||||    
T  3721615 taaagtgcacttttccccctctaactttcaaaaacttgcaattttgacc 3721663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 8822891 - 8822843
Alignment:
Q  3 taaattgcacttttccacctttaactttcaaaaatttgtaattttgacc 51  Q
    |||| |||||||||||  |||||||||||||||| ||| ||||||||||    
T  8822891 taaagtgcacttttccctctttaactttcaaaaacttgcaattttgacc 8822843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 16704595 - 16704547
Alignment:
Q  3 taaattgcacttttccacctttaactttcaaaaatttgtaattttgacc 51  Q
    |||| ||||||||||| || |||||||||||||| ||| ||||||||||    
T  16704595 taaagtgcacttttcctcccttaactttcaaaaacttgcaattttgacc 16704547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 49182 - 49132
Alignment:
Q  3 taaattgcacttttccacctttaactttcaaaaatttgtaattttgacctc 53  Q
    ||||||||||||||||||| |||||||| ||||| ||| ||||||| ||||    
T  49182 taaattgcacttttccacccttaacttttaaaaacttgcaattttggcctc 49132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 46483607 - 46483546
Alignment:
Q  1 gttaaattgcacttttccacctttaactttcaaaaatttgtaattttga-cctctaagattta 62  Q
    |||||| ||||||||||| ||||||||||| ||||| |||||||||||| || ||||||||||    
T  46483607 gttaaagtgcacttttcc-cctttaacttttaaaaacttgtaattttgatcccctaagattta 46483546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 48935001 - 48934953
Alignment:
Q  3 taaattgcacttttccacctttaactttcaaaaatttgtaattttgacc 51  Q
    |||| |||| |||||||||  ||||||||||||| ||||||||||||||    
T  48935001 taaagtgcatttttccacccctaactttcaaaaacttgtaattttgacc 48934953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 64 - 106
Target Start/End: Complemental strand, 36486491 - 36486449
Alignment:
Q  64 tttgcaactttgattctttttgttaattttgacaggtcaatgc 106  Q
    |||||||||||||| |||||||| ||||||||| |||||||||    
T  36486491 tttgcaactttgatcctttttgtcaattttgaccggtcaatgc 36486449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 1797300 - 1797235
Alignment:
Q  64 tttgcaactttgattctttttgttaattttgacaggtcaatg-ctacatgacacgccacatgtgta 128  Q
    |||||||||||||||| |||| | ||||||||| |||||||| |||  || |||||||||||||||    
T  1797300 tttgcaactttgattccttttttcaattttgaccggtcaatgcctatgtggcacgccacatgtgta 1797235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 28538774 - 28538815
Alignment:
Q  64 tttgcaactttgattctttttgttaattttgacaggtcaatg 105  Q
    |||||||||||||| |||||||| ||||||||| ||||||||    
T  28538774 tttgcaactttgatcctttttgtcaattttgaccggtcaatg 28538815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 16650953 - 16650905
Alignment:
Q  3 taaattgcacttttccacctttaactttcaaaaatttgtaattttgacc 51  Q
    |||| |||||||||||||| |||||||| ||||| ||| ||||||||||    
T  16650953 taaagtgcacttttccacccttaacttttaaaaacttgcaattttgacc 16650905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 28538679 - 28538727
Alignment:
Q  3 taaattgcacttttccacctttaactttcaaaaatttgtaattttgacc 51  Q
    |||| ||||||||||||||  ||||||||||||| ||| ||||||||||    
T  28538679 taaagtgcacttttccacccgtaactttcaaaaacttgcaattttgacc 28538727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 64 - 106
Target Start/End: Complemental strand, 31600988 - 31600946
Alignment:
Q  64 tttgcaactttgattctttttgttaattttgacaggtcaatgc 106  Q
    |||||||||||||| |||||||| ||||||||| |||||||||    
T  31600988 tttgcaactttgatcctttttgtcaattttgaccggtcaatgc 31600946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 1289098 - 1289155
Alignment:
Q  1 gttaaattgcacttttccacctttaactttcaaaaatttgtaattttga-cctctaag 57  Q
    |||||| || |||||||| || |||||||||||| |||||||||||||| ||||||||    
T  1289098 gttaaagtgaacttttccccccttaactttcaaatatttgtaattttgatcctctaag 1289155  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 48781143 - 48781098
Alignment:
Q  3 taaattgcacttttccacctttaactttcaaaaatttgtaattttg 48  Q
    |||| ||||||||||| ||| ||||||||||||||||| |||||||    
T  48781143 taaagtgcacttttccccctctaactttcaaaaatttgcaattttg 48781098  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 10470549 - 10470597
Alignment:
Q  3 taaattgcacttttccacctttaactttcaaaaatttgtaattttgacc 51  Q
    |||| ||||||||||| || |||||||||||||| ||| ||||||||||    
T  10470549 taaagtgcacttttccccccttaactttcaaaaacttgcaattttgacc 10470597  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 35594220 - 35594274
Alignment:
Q  3 taaattgcacttttccacctttaactttcaaaaatttgtaattttgacctctaag 57  Q
    |||| ||||||||||||||  ||||||||||||| ||| |||||||||| |||||    
T  35594220 taaagtgcacttttccacccctaactttcaaaaacttgcaattttgacccctaag 35594274  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 11436045 - 11436090
Alignment:
Q  3 taaattgcacttttccacctttaactttcaaaaatttgtaattttg 48  Q
    |||| ||||||||||| ||||||||||||||||| ||| |||||||    
T  11436045 taaagtgcacttttccccctttaactttcaaaaacttgcaattttg 11436090  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 44411969 - 44411904
Alignment:
Q  64 tttgcaactttgattctttttgttaattttgacaggtcaatg-ctacatgacacgccacatgtgta 128  Q
    |||||||||||||| |||||||  ||||||||| |||||||| |||| || |||||||| ||||||    
T  44411969 tttgcaactttgatcctttttgccaattttgaccggtcaatgcctacgtggcacgccacgtgtgta 44411904  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 14999381 - 14999421
Alignment:
Q  66 tgcaactttgattctttttgttaattttgacaggtcaatgc 106  Q
    |||||||||||| |||||||| ||||||||| |||||||||    
T  14999381 tgcaactttgatcctttttgtcaattttgaccggtcaatgc 14999421  T

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