View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20740_low_18 (Length: 210)
Name: NF20740_low_18
Description: NF20740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20740_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 51729082 - 51728890
Alignment:
| Q |
1 |
ttaaaaaagcatcaaagtggtggttttgtaatgaaggaatcaaatttgaagataacactgaggtggaagccgatgtagtgatccttgcaactggttttga |
100 |
Q |
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| T |
51729082 |
ttaaaaaagcatcaaagtggtggttttgtaatgaaggaatcgaatttgaagataacactgaggtggaagccgatgtagtgatccttgcaactggttttaa |
51728983 |
T |
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| Q |
101 |
tggaaagaaaaagatcaaaaccattttaccagagcctttttgtagcctgttggagtacccctctggccttatacctttgtacaggtaagaagt |
193 |
Q |
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| T |
51728982 |
tggaaagaaaaagatcaaaaccattttaccagagcctttttgtagcctgttggagtacccctctggccttatacctttgtacaggtaagaagt |
51728890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 8e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 3 - 160
Target Start/End: Original strand, 19056734 - 19056891
Alignment:
| Q |
3 |
aaaaaagcatcaaagtggtggttttgtaatgaaggaatcaaatttgaagataacactgaggtggaagccgatgtagtgatccttgcaactggttttgatg |
102 |
Q |
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|||| ||||||||||||||| ||||| |||| |||||| ||||||| || |||||| | | || || ||||| || | ||||||||||||| ||||| |
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| T |
19056734 |
aaaagagcatcaaagtggtgtttttggaatggaggaattgaatttgatgacaacactaaaattgatgctgatgttgttcttcttgcaactggttatgatg |
19056833 |
T |
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| Q |
103 |
gaaagaaaaagatcaaaaccattttaccagagcctttttgtagcctgttggagtaccc |
160 |
Q |
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| T |
19056834 |
ggaaaaagaagctcaaaaccattttgccagagcctttttctagcttgttggaataccc |
19056891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 3 - 160
Target Start/End: Complemental strand, 19188465 - 19188308
Alignment:
| Q |
3 |
aaaaaagcatcaaagtggtggttttgtaatgaaggaatcaaatttgaagataacactgaggtggaagccgatgtagtgatccttgcaactggttttgatg |
102 |
Q |
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|||| ||||||||||||||| ||||| |||| |||||| ||||||| || |||||| | | || || ||||| || | ||||||||||||| ||||| |
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| T |
19188465 |
aaaagagcatcaaagtggtgtttttggaatggaggaattgaatttgatgacaacactaaaattgatgctgatgttgttcttcttgcaactggttatgatg |
19188366 |
T |
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| Q |
103 |
gaaagaaaaagatcaaaaccattttaccagagcctttttgtagcctgttggagtaccc |
160 |
Q |
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| || || ||| ||||||||||||| ||||||||||||| |||| ||||||| ||||| |
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| T |
19188365 |
ggaaaaagaagctcaaaaccattttgccagagcctttttctagcttgttggaataccc |
19188308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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