View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2073_high_10 (Length: 356)

Name: NF2073_high_10
Description: NF2073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2073_high_10
NF2073_high_10
[»] chr2 (3 HSPs)
chr2 (15-149)||(27763778-27763913)
chr2 (243-295)||(27763629-27763682)
chr2 (37-84)||(19384322-19384369)
[»] chr5 (2 HSPs)
chr5 (15-149)||(43549627-43549762)
chr5 (243-294)||(43549481-43549532)
[»] chr4 (2 HSPs)
chr4 (15-149)||(5473389-5473526)
chr4 (243-295)||(5473630-5473682)
[»] chr7 (2 HSPs)
chr7 (15-102)||(21269230-21269317)
chr7 (243-295)||(21269465-21269517)
[»] chr1 (3 HSPs)
chr1 (15-92)||(49936746-49936823)
chr1 (243-295)||(49937169-49937221)
chr1 (115-149)||(49937036-49937070)


Alignment Details
Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 15 - 149
Target Start/End: Complemental strand, 27763913 - 27763778
Alignment:
Q  15 gtcaacacccaccgtttcaattaatttgctgcaccatttgtttaattaagaattcattttattagtgttaagattaattccctcaaac-nnnnnnnntca 113  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||         |||    
T  27763913 gtcaacacccaccgtttcaattaatttgctgcaccgtttgtttaattaagaattcattttattagtgttaagattaattccctcaaacaaaaaaaaatca 27763814  T
Q  114 gtgttaagattaaagagtgctaacctttcacgaccc 149  Q
    ||||||||||||||||||||||||||||||||||||    
T  27763813 gtgttaagattaaagagtgctaacctttcacgaccc 27763778  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 243 - 295
Target Start/End: Complemental strand, 27763682 - 27763629
Alignment:
Q  243 aaggcatccgtgaattttcgttaccatagttccgtaccg-tttagcatttttct 295  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  27763682 aaggcatccgtgaattttcgttaccatagttccgtaccgttttagcatttttct 27763629  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 37 - 84
Target Start/End: Original strand, 19384322 - 19384369
Alignment:
Q  37 aatttgctgcaccatttgtttaattaagaattcattttattagtgtta 84  Q
    |||||| |||||| |||||||||||| |||||||||||| ||||||||    
T  19384322 aatttgatgcaccgtttgtttaattatgaattcattttaatagtgtta 19384369  T

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Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 15 - 149
Target Start/End: Complemental strand, 43549762 - 43549627
Alignment:
Q  15 gtcaacacccaccgtttcaattaatttgctgcaccatttgtttaattaagaattcattttattagtgttaagattaattccctcaaac-nnnnnnnntca 113  Q
    ||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||         |||    
T  43549762 gtcaacatccaccgtttcaattaatttgctccaccgtttgtttaattaagaattcattttattagtgttaagattaattccctcaaacaaaaaaaaatca 43549663  T
Q  114 gtgttaagattaaagagtgctaacctttcacgaccc 149  Q
    ||||||||||||||||||||||||||||||||||||    
T  43549662 gtgttaagattaaagagtgctaacctttcacgaccc 43549627  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 243 - 294
Target Start/End: Complemental strand, 43549532 - 43549481
Alignment:
Q  243 aaggcatccgtgaattttcgttaccatagttccgtaccgtttagcatttttc 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43549532 aaggcatccgtgaattttcgttaccatagttccgtaccgtttagcatttttc 43549481  T

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Target: chr4 (Bit Score: 84; Significance: 7e-40; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 15 - 149
Target Start/End: Original strand, 5473389 - 5473526
Alignment:
Q  15 gtcaacacccaccgtttcaattaatttgctgcaccatttgtttaattaagaattcattttattagtgttaagattaattccctcaaac---nnnnnnnnt 111  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||           |    
T  5473389 gtcaacacccaccgtttcaattaatttgctgcaccgtttgattaattaagaattcattttattagtgataagattaattccctcaaacaaaaataaaaat 5473488  T
Q  112 cagtgttaagattaaagagtgctaacctttcacgaccc 149  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  5473489 cagtgttaagattaaagagtgctaacctttcacaaccc 5473526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 243 - 295
Target Start/End: Original strand, 5473630 - 5473682
Alignment:
Q  243 aaggcatccgtgaattttcgttaccatagttccgtaccgtttagcatttttct 295  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5473630 aaggcatccgtgaattttcgttaccatggttccgtaccgtttagcatttttct 5473682  T

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Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 21269230 - 21269317
Alignment:
Q  15 gtcaacacccaccgtttcaattaatttgctgcaccatttgtttaattaagaattcattttattagtgttaagattaattccctcaaac 102  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  21269230 gtcaacacccaccgtttcaattaatttgctgcaccgtttgtttaattaagaattcattttattattgttaagattaattccctcaaac 21269317  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 243 - 295
Target Start/End: Original strand, 21269465 - 21269517
Alignment:
Q  243 aaggcatccgtgaattttcgttaccatagttccgtaccgtttagcatttttct 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21269465 aaggcatccgtgaattttcgttaccatagttccgtaccgtttagcatttttct 21269517  T

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Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 15 - 92
Target Start/End: Original strand, 49936746 - 49936823
Alignment:
Q  15 gtcaacacccaccgtttcaattaatttgctgcaccatttgtttaattaagaattcattttattagtgttaagattaat 92  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  49936746 gtcaacacccacagtttcaattaatttgctgcaccgtttgtttaattaagaattcattttattagtgttaagattaat 49936823  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 243 - 295
Target Start/End: Original strand, 49937169 - 49937221
Alignment:
Q  243 aaggcatccgtgaattttcgttaccatagttccgtaccgtttagcatttttct 295  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  49937169 aaggcatcagtgaattttcgttaccatagttccgtaccgtttagcatttttct 49937221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 149
Target Start/End: Original strand, 49937036 - 49937070
Alignment:
Q  115 tgttaagattaaagagtgctaacctttcacgaccc 149  Q
    |||||||||||||||||||||||||||||||||||    
T  49937036 tgttaagattaaagagtgctaacctttcacgaccc 49937070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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