View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2073_low_15 (Length: 258)
Name: NF2073_low_15
Description: NF2073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2073_low_15 |
 | |
|
| [»] scaffold0223 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 12 - 240
Target Start/End: Original strand, 16110244 - 16110472
Alignment:
| Q |
12 |
agagacaaaattagcaaaaaggcctgaaagaatttcgacccactaaggaaagaaataatggatccatcaaaattgcatctcaaatgtgatccttgtgata |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
16110244 |
agagacaaaattagcaaaaaggcctgaaagaatttcgacccactaaggaaagaaataaaggatccatcaaaagtgcatctcaaatgtgatccttgtgata |
16110343 |
T |
|
| Q |
112 |
aaagcatatggcatctagatgagctcaacatatgttatcaaatgactgaaaactttacagcttattacatcttgcaataacgtgtcaaaaatttctcaag |
211 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16110344 |
aaagcatatgacatctagatgagctcaacatatgttatcaaatgactgaaaactttacagcttattacatcttgcaataacgtgtcaaaaatttctcaag |
16110443 |
T |
|
| Q |
212 |
tttggttgtgtgcaaagaacgttatgcag |
240 |
Q |
| |
|
|||||||||| |||||||||||||||||| |
|
|
| T |
16110444 |
tttggttgtgcgcaaagaacgttatgcag |
16110472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0223 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0223
Description:
Target: scaffold0223; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 40 - 142
Target Start/End: Complemental strand, 27889 - 27788
Alignment:
| Q |
40 |
agaatttcgacccactaaggaaagaaataatggatccatcaaaattgcatctcaaatgtgatccttgtgataaaagcatatggcatctagatgagctcaa |
139 |
Q |
| |
|
|||||||||||||| |||| |||||||||| |||||||| |||| ||||| |||||||| ||| |||||||||||||||||| ||| || ||| |||||| |
|
|
| T |
27889 |
agaatttcgacccattaagaaaagaaataaaggatccatgaaaagtgcatatcaaatgtaatctttgtgataaaagcatatgacat-taaatgggctcaa |
27791 |
T |
|
| Q |
140 |
cat |
142 |
Q |
| |
|
||| |
|
|
| T |
27790 |
cat |
27788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 155
Target Start/End: Complemental strand, 8980133 - 8980019
Alignment:
| Q |
43 |
atttcgacccactaaggaaagaaataatggatccatcaaaattgcatctcaaatg--tgatccttgtgataaaagcatatggcatctagatgagctcaac |
140 |
Q |
| |
|
|||||||| || |||||||||||||| ||| ||||||| | ||||||||| ||||||||||||||||| |||||| |||| ||||||| |||| |
|
|
| T |
8980133 |
atttcgactcatcaaggaaagaaataaaagattcatcaaagtgttatctcaaataaatgatccttgtgataaaatcatatgacatcaagatgagatcaat |
8980034 |
T |
|
| Q |
141 |
atatgttatcaaatg |
155 |
Q |
| |
|
|| | |||||||||| |
|
|
| T |
8980033 |
atgtcttatcaaatg |
8980019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 155
Target Start/End: Original strand, 7581269 - 7581383
Alignment:
| Q |
43 |
atttcgacccactaaggaaagaaataatggatccatcaaaattgcatctcaaatg--tgatccttgtgataaaagcatatggcatctagatgagctcaac |
140 |
Q |
| |
|
|||||||| || |||||||||||||| ||| ||||||| | ||||||||| ||||||||||||||||| |||||| |||| ||||||| |||| |
|
|
| T |
7581269 |
atttcgactcatcaaggaaagaaataaaagattcatcaaagtgttatctcaaataaatgatccttgtgataaaatcatatgacatcaagatgagatcaat |
7581368 |
T |
|
| Q |
141 |
atatgttatcaaatg |
155 |
Q |
| |
|
|| | |||||||||| |
|
|
| T |
7581369 |
atgtcttatcaaatg |
7581383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University