View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20741_high_1 (Length: 415)
Name: NF20741_high_1
Description: NF20741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20741_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 229 - 407
Target Start/End: Complemental strand, 41999928 - 41999750
Alignment:
| Q |
229 |
tgatccagatcattacgctttgttgttcttgtgaattgtgattacatttttagtcatgaagatgatgtatctcctacctagtttaacatagtgcatgtta |
328 |
Q |
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| T |
41999928 |
tgatccagatcattacgctttgttgttcttgtgaattgtgattacatttttagtcatgaagatgatgtatctcctacctagtttaacatagtgcatgtta |
41999829 |
T |
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| Q |
329 |
tttccacatgcaaccccgagtggtgcaatggttccacatgccccttatgataggacattttgatatgattatattcttc |
407 |
Q |
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| T |
41999828 |
tttccacatgcaacgccgagtggtgcaatggttccacatgccccttatgataggacattttgatatgattatattcttc |
41999750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 42000139 - 41999955
Alignment:
| Q |
18 |
caacacacattgtcgtggcattttcatttaccaaatattcatgtgtcacaagtttttattacaccataaaatttcatttattttagagatgaagtggtcc |
117 |
Q |
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| T |
42000139 |
caacacacattgtcgtggcattttcatttaccaaatattcatgtgtcacaagtttttattacaccataaaatttcatttatattagagatgaagtggtcc |
42000040 |
T |
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| Q |
118 |
aaaaaatttcattttttatgtggctaataccaccccacctctccccccaataatgttccattatttcactacattattgacaacg |
202 |
Q |
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| T |
42000039 |
aaaaaatttcattttttatgtggctaataccgtcacacctctccctccaataatgttccattatttcactacattattgacaacg |
41999955 |
T |
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