View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2073_high_3 (Length: 495)
Name: NF2073_high_3
Description: NF2073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2073_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 13 - 478
Target Start/End: Complemental strand, 17983688 - 17983223
Alignment:
| Q |
13 |
attcttatgatgactgaagaaaaaataaacttaagcaaaaagagaagttaagataaagttttattattaatcaatatttattctcataatttttaacata |
112 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
17983688 |
attcttatgatgactgaagaaaaaaaaaacttaagcaaaaagagaagttaagataaagttttattattaatcaatatttattctcataatttttaacaga |
17983589 |
T |
|
| Q |
113 |
acaaagaatttcaggactgtcccttatcatcctcgtcgtccttttcctctttgccatcatcaacctcctcagcttcatctatatcttcatctttataatg |
212 |
Q |
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|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17983588 |
acaaagaatttcaggactgtcccttatcatagtcgtcatccttttcctctttgccatcatcaacctcctcagcttcatctatatcttcatctttataatg |
17983489 |
T |
|
| Q |
213 |
ataataatcatgaccatcaaaggtaaaaacgttatttggatccaccaattctcgataatcagaatgcatttcttcaatgtcgtaaattccgtttggaatt |
312 |
Q |
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|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
17983488 |
ataataatcacgaccatcaaaggtaaaaatattatttggatccaccaattctcgataatcagcatgcatttcttcaatgtcgtaaattccgtttggaatt |
17983389 |
T |
|
| Q |
313 |
aatctcnnnnnnngtgaaagatttgagattaacctactatcattgttgtcgtcgtcatcatcgccatcatctggctcatcgatgtccccgtcatcctcat |
412 |
Q |
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|||||| || ||| ||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| | |
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| T |
17983388 |
aatctctttttttgtaaaatatttgtgattaacctacgatcattgtcgtcgtcgtcatcatcgccatcatctggctcattgatgtccccgtcatcctcgt |
17983289 |
T |
|
| Q |
413 |
actcgtcatggctgtcgttatcatcatcagtgttgccatcaccagcgttgtcttcaacataaacaa |
478 |
Q |
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| T |
17983288 |
actcgtcatggctgtcgttgtcatcatcagtgttgccatcaccagcgttgtcttcaacataaacaa |
17983223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 24 - 478
Target Start/End: Complemental strand, 17976044 - 17975583
Alignment:
| Q |
24 |
gactgaagaaaaaataaacttaagcaaaaagagaagttaagataaagttttatta---ttaatcaatatttattctcataatttttaacataaca----- |
115 |
Q |
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|||||||||||||| || |||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
17976044 |
gactgaagaaaaaacaatctta-gcaaaaagagaagttgagataaagttttattaatattaatcaatatttattctcataatttttaacataacataaca |
17975946 |
T |
|
| Q |
116 |
aagaatttcaggactgtcccttatcatcctcgtcgtccttttcctctttgccatcatcaacctcctcagcttcatctatatcttcatctttataatgata |
215 |
Q |
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|||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||| | |||||| |
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| T |
17975945 |
aagaatttcaggactgtcccttatcatcgtcgtcgtctgtttcttctttgccatcatcaacctcctcagcttcatctatagcttcatcttgaacatgata |
17975846 |
T |
|
| Q |
216 |
ataatcatgaccatcaaaggtaaaaacgttatttggatccaccaattctcgataatcagaatgcatttcttcaatgtcgtaaattccgtttggaattaat |
315 |
Q |
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|||||| |||||||||||||||||| || |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
17975845 |
gtaatcacgaccatcaaaggtaaaaatgtcgtttgaatccaccaattctcgataatcagcatgcatttcttcaatgtcgtaaattccgtttggaattaat |
17975746 |
T |
|
| Q |
316 |
ctcnnnnnnngtgaaagatttgagattaacctactatcattgttgtcgtcgtcatcatcgccatcatctggctcatcgatgtccccgtcatcctcatact |
415 |
Q |
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||| || ||| |||||||||||| ||| |||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||| |||| |
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| T |
17975745 |
ctctttttttgtaaaatatttgagattaatttacaatcattgtcgtcgtcgtcatcatcgccatcatctaactcattgatgtccccgtcatcctcgtact |
17975646 |
T |
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| Q |
416 |
cgtcatggctgtcgttatcatcatcagtgttgccatcaccagcgttgtcttcaacataaacaa |
478 |
Q |
| |
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|| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
17975645 |
cgacatggctgtcgttgtcatcatcagtgttgccatcaccagcgtagtcttcaacataaacaa |
17975583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 17987013 - 17986787
Alignment:
| Q |
18 |
tatgatgactgaag---aaaaaataaacttaagcaaaaagagaagttaagataaagttttattattaatcaatatttattctcataatttttaacataac |
114 |
Q |
| |
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|||||||||||||| |||||| ||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
17987013 |
tatgatgactgaaggaaaaaaaaaaaactta-gcaaaaagagaagttgagataaagttt-attattaatcaatatttattctcataattttttacataac |
17986916 |
T |
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| Q |
115 |
aaagaatttcaggactgtcccttatcatcc---tcgtcgtccttttcctctttgccatcatcaacctcctcagcttcatc-----tat-atcttcatctt |
205 |
Q |
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|||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| ||| ||||||||||| |
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| T |
17986915 |
aaagaatttcaggactgttccttatcatcctcttcgtcgtccttctcctctttgccatcatcaacctcttcagcttcatcataagtatcatcttcatctt |
17986816 |
T |
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| Q |
206 |
tataatgataataatcatgaccatcaaag |
234 |
Q |
| |
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| T |
17986815 |
taacatgataataatcatgaccatcaaag |
17986787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 282
Target Start/End: Complemental strand, 13148547 - 13148475
Alignment:
| Q |
210 |
atgataataatcatgaccatcaaaggtaaaaacgttatttggatccaccaattctcgataatcagaatgcatt |
282 |
Q |
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|||||||||||||||| ||||| | |||||| ||| || || |||||| |||| |||||||||| ||||||| |
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| T |
13148547 |
atgataataatcatgatcatcatggctaaaaatgttgttagggtccacccattcacgataatcagcatgcatt |
13148475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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