View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2073_low_6 (Length: 446)
Name: NF2073_low_6
Description: NF2073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2073_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 15 - 253
Target Start/End: Original strand, 35762480 - 35762718
Alignment:
| Q |
15 |
tactataccttaaaacaaattaagagaaaaacagtttcataaaaacatgaagagtaatccatgcaacaactgaacaatgaataaaattgaagaaagagaa |
114 |
Q |
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| T |
35762480 |
tactataccttaaaacaaattaagagaaaaacagtttcataaaaacatgaagagtaatccatgcaacaactgaacaatgaataaaattgaagaaagagaa |
35762579 |
T |
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| Q |
115 |
aaaatggaactaacccaaaggtggctttcctttataggacgaggaggatttccagtgacccacttgatgatgattactgatcccttggttttttctccaa |
214 |
Q |
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| T |
35762580 |
aaaatggaactaacccaaaggtggctttcctttataggacgaggaggatttccagtgacccacttgatgatgattactgatcccttggttttttctccaa |
35762679 |
T |
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| Q |
215 |
ttatccatttcagtaatcaaaagaaatagacccagatga |
253 |
Q |
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| T |
35762680 |
ttatccatttcaataatcaaaagaaaaagacccagatga |
35762718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 121 - 260
Target Start/End: Original strand, 35800396 - 35800538
Alignment:
| Q |
121 |
gaactaacccaaaggtggctttcctttataggacga---ggaggatttccagtgacccacttgatgatgattactgatcccttggttttttctccaatta |
217 |
Q |
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| T |
35800396 |
gaacgaacctaaaggtggttttccgttataggatgaagaggaggatctccacagacccacttgatgatggttactgatcctttggtttcttctccaatta |
35800495 |
T |
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| Q |
218 |
tccatttcagtaatcaaaagaaatagacccagatgaggtaatt |
260 |
Q |
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| T |
35800496 |
tccatctccagaatcaaaagataaaaacccagaagagataatt |
35800538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 35787698 - 35787761
Alignment:
| Q |
190 |
actgatcccttggttttttctccaattatccatttcagtaatcaaaagaaatagacccagatga |
253 |
Q |
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| T |
35787698 |
actgatcccttggttttttgtccaattagccatttccagaatcaaaagagaaagacccagatga |
35787761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 122 - 197
Target Start/End: Original strand, 35767874 - 35767946
Alignment:
| Q |
122 |
aactaacccaaaggtggctttcctttataggacgaggaggatttccagtgacccacttgatgatgattactgatcc |
197 |
Q |
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| T |
35767874 |
aactaacccaatggtggttttcc---ataggatgaggaggatctcctctgacccacttgatgatgattgctgatcc |
35767946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 35790193 - 35790229
Alignment:
| Q |
64 |
aagagtaatccatgcaacaactgaacaatgaataaaa |
100 |
Q |
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| T |
35790193 |
aagagtaatccatgcaaaaactgaagaatgaataaaa |
35790229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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