View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20740_high_2 (Length: 438)
Name: NF20740_high_2
Description: NF20740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20740_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 20 - 380
Target Start/End: Complemental strand, 34714581 - 34714221
Alignment:
| Q |
20 |
caaatatatttgagaactgaatgtaaatccagttttgtgaatcccaaactaaaaccttgtcacctatctttaatgccaatccatcaaagacggtgtagag |
119 |
Q |
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| T |
34714581 |
caaatatatttgagaactgaatgtaaatccagttttgtgaatcccaaactaaaaccttgtcacctatcattaatgccaatccatcaaagacggtgtagag |
34714482 |
T |
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| Q |
120 |
aaaacaagacttgtttgttgttgcttgaatgacaaggcaaacttgaactctctttgatcttcttaagctgcaggaaggttgagatccaaatccaaagaga |
219 |
Q |
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| T |
34714481 |
aaaacaagacttgtttgttgttgcttgaatgacaaggcaaacttgaactctctttgatcttcttaagctgcaggaaggttgagatccaaatccaaagaga |
34714382 |
T |
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| Q |
220 |
cattcattttctttctaggcggttcttcatcttcttcatctggttgcaaagccattggtgtcgatgaggttgtctccacaggtgcatggtggaaggtcat |
319 |
Q |
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| T |
34714381 |
cattcattttctttctaggtggttcttcatcttcttcgtctggttgcaaagccattggtgtcgatgaggttgtctccacaggtgcatggtggaaggtcat |
34714282 |
T |
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| Q |
320 |
atggccaccaagtgcctggccagatgtgaatttagaaccacaaatggagcacccataaacc |
380 |
Q |
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| T |
34714281 |
atggccaccaagtgcctggccagatgtgaatttagaaccacaaatggagcacccataaacc |
34714221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 20 - 380
Target Start/End: Complemental strand, 34710884 - 34710525
Alignment:
| Q |
20 |
caaatatatttgagaactgaatgtaaatccagttttgtgaatcccaaactaaaaccttgtcacctatctttaatgccaatccatcaaagacggtgtagag |
119 |
Q |
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| T |
34710884 |
caaatatatttaagaaatga-tgtaaacccagtttggtgaatcccaaactaaaactttgtcacttgtcagtaatgacaatccacccaagcaggtgcacag |
34710786 |
T |
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| Q |
120 |
aaaacaagacttgtttgttgttgcttgaatgacaaggcaaacttgaactctctttgatcttcttaagctgcaggaaggttgagatccaaatccaaagaga |
219 |
Q |
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|||||||||||||||||||| |||||| |||| ||| |||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
34710785 |
aaaacaagacttgtttgttgatgcttggatgataagacaaactaggattctctttgatcttcttaagctgcaggaaggttgagatccaaatccaaaggga |
34710686 |
T |
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| Q |
220 |
cattcattttctttctaggcggttcttcatcttcttcatctggttgcaaagccattggtgtcgatgaggttgtctccacaggtgcatggtggaaggtcat |
319 |
Q |
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| T |
34710685 |
cattcattttctttgcaggtggttcttcatcttcttcgtctggttccgaagccattggtgtcgatgaggtttcctccaccggtgcatggtggaaggtcat |
34710586 |
T |
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| Q |
320 |
atggccaccaagtgcctggccagatgtgaatttagaaccacaaatggagcacccataaacc |
380 |
Q |
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| T |
34710585 |
atggccaccaagtgcctggccagatgtgaatttagaaccacaaatggagcacccataaacc |
34710525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 153 - 238
Target Start/End: Complemental strand, 40690150 - 40690062
Alignment:
| Q |
153 |
aaggcaaacttgaactctctttgatcttcttaagctgcaggaaggttgagatccaaatccaaag---agacattcattttctttctagg |
238 |
Q |
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||||||||||| | ||||| ||||| |||| || ||||||||||||||||||||||||||||| | |||||| ||||||||||||| |
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| T |
40690150 |
aaggcaaacttagattctctatgatcatcttcaggtgcaggaaggttgagatccaaatccaaagacaaaacattccttttctttctagg |
40690062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 380
Target Start/End: Complemental strand, 40689975 - 40689911
Alignment:
| Q |
316 |
tcatatggccaccaagtgcctggccagatgtgaatttagaaccacaaatggagcacccataaacc |
380 |
Q |
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||||||||||||| ||||| || ||||||||||||| ||||||||||||||| ||| ||| |||| |
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| T |
40689975 |
tcatatggccacctagtgcttgaccagatgtgaattcagaaccacaaatggaacactcatgaacc |
40689911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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