View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20740_low_4 (Length: 429)
Name: NF20740_low_4
Description: NF20740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20740_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 178; Significance: 7e-96; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 20 - 245
Target Start/End: Original strand, 3422555 - 3422780
Alignment:
| Q |
20 |
tcaatgaccgtttatattcaacacacacactcctcaaaccaacgaaacgtcgtttataaaagataaaaccatagaggacttaaactcaaaacagacacta |
119 |
Q |
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| T |
3422555 |
tcaatgaccgtttatattcaacgcacacactcctcaaaccaacaaaacgtcatttataaaagataaaaccatagagaacttaaactcaagagagataata |
3422654 |
T |
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| Q |
120 |
cctcgaaacacagtgggacgtacttagggtggaatggaataattaaatatgctatgttattcactaatcgaaccatgtggtctttaaaccaaaatgaagg |
219 |
Q |
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| T |
3422655 |
ccttgaaacacggtgggacttacttagggtggaatggaataattaaatatgctatgttattcactaatcgaaccatgtggtctttaaaccaaaatgaagt |
3422754 |
T |
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| Q |
220 |
tataaaataaagtaatttgatatagt |
245 |
Q |
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|||||||||||||||||||||||||| |
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| T |
3422755 |
tataaaataaagtaatttgatatagt |
3422780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 303 - 418
Target Start/End: Original strand, 3422838 - 3422953
Alignment:
| Q |
303 |
ttgtactgtattcaagacagcctgtggaccatttacccactttcacagaacacagtacaaaatttatgtagattcttcactctccaaaatctatcacagt |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3422838 |
ttgtactgtattcaagacagcctgtggaccatttacccactttcacagaacacagtacaaaatttatgtagattcttcactctccaaaatctatcacagt |
3422937 |
T |
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| Q |
403 |
tcatcattagattcat |
418 |
Q |
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|||||||||||||||| |
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| T |
3422938 |
tcatcattagattcat |
3422953 |
T |
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