View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2073_low_9 (Length: 365)
Name: NF2073_low_9
Description: NF2073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2073_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 35744248 - 35743900
Alignment:
| Q |
1 |
acgaggaaccaataacagaaatggaagtggatgataataagcctgtaaaggatacatcagaggatcttgtctgtgatttggacacaaatgaggatgatca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35744248 |
acgaggaaccaataacagaaatggaagtggatgataataagcctgtaaaggatacatcagaggatcttgtctgtgatttggacacaaatgaggatgatca |
35744149 |
T |
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| Q |
101 |
tcatcaaaaaatggttaaacatgatcaagttatggaagaagtggagttaccactatctcctaaacaatttcaaccaaattctcctaaaccaacacaaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35744148 |
tcatcaaaaaatggttaaacatgatcaagttatggaagaagtggagttaccactatctcctaaacaatttcaaccaaattctcctaaaccaacacaaaca |
35744049 |
T |
|
| Q |
201 |
ccttctcatctgcaacaagcatcaatgtctatttcttcatcttctcccccaccccctcctcccctacctgcaccattcacgataatgccnnnnnnngtac |
300 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||| |
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| T |
35744048 |
ccttctcatctacaacaagcatcaatgtctatttcttcatcttctcccccaccccctcctcccctacctgcaccattc---atgatgccaaaaaaagtac |
35743952 |
T |
|
| Q |
301 |
agatattaccaccctcggcacctccaccaccaccgcctccgccacctatgct |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35743951 |
agatattaccaccctcggcacctccaccaccaccgcctccgccacctatgct |
35743900 |
T |
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