View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2073_high_4 (Length: 482)

Name: NF2073_high_4
Description: NF2073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2073_high_4
NF2073_high_4
[»] chr1 (4 HSPs)
chr1 (7-467)||(6959877-6960337)
chr1 (214-254)||(40685193-40685233)
chr1 (274-365)||(622841-622935)
chr1 (271-346)||(14210674-14210752)
[»] chr4 (7 HSPs)
chr4 (270-367)||(36139004-36139104)
chr4 (270-346)||(30211974-30212053)
chr4 (273-373)||(42096769-42096872)
chr4 (305-367)||(30863267-30863329)
chr4 (217-254)||(24393615-24393652)
chr4 (210-254)||(52450198-52450242)
chr4 (214-254)||(55301332-55301372)
[»] chr6 (6 HSPs)
chr6 (299-371)||(7477023-7477095)
chr6 (299-371)||(7477389-7477461)
chr6 (299-371)||(7477755-7477827)
chr6 (208-247)||(28992358-28992397)
chr6 (274-367)||(2904754-2904850)
chr6 (303-373)||(6566808-6566878)
[»] chr2 (2 HSPs)
chr2 (214-254)||(32016504-32016544)
chr2 (210-246)||(33833483-33833519)
[»] chr8 (5 HSPs)
chr8 (299-346)||(157497-157544)
chr8 (208-237)||(12750152-12750181)
chr8 (300-372)||(12750259-12750331)
chr8 (210-254)||(22842147-22842191)
chr8 (299-367)||(36626922-36626990)
[»] chr5 (3 HSPs)
chr5 (210-244)||(8254697-8254731)
chr5 (212-254)||(42923986-42924028)
chr5 (209-253)||(9828178-9828222)
[»] scaffold0004 (1 HSPs)
scaffold0004 (299-367)||(130670-130738)


Alignment Details
Target: chr1 (Bit Score: 416; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 7 - 467
Target Start/End: Complemental strand, 6960337 - 6959877
Alignment:
Q  7 ggagcagagagcgaggagtgtgagacgagctgggactgatgagaatggcatggtaatggtgattcgatgatggtggaagtgtggcggtggaaaacgccgt 106  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6960337 ggagaagagagcgaggagtgtgagacgagctgggactgatgagaatggcatggtaatggtgattcgatgatggtggaagtgtggcggtggaaaacgccgt 6960238  T
Q  107 gggagggaaaatgaagacgaagagggagtgctgtttagtgggctttaggttttgaagttagaagcccggttgttttgttaaggcctggtgggctttagca 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6960237 gggagggaaaatgaagacgaagagggagtgctgtttagtgggctttaggttttgaagttagaagcccggttgttttgttaaggcctggtgggctttagca 6960138  T
Q  207 gtcgataattgctcttctcccatctgtttttactcgttcccatcaaaacagggttaactcacggtgcattttcaacgtgtgttaacttacgt---tgtat 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||   |||||    
T  6960137 gtcgataattgctcttctcccatctgtttttactcgttcccatcaaaacagggttaactcacggtacattttcaacgtgagttaacttacgtaggtgtat 6960038  T
Q  304 ttttcagtgtgagttaacttacgtttgatggggatgagcaaaagcatatgggagaaaagcaattttcttagcagtctgcctgtatcgcttgaattagacg 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6960037 ttttcagtgtgagttaacttacgtttgatggggatgagcaaaagcatatgggagaaaagcaattttcttagcagtctgcctgtatcgcttgaattagacg 6959938  T
Q  404 ctgctccatgtgtcgtctcttggattactcaaccccttagataagttgatgtgaagttataatt 467  Q
    ||||||||||   ||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  6959937 ctgctccatg---cgtctctcggattactcaaccccttagataagttgatgtgaagttacaatt 6959877  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 214 - 254
Target Start/End: Complemental strand, 40685233 - 40685193
Alignment:
Q  214 attgctcttctcccatctgtttttactcgttcccatcaaaa 254  Q
    |||| ||||||||||||||||||||||||||||||| ||||    
T  40685233 attgttcttctcccatctgtttttactcgttcccataaaaa 40685193  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 365
Target Start/End: Complemental strand, 622935 - 622841
Alignment:
Q  274 attttcaacgtgtgttaacttacgt---tgtatttttcagtgtgagttaacttacgtttgatggggatgagcaaaagcatatgggagaaaagcaa 365  Q
    ||||||| |||| ||||||| ||||   |||||||||||  ||||||||||| ||||  || ||| |||||||||| || ||||||||| |||||    
T  622935 attttcagcgtgagttaactcacgtaggtgtatttttcaacgtgagttaactcacgtaggacgggaatgagcaaaaacaaatgggagaagagcaa 622841  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 271 - 346
Target Start/End: Original strand, 14210674 - 14210752
Alignment:
Q  271 tgcattttcaacgtgtgttaacttacgt---tgtatttttcagtgtgagttaacttacgtttgatggggatgagcaaaa 346  Q
    ||||||||||||||| ||||||| || |   |||||||||||| |||||||| || ||||  |||||| ||||||||||    
T  14210674 tgcattttcaacgtgagttaactcacataggtgtatttttcagcgtgagttatctcacgtaagatgggaatgagcaaaa 14210752  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 270 - 367
Target Start/End: Original strand, 36139004 - 36139104
Alignment:
Q  270 gtgcattttcaacgtgtgttaacttacgt---tgtatttttcagtgtgagttaacttacgtttgatggggatgagcaaaagcatatgggagaaaagcaat 366  Q
    |||||||||||||||| ||||||| | ||   || ||||||||| ||||||||||| | ||| |||| | |||||||||| |||||||||||| ||||||    
T  36139004 gtgcattttcaacgtgagttaactcatgtatgtgaatttttcagcgtgagttaactcatgttggatgagaatgagcaaaaacatatgggagaagagcaat 36139103  T
Q  367 t 367  Q
    |    
T  36139104 t 36139104  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 270 - 346
Target Start/End: Original strand, 30211974 - 30212053
Alignment:
Q  270 gtgcattttcaacgtgtgttaacttacgt---tgtatttttcagtgtgagttaacttacgtttgatggggatgagcaaaa 346  Q
    |||||||||||||||| ||||||| ||||   || ||||| ||||||||||||||| ||||| |||||| ||||| ||||    
T  30211974 gtgcattttcaacgtgagttaactcacgtaggtgcattttccagtgtgagttaactcacgttggatgggaatgagaaaaa 30212053  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 273 - 373
Target Start/End: Original strand, 42096769 - 42096872
Alignment:
Q  273 cattttcaacgtgtgttaacttacgt---tgtatttttcagtgtgagttaacttacgtttgatggggatgagcaaaagcatatgggagaaaagcaatttt 369  Q
    ||||||||||||| ||||||| || |   || ||||||||| ||||||||||| ||||| ||| || ||||||||||  | ||||||||| ||||||| |    
T  42096769 cattttcaacgtgagttaactcacataggtgcatttttcagcgtgagttaactcacgttggataggaatgagcaaaaatagatgggagaagagcaattct 42096868  T
Q  370 ctta 373  Q
    ||||    
T  42096869 ctta 42096872  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 367
Target Start/End: Complemental strand, 30863329 - 30863267
Alignment:
Q  305 tttcagtgtgagttaacttacgtttgatggggatgagcaaaagcatatgggagaaaagcaatt 367  Q
    |||||||||||||||||||||||| ||  || |||||||||| || |||| |||| |||||||    
T  30863329 tttcagtgtgagttaacttacgttggacaggaatgagcaaaaacaaatggaagaagagcaatt 30863267  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 254
Target Start/End: Original strand, 24393615 - 24393652
Alignment:
Q  217 gctcttctcccatctgtttttactcgttcccatcaaaa 254  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  24393615 gctcttctcccatctgtttttgctcattcccatcaaaa 24393652  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 254
Target Start/End: Complemental strand, 52450242 - 52450198
Alignment:
Q  210 gataattgctcttctcccatctgtttttactcgttcccatcaaaa 254  Q
    |||||||||| | ||||||||||||||||||| ||||| ||||||    
T  52450242 gataattgctttcctcccatctgtttttactcattcccgtcaaaa 52450198  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 55301332 - 55301372
Alignment:
Q  214 attgctcttctcccatctgtttttactcgttcccatcaaaa 254  Q
    |||||||||||||||| ||||||| ||||||||| ||||||    
T  55301332 attgctcttctcccatatgtttttgctcgttcccgtcaaaa 55301372  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 299 - 371
Target Start/End: Complemental strand, 7477095 - 7477023
Alignment:
Q  299 tgtatttttcagtgtgagttaacttacgtttgatggggatgagcaaaagcatatgggagaaaagcaattttct 371  Q
    |||||||||||||||| ||||||| ||||| |||||| ||||| |||| || ||||||||| |||||| ||||    
T  7477095 tgtatttttcagtgtgtgttaactcacgttggatgggaatgagtaaaaccaaatgggagaagagcaatattct 7477023  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 299 - 371
Target Start/End: Complemental strand, 7477461 - 7477389
Alignment:
Q  299 tgtatttttcagtgtgagttaacttacgtttgatggggatgagcaaaagcatatgggagaaaagcaattttct 371  Q
    |||||||||||||||| ||||||| ||||| |||||| ||||| |||| || ||||||||| |||||| ||||    
T  7477461 tgtatttttcagtgtgtgttaactcacgttggatgggaatgagtaaaaccaaatgggagaagagcaatattct 7477389  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 299 - 371
Target Start/End: Complemental strand, 7477827 - 7477755
Alignment:
Q  299 tgtatttttcagtgtgagttaacttacgtttgatggggatgagcaaaagcatatgggagaaaagcaattttct 371  Q
    |||||||||||||||| ||||||| ||||| |||||| ||||| |||| || ||||||||| |||||| ||||    
T  7477827 tgtatttttcagtgtgtgttaactcacgttggatgggaatgagtaaaaccaaatgggagaagagcaatattct 7477755  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 208 - 247
Target Start/End: Original strand, 28992358 - 28992397
Alignment:
Q  208 tcgataattgctcttctcccatctgtttttactcgttccc 247  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  28992358 tcgataattgctcttctcccatctgtttttactcattccc 28992397  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 367
Target Start/End: Original strand, 2904754 - 2904850
Alignment:
Q  274 attttcaacgtgtgttaacttacgt---tgtatttttcagtgtgagttaacttacgtttgatggggatgagcaaaagcatatgggagaaaagcaatt 367  Q
    |||||||||||| ||||||| ||||   |||||||||| | ||||||||||| ||||| || | | |||||||||| || ||| ||||| |||||||    
T  2904754 attttcaacgtgagttaactcacgtaggtgtatttttctgcgtgagttaactcacgttggaagagaatgagcaaaatcaaatgagagaagagcaatt 2904850  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 373
Target Start/End: Complemental strand, 6566878 - 6566808
Alignment:
Q  303 tttttcagtgtgagttaacttacgtttgatggggatgagcaaaagcatatgggagaaaagcaattttctta 373  Q
    ||||| |||||||||||||| ||||| || ||| |||||||||  ||||| |||||| || ||||||||||    
T  6566878 ttttttagtgtgagttaactcacgttggacgggaatgagcaaacacatataggagaagaggaattttctta 6566808  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 214 - 254
Target Start/End: Complemental strand, 32016544 - 32016504
Alignment:
Q  214 attgctcttctcccatctgtttttactcgttcccatcaaaa 254  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  32016544 attgctcttctcccatctatttttactcgttcccatcaaaa 32016504  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 210 - 246
Target Start/End: Complemental strand, 33833519 - 33833483
Alignment:
Q  210 gataattgctcttctcccatctgtttttactcgttcc 246  Q
    |||||||||||||||||||||||||||||||| ||||    
T  33833519 gataattgctcttctcccatctgtttttactcattcc 33833483  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 346
Target Start/End: Complemental strand, 157544 - 157497
Alignment:
Q  299 tgtatttttcagtgtgagttaacttacgtttgatggggatgagcaaaa 346  Q
    |||||||||||| ||||||||||| ||||| |||||| ||||||||||    
T  157544 tgtatttttcagcgtgagttaactcacgttagatgggaatgagcaaaa 157497  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 237
Target Start/End: Original strand, 12750152 - 12750181
Alignment:
Q  208 tcgataattgctcttctcccatctgttttt 237  Q
    ||||||||||||||||||||||||||||||    
T  12750152 tcgataattgctcttctcccatctgttttt 12750181  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 372
Target Start/End: Original strand, 12750259 - 12750331
Alignment:
Q  300 gtatttttcagtgtgagttaacttacgtttgatggggatgagcaaaagcatatgggagaaaagcaattttctt 372  Q
    |||||||||||  |||||||||| ||||  | |||| |||||||||| || ||||||||| ||||||| ||||    
T  12750259 gtatttttcagcttgagttaactcacgtagggtgggaatgagcaaaaacagatgggagaagagcaattctctt 12750331  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 254
Target Start/End: Original strand, 22842147 - 22842191
Alignment:
Q  210 gataattgctcttctcccatctgtttttactcgttcccatcaaaa 254  Q
    |||||||| ||||||||||||||||||| ||| ||||| ||||||    
T  22842147 gataattgttcttctcccatctgttttttctcattcccgtcaaaa 22842191  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 299 - 367
Target Start/End: Complemental strand, 36626990 - 36626922
Alignment:
Q  299 tgtatttttcagtgtgagttaacttacgtttgatggggatgagcaaaagcatatgggagaaaagcaatt 367  Q
    ||||||||| | |||||||||||||||||  | | || |||||||||| ||||||| |||| |||||||    
T  36626990 tgtattttttactgtgagttaacttacgtacggtaggaatgagcaaaaacatatggaagaatagcaatt 36626922  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 244
Target Start/End: Original strand, 8254697 - 8254731
Alignment:
Q  210 gataattgctcttctcccatctgtttttactcgtt 244  Q
    |||||||||||||||||||| ||||||||||||||    
T  8254697 gataattgctcttctcccatatgtttttactcgtt 8254731  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 254
Target Start/End: Complemental strand, 42924028 - 42923986
Alignment:
Q  212 taattgctcttctcccatctgtttttactcgttcccatcaaaa 254  Q
    |||||||||||||| ||| ||||||||||||||||| ||||||    
T  42924028 taattgctcttctcacatatgtttttactcgttcccttcaaaa 42923986  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 9828178 - 9828222
Alignment:
Q  209 cgataattgctcttctcccatctgtttttactcgttcccatcaaa 253  Q
    |||||||||||||||||||||||| |||| ||| ||||| |||||    
T  9828178 cgataattgctcttctcccatctggttttgctcattcccgtcaaa 9828222  T

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Target: scaffold0004 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 299 - 367
Target Start/End: Complemental strand, 130738 - 130670
Alignment:
Q  299 tgtatttttcagtgtgagttaacttacgtttgatggggatgagcaaaagcatatgggagaaaagcaatt 367  Q
    |||||||||||||||||||||||| ||||  || ||  ||||| |||| |||| ||||||| |||||||    
T  130738 tgtatttttcagtgtgagttaactcacgtaagacggaaatgagtaaaaacatacgggagaagagcaatt 130670  T

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