View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2073_low_11 (Length: 314)
Name: NF2073_low_11
Description: NF2073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2073_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 167; Significance: 2e-89; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 125 - 299
Target Start/End: Original strand, 11532108 - 11532282
Alignment:
| Q |
125 |
atcatccacgacatgtcgcaaatcaaggcgaacgagtatacatgatatcatccacgacatgttgcaaatcaaggccaacaaggtaatgtctcttaatata |
224 |
Q |
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| T |
11532108 |
atcatccacgacatattgcaaatcaaggcgaacgagtatacatgatatcatccacgacatgttgcaaatcaaggccaacaaggtaatgtctcttaatata |
11532207 |
T |
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| Q |
225 |
tacctgtattaaattaattttttcacaagttgtctgagattcactttttgttcgctattaattaatcatgtttgt |
299 |
Q |
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| T |
11532208 |
tacctgtattaaattaattttttcacaagttgtctgagattcactttttgttcgctattaattaatcatgtttgt |
11532282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 125 - 299
Target Start/End: Original strand, 11557599 - 11557773
Alignment:
| Q |
125 |
atcatccacgacatgtcgcaaatcaaggcgaacgagtatacatgatatcatccacgacatgttgcaaatcaaggccaacaaggtaatgtctcttaatata |
224 |
Q |
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|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11557599 |
atcatccacgacatattgcaaatcaaggcgaacgagtatacatgatatcatccacgacatgttgcaaatcaaggccaacaaggtaatgtctcttaatata |
11557698 |
T |
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| Q |
225 |
tacctgtattaaattaattttttcacaagttgtctgagattcactttttgttcgctattaattaatcatgtttgt |
299 |
Q |
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| T |
11557699 |
tacctgtattaaattaattttttcacaagttgtctgagattcactttttgttcgctattaattaatcatgtttgt |
11557773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 125 - 293
Target Start/End: Original strand, 11564422 - 11564590
Alignment:
| Q |
125 |
atcatccacgacatgtcgcaaatcaaggcgaacgagtatacatgatatcatccacgacatgttgcaaatcaaggccaacaaggtaatgtctcttaatata |
224 |
Q |
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| T |
11564422 |
atcatccacgacatgtcgcaaatcaaggcgaacgagtatacatgatatcatccatgacatgttgcaaatcaaggccaacaaggtaatgtctcttaatata |
11564521 |
T |
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| Q |
225 |
tacctgtattaaattaattttttcacaagttgtctgagattcactttttgttcgctattaattaatcat |
293 |
Q |
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|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11564522 |
tacccgtactaaattaattttttcacaagttgtctgagattcactttttgttcgctattaattaatcat |
11564590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 66 - 199
Target Start/End: Original strand, 11532003 - 11532136
Alignment:
| Q |
66 |
ttgcagtagcaataatggtgacctaaaacccaaataaagaaagaagataaagtgaagacatcatccacgacatgtcgcaaatcaaggcgaacgagtatac |
165 |
Q |
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| T |
11532003 |
ttgcagtagcaataatggtgacctaaaacccaaataaagaaagaagataaagtgaagacatcatccacgacatgtcgcaaatcaaggagaacgagtatac |
11532102 |
T |
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| Q |
166 |
atgatatcatccacgacatgttgcaaatcaaggc |
199 |
Q |
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| T |
11532103 |
atgatatcatccacgacatattgcaaatcaaggc |
11532136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 66 - 199
Target Start/End: Original strand, 11557494 - 11557627
Alignment:
| Q |
66 |
ttgcagtagcaataatggtgacctaaaacccaaataaagaaagaagataaagtgaagacatcatccacgacatgtcgcaaatcaaggcgaacgagtatac |
165 |
Q |
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| T |
11557494 |
ttgcagtagcaataatggtgacctaaaacccaaataaagaaagaagataaagtgaagacatcatccacgacatgtcgcaaatcaaggtgaacgagtatac |
11557593 |
T |
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| Q |
166 |
atgatatcatccacgacatgttgcaaatcaaggc |
199 |
Q |
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| T |
11557594 |
atgatatcatccacgacatattgcaaatcaaggc |
11557627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 11564404 - 11564450
Alignment:
| Q |
153 |
cgaacgagtatacatgatatcatccacgacatgttgcaaatcaaggc |
199 |
Q |
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| T |
11564404 |
cgaacgagtatacatgatatcatccacgacatgtcgcaaatcaaggc |
11564450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 11531950 - 11531983
Alignment:
| Q |
13 |
tcatcaagctgaactcaacatcatgaaggtattt |
46 |
Q |
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| T |
11531950 |
tcatcaagctgaactcaacatcatgaaggtattt |
11531983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 11557441 - 11557474
Alignment:
| Q |
13 |
tcatcaagctgaactcaacatcatgaaggtattt |
46 |
Q |
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| T |
11557441 |
tcatcaagccgaactcaacatcatgaaggtattt |
11557474 |
T |
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