View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2073_high_7 (Length: 437)
Name: NF2073_high_7
Description: NF2073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2073_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 9 - 421
Target Start/End: Complemental strand, 19062593 - 19062185
Alignment:
| Q |
9 |
aataatactacaaagaaaactgatttgttataacttataattaagctggcacactgatttgttagaattatgtaggccagaggagaagtttctttttgat |
108 |
Q |
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| T |
19062593 |
aataatactacaaagaacactgatttgttataact-ataattaagctggcacactgatttgttagaattatgtgggccagaggagaaggttctttttgat |
19062495 |
T |
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| Q |
109 |
aatacataagtaattgatgttttcaaattgtttgctctaattaaaatttgtaaaagcaaactttataatactattaaatttgtactttagtaaacttttc |
208 |
Q |
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| T |
19062494 |
aatacat--gtaattgatgttttcaaattgtttgctctaattaaaatttgtaaaagcaaactttataatactattaaatttatactttattaaacttttc |
19062397 |
T |
|
| Q |
209 |
cagcgattctagtaacctgatttattttaaagatgaatccactatcattttactatcaattgtcttttacatagattctttaaagtcacattttactaaa |
308 |
Q |
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| T |
19062396 |
cagcgattctagtaacctgatttattttaaagatgaatccactatcattttactatcaattgtcttttacattgattctttaaagtcacattttactaaa |
19062297 |
T |
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| Q |
309 |
atgtttgaagttcgaggatggatttgagatatataaaatnnnnnnntaaacgtgaggttaaggttgcaagagaataaaatttgaaaatttaaatctgaat |
408 |
Q |
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| T |
19062296 |
atgtttgaagttcgaggatggatttgagatata-aaataaaaaaaataaacgtgaggttaaggttgcaagagaataaaatttgaaaatttaaatctgaat |
19062198 |
T |
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| Q |
409 |
tttaagtgaaata |
421 |
Q |
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| T |
19062197 |
tttaagtgaaata |
19062185 |
T |
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