View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2073_low_8 (Length: 377)
Name: NF2073_low_8
Description: NF2073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2073_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 7213188 - 7212826
Alignment:
| Q |
1 |
aatctctgtctgtctaacatttttctgttnnnnnnnnttatgattattggaacttaattgttttgccaaatgccgcttcatagttttctatagcattctt |
100 |
Q |
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| T |
7213188 |
aatctttgtctgtctaacatttttccgtcaaaaaaaattatgattattggaacttaattgttttgccaaatgccgcttcatagttttctatagcattctt |
7213089 |
T |
|
| Q |
101 |
catcaccttaacttccttgtcgttggtgctcaagaacaaaaaacaataatctacagaaagaaaatgagaaatgacaagggtgttcttgaaaatattgtta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
7213088 |
catcaccttaacttccttgtcgttggtgctcaagaacaaaaaacaataatctacaaaaagaagatgagaaatgacaagggtgttcttgaaaatattgtta |
7212989 |
T |
|
| Q |
201 |
ccatgaatgccatctcatgcttcttcttgtctaataagagttgatagaccttcaactgcataaccattaacaataatagaaaaactcataatagaataat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
7212988 |
ccatgaatgccatctcatgcttcttcttgtctaataagagttgatagaacttcaactacataaccattaacaataatagaaaaactcataatagaataat |
7212889 |
T |
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| Q |
301 |
caattgattggagactcacaaccttatacgaggttttgtagaaagttgtagttaaagttcttg |
363 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7212888 |
caattgattggagactcacaaccttatacgaggttttgtagaaagttgtagttaaagttcttg |
7212826 |
T |
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