View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20740_high_5 (Length: 386)
Name: NF20740_high_5
Description: NF20740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20740_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 14 - 366
Target Start/End: Original strand, 28277632 - 28277984
Alignment:
| Q |
14 |
gaagcagtatagcagaccgagttgtgaatgctcataccctttataagagataaatcatgatgaatgacataaaactcaacttgaagaatgtatgttgatt |
113 |
Q |
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| T |
28277632 |
gaagcagtataacagaccgagttgtgaatgctcatactctttacaagagataaatcatgatgaatgacatgaaactcaacttgaagaatgtatgttgatt |
28277731 |
T |
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| Q |
114 |
ctgaattatgtcgtgataaactagcacgccacacatatgaagaattacaaaggataccaccgtagccatccataattggattgcgaaggcaacttccgtc |
213 |
Q |
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| T |
28277732 |
ctgaattatgtcgtgataaactagcacgccacacatatgaagagttacaaaggataccaccgtagccatccataattggattgccaaggcaacttccgtc |
28277831 |
T |
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| Q |
214 |
gacattgataacaatgcaggaaatattaagagttcagtttgtggattgtgcaaacaattgtgaatcctgacaaccatgcatggattgtgcaagcaaggtg |
313 |
Q |
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| T |
28277832 |
gacattgataacagtgcaggaaatattaagagttcagtttgtggattgtgcaaacaactgtgaatcgtgacaaccatgcatggatcgtgcaagcaaggtg |
28277931 |
T |
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| Q |
314 |
agatgatagacggatatggtttcgtggccaaggcagggtgagtacggttcctc |
366 |
Q |
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| T |
28277932 |
agatgatagacggatatggtttcgtggccaaggcagggtgagtacggttcctc |
28277984 |
T |
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