View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2073_low_12 (Length: 304)
Name: NF2073_low_12
Description: NF2073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2073_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 281
Target Start/End: Complemental strand, 21489735 - 21489470
Alignment:
| Q |
16 |
attgttaatagaagacactcaaatttgttttctcatttcaatttttccaaatttatttagttccaatatatttaaagactacttcaccagtgatggaaac |
115 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
21489735 |
attgttaatagaagacactcaaatttgttttttcatttcaatttttcctaatttatttagtttcaatatatttaaagactacttcaccagtgatgcaaac |
21489636 |
T |
|
| Q |
116 |
tcacaaatttagtgataaaaagactatttgtttgaaatattttcgtttcggtgaacaaaagaaccaaaacaaagtgaaaattgtttcttaacttctaaaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
21489635 |
tcacaaatttagtgataaaaagactatttgtttgaaatattttcgtttcggtgaacaaaataaccaaaacaaagtaaaaattgtttcttaacttctaaaa |
21489536 |
T |
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| Q |
216 |
ttactcttatgcactcgaaaattactttaataccgagttcaaaagtttaaacagaaatttcgagcg |
281 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
21489535 |
ttactcttacgcactcgaaaattactttaataccgagttcaaaagtttaaagagaaatttcgagcg |
21489470 |
T |
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