View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20740_low_6 (Length: 373)
Name: NF20740_low_6
Description: NF20740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20740_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 12 - 287
Target Start/End: Complemental strand, 24293526 - 24293250
Alignment:
| Q |
12 |
atgaaggagaagaatttgaggataaaaagagcacgaaaggagaagacatggtgtcagtgttaacgtcaataacatctacaattgaatgttcaacgtgcga |
111 |
Q |
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| T |
24293526 |
atgaaggagaagaatttgaggataaaaagagcacgaaaggagaagacatggtgtcagtgttaacgtcgataacatctacaattgaatgttcaatgtgcga |
24293427 |
T |
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| Q |
112 |
ttattgaagttaagaagtaaacttcaatatatataatgcatatacatacatttcaacaagggagcaagtttgacattcaatttttata-tcgttttgtag |
210 |
Q |
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| T |
24293426 |
ttattgaagttaagaagtaaacttcaacatatataatgcatatacatacatttcaacaagggagcatgtttgacattcaatttttatattcgttttgtag |
24293327 |
T |
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| Q |
211 |
agaaaattagtgcctcgacacatatcaaccgaatgaatgatgatcaagtgatgaatttaatgcaataccatggattg |
287 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24293326 |
agaaaattggtgcctcgacacatatcaaccgaatgaatgatgatcaagtgatgaatttaatgcaataccatggattg |
24293250 |
T |
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