View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20741_high_2 (Length: 384)
Name: NF20741_high_2
Description: NF20741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20741_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 8882497 - 8882858
Alignment:
| Q |
1 |
tctctgtatacaatatatctcttatggttatgtacagaaagtaccaccaaaagaagttataagagccacttgaaattgctcaattttaactttccctgtt |
100 |
Q |
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| T |
8882497 |
tctctgtatacaatatatctcatatggttatgtacagaaagtaccaccaaaagaagttataagagccacttgaaatggctcaattttaactttccctgtt |
8882596 |
T |
|
| Q |
101 |
tggaagtatagaaagaaccactgaaagtctgaaacaacttagggtttactggacttgtttgcactacaaaatttattgtaggaccatatggcaacagatt |
200 |
Q |
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| T |
8882597 |
tggaagtatagaaaaaaccactgaaagtctgaaacaacttagggtttactggacttgtttgcactacaaaatttattgtaggaccatatggcaacagatt |
8882696 |
T |
|
| Q |
201 |
agaacactaacaggaaacgaaaatacaatgaccatatatacaatcaaaatatttgcccaatcaaaagaataatcaaatgcttacagttcccaaagacata |
300 |
Q |
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|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
8882697 |
agaacactaacaggaaacaaaaatacaatgacc----atacaatcaaaatatttgcccaatcaaaagaataatcaaatgcttacaggtcccaaagacata |
8882792 |
T |
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| Q |
301 |
gttcaaatggttgaactgaagaaacacctaaaagaatttgaaaataagctccatagttcaaatgat |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8882793 |
gttcaaatggttgaactgaagaaacacctaaaagaatttgaaaataagctccatagttcaaatgat |
8882858 |
T |
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