View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20740_low_14 (Length: 250)
Name: NF20740_low_14
Description: NF20740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20740_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 28277642 - 28277516
Alignment:
| Q |
1 |
tatactgcttcttcactttggatcaaactcgttgagtcttcttcaaacaagtttcataagcatgttgtgttgattcaagacattaaaaatatgttacgag |
100 |
Q |
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| T |
28277642 |
tatactgcttcttcactttggatcaaactcattgagtcttcttcaaacaagtttcataagcatgtggtgttgattcaagacattaaaaatatgttacgag |
28277543 |
T |
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| Q |
101 |
aaaatagtcactttagaatcatccaca |
127 |
Q |
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| T |
28277542 |
aaaatagccactttagaatcatccaca |
28277516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 28277299 - 28277187
Alignment:
| Q |
129 |
tatactcaattcaaactttgattttgacggtttaatggatcaaatttaatactaggtcatgctaacaaat-aca-ttataaaggcactcgttaaataacc |
226 |
Q |
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| T |
28277299 |
tatactcaattcaaactttgattttgacggtttaatggatcaaatttaatattagatcatgctaacaaataacatttataaaggcacttgttaaatagcc |
28277200 |
T |
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| Q |
227 |
ttagatatttcat |
239 |
Q |
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| T |
28277199 |
ctcgatatttcat |
28277187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 8434028 - 8433922
Alignment:
| Q |
9 |
ttcttcactttggatcaaactcgttgagtcttcttcaaacaagtttcataagcatgttgtgttgattcaagacattaaaaatatgttacgagaaaatagt |
108 |
Q |
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| T |
8434028 |
ttcttcattttacatcaatctcattgagtcttctccaaacaaactccattagcatgttgtgtcgatgcaagacatcaaagatatgttaagagaaaatatt |
8433929 |
T |
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| Q |
109 |
cacttta |
115 |
Q |
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| T |
8433928 |
cacttta |
8433922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 12495436 - 12495382
Alignment:
| Q |
68 |
tgttgattcaagacattaaaaatatgttacgagaaaatagtcactttagaatcat |
122 |
Q |
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| T |
12495436 |
tgttgattcaagacattaaagacatgttgcaagaaaatggtcgctttagaatcat |
12495382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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