View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20740_low_15 (Length: 249)
Name: NF20740_low_15
Description: NF20740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20740_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 34608348 - 34608128
Alignment:
| Q |
19 |
gctacatctgggagcacaagtcaattacaacttgttaattcagctacacagtgttggcaaaaactattctaactgaactatgttattctgtttgagttag |
118 |
Q |
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| T |
34608348 |
gctacatctgggatcacaagtcaattacaacttgttaattcagctacacagtgttggcaaaaactattctaactgaactatgttattctgtttgagttag |
34608249 |
T |
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| Q |
119 |
aggcttgtttcagaggtataaataagtctcataggaaatctctatgaggaggggctaaggagacaaatttggaatcacattgcactttaagttagaattc |
218 |
Q |
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| T |
34608248 |
aggcttgtttcagaggtataaataagtctcataggaaatctctatgaggaggggctaaggagacaaatttggaatcacgttgcactttaagttagaaatc |
34608149 |
T |
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| Q |
219 |
catgtaactctatgatctgtg |
239 |
Q |
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| T |
34608148 |
catgtaactctatgatttgtg |
34608128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 50 - 226
Target Start/End: Complemental strand, 34594134 - 34593951
Alignment:
| Q |
50 |
ttgttaattcagctacacagt---gttggcaaaaactattctaactgaactatgtt---attctgtttgagttagaggcttgtttcagaggtataaataa |
143 |
Q |
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||||||||||| ||| ||||| ||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
34594134 |
ttgttaattcatctatacagtactgttggcaaaaaatattctaactgaactatgttgttattctgtttcagttagaggcttgtttcggaggtataaataa |
34594035 |
T |
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| Q |
144 |
gtctcataggaaatctctatgaggaggggctaaggagacaaatttggaatcacattgcact-ttaagttagaattccatgtaac |
226 |
Q |
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| T |
34594034 |
gtctcatatgatatctctataaggaagggctaaggagaaaaatttggaatcacattgcagtgtgaagttagaaatccatgtaac |
34593951 |
T |
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