View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20740_low_7 (Length: 352)
Name: NF20740_low_7
Description: NF20740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20740_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 19 - 293
Target Start/End: Original strand, 33801785 - 33802059
Alignment:
| Q |
19 |
tttacggatatcattctgcatagtccaataagtctgtggagttttgaaaccagctgaaagaacaacatcaccagatttgatctcaagaacataggtcaag |
118 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33801785 |
tttacggttatcattctgcatagtccaataagtctgtggagttttgaaaccagctgaaagaacaacatcaccagatttgatctcaagaacataggtcaag |
33801884 |
T |
|
| Q |
119 |
ttatttgaactaggttcactggtaagtttcattccctctttgaaatcttgtgaaggcattaaagtatcagttggataactaaaactttgccaaattaccg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33801885 |
ttatttgaactaggttcactggtaagtttcattccctctttgaaatcttgtgaaggcattaaagtatcagttggataactaaaactttgccaaattaccg |
33801984 |
T |
|
| Q |
219 |
tattattgtcgtcgttaccaagcaaaaccaaatttccagtgtcttgcaattccattgttttgctaattgtgtttg |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33801985 |
tattattgtcgtcgttaccaagcaaaaccaaatttccagtgtcttgcaattccattgttttgctaattgtgtttg |
33802059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 19 - 293
Target Start/End: Original strand, 33806267 - 33806541
Alignment:
| Q |
19 |
tttacggatatcattctgcatagtccaataagtctgtggagttttgaaaccagctgaaagaacaacatcaccagatttgatctcaagaacataggtcaag |
118 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33806267 |
tttacggttatcattctgcatagtccaataagtctgtggagttttgaaaccagctgaaagaacaacatcaccagatttgatctcaagaacataggtcaag |
33806366 |
T |
|
| Q |
119 |
ttatttgaactaggttcactggtaagtttcattccctctttgaaatcttgtgaaggcattaaagtatcagttggataactaaaactttgccaaattaccg |
218 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33806367 |
ttatttgaactaggttcactggtaagtttcattccctctttgaaatcttgtgaaggcattaaagtatcagttggataactaaaactttgccaaattaccg |
33806466 |
T |
|
| Q |
219 |
tattattgtcgtcgttaccaagcaaaaccaaatttccagtgtcttgcaattccattgttttgctaattgtgtttg |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33806467 |
tattattgtcgtcgttaccaagcaaaaccaaatttccagtgtcttgcaattccattgttttgctaattgtgtttg |
33806541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 293
Target Start/End: Complemental strand, 33812037 - 33811763
Alignment:
| Q |
19 |
tttacggatatcattctgcatagtccaataagtctgtggagttttgaaaccagctgaaagaacaacatcaccagatttgatctcaagaacataggtcaag |
118 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33812037 |
tttacggttatcattctgcatagtccaataagtctgtggagttttgaaaccagctgaaagaacaacatcaccagatttgatctcaagaacataggtcaag |
33811938 |
T |
|
| Q |
119 |
ttatttgaactaggttcactggtaagtttcattccctctttgaaatcttgtgaaggcattaaagtatcagttggataactaaaactttgccaaattaccg |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33811937 |
ttatttgaactaggttcactggtaagtttcattccctctttgaaatcctgtgaatgcatcaaagtatcagttggataactaaaactttgccaaattaccg |
33811838 |
T |
|
| Q |
219 |
tattattgtcgtcgttaccaagcaaaaccaaatttccagtgtcttgcaattccattgttttgctaattgtgtttg |
293 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
33811837 |
tattattgtcgtccttaccaagcaaaaccaaatttccagtgttttgcaattccattgttttgctaattgtgtttg |
33811763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 19 - 293
Target Start/End: Complemental strand, 31027711 - 31027437
Alignment:
| Q |
19 |
tttacggatatcattctgcatagtccaataagtctgtggagttttgaaaccagctgaaagaacaacatcaccagatttgatctcaagaacataggtcaag |
118 |
Q |
| |
|
||||||| |||| ||||||||||||||||| || |||||||||||| ||||||||||||||| ||||| ||| ||||||||||||||||||||||||||| |
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| T |
31027711 |
tttacggttatccttctgcatagtccaatatgtttgtggagttttgtaaccagctgaaagaataacattacctgatttgatctcaagaacataggtcaag |
31027612 |
T |
|
| Q |
119 |
ttatttgaactaggttcactggtaagtttcattccctctttgaaatcttgtgaaggcattaaagtatcagttggataactaaaactttgccaaattaccg |
218 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| || || |||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31027611 |
ttatttggactaggttcactggtaagtttcattccctctttgaattcctgcgaaggcatcaaagtatcagttggataactaaaactttgccaaattaccg |
31027512 |
T |
|
| Q |
219 |
tattattgtcgtcgttaccaagcaaaaccaaatttccagtgtcttgcaattccattgttttgctaattgtgtttg |
293 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
31027511 |
tatcattgtcgtcgttaccaagcaaaaccaaatttccattgtcttgcaattccattgctttgctaattgtgtttg |
31027437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 285 - 352
Target Start/End: Complemental strand, 33802119 - 33802052
Alignment:
| Q |
285 |
ttgtgtttgataaaaaaggaaatgcctatttatagaggaatggaactgtgatctggtctacaaacaca |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
33802119 |
ttgtgtttgataaaaaaggaaatgcctatttacagaggaatggaactgtgatctggtctacaaacaca |
33802052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 285 - 352
Target Start/End: Complemental strand, 33806601 - 33806534
Alignment:
| Q |
285 |
ttgtgtttgataaaaaaggaaatgcctatttatagaggaatggaactgtgatctggtctacaaacaca |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
33806601 |
ttgtgtttgataaaaaaggaaatgcctatttacagaggaatggaactgtgatctggtctacaaacaca |
33806534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 289 - 352
Target Start/End: Original strand, 33811707 - 33811770
Alignment:
| Q |
289 |
gtttgataaaaaaggaaatgcctatttatagaggaatggaactgtgatctggtctacaaacaca |
352 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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|
| T |
33811707 |
gtttgataaaaaaggaaatgcctatttactgaaagatggaactgtgatctggtctacaaacaca |
33811770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 287 - 352
Target Start/End: Original strand, 31027379 - 31027444
Alignment:
| Q |
287 |
gtgtttgataaaaaaggaaatgcctatttatagaggaatggaactgtgatctggtctacaaacaca |
352 |
Q |
| |
|
|||||||||||||| |||||||||| ||| ||| |||||| |||||||||||||||||||||| |
|
|
| T |
31027379 |
gtgtttgataaaaatggaaatgcctttttggagaaagatggaattgtgatctggtctacaaacaca |
31027444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 34 - 252
Target Start/End: Complemental strand, 49462663 - 49462448
Alignment:
| Q |
34 |
ctgcatagtccaataagtctgtggagttttgaaaccagctgaaagaacaacatcaccagatttgatctcaagaacataggtcaagttatttgaactaggt |
133 |
Q |
| |
|
|||||||||||||||| ||||||| |||| |||||||| ||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||| |
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|
| T |
49462663 |
ctgcatagtccaataaacctgtggaattttaaaaccagcagaaagaacaacattaccagatttaatctcaagaacataggtcaaattatttgaactaggt |
49462564 |
T |
|
| Q |
134 |
tcactggtaagtttcattccctctttgaaatcttgtgaaggcattaaagtatcagttggataactaaaactttgccaaattaccgtattattgtcgtcgt |
233 |
Q |
| |
|
||||| |||| |||||||| || || ||| | ||| |||||| ||||||||||| ||| || |||||||||||||||||||||| |||| || | |
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|
| T |
49462563 |
tcactagtaatcttcattccttccttaaaaacctgttgaggcatcaaagtatcagtaggaaaatcaaaactttgccaaattaccgtactatt---atcct |
49462467 |
T |
|
| Q |
234 |
taccaagcaaaaccaaatt |
252 |
Q |
| |
|
| ||||||||||||||||| |
|
|
| T |
49462466 |
tcccaagcaaaaccaaatt |
49462448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 32 - 162
Target Start/End: Original strand, 10071288 - 10071418
Alignment:
| Q |
32 |
ttctgcatagtccaataagtctgtggagttttgaaaccagctgaaagaacaacatcaccagatttgatctcaagaacataggtcaagttatttgaactag |
131 |
Q |
| |
|
|||||||||||| | |||||| ||||||||| |||||||| |||| || | ||| ||||||||| |||| ||||||||||||| ||||||||| | ||| |
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|
| T |
10071288 |
ttctgcatagtctagtaagtcagtggagtttccaaaccagcagaaacaatagcattaccagattttatctgaagaacataggtcgagttatttggaatag |
10071387 |
T |
|
| Q |
132 |
gttcactggtaagtttcattccctctttgaa |
162 |
Q |
| |
|
||||||| ||||||||| || |||||||||| |
|
|
| T |
10071388 |
gttcacttgtaagtttctttacctctttgaa |
10071418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 55 - 125
Target Start/End: Original strand, 7815117 - 7815187
Alignment:
| Q |
55 |
tggagttttgaaaccagctgaaagaacaacatcaccagatttgatctcaagaacataggtcaagttatttg |
125 |
Q |
| |
|
|||||||||||||| ||||||||| | ||||| ||||||||||||||||| |||| ||||||||||||||| |
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|
| T |
7815117 |
tggagttttgaaacaagctgaaagtataacattaccagatttgatctcaataacaaaggtcaagttatttg |
7815187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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