View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20741_high_5 (Length: 211)

Name: NF20741_high_5
Description: NF20741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20741_high_5
NF20741_high_5
[»] chr8 (7 HSPs)
chr8 (1-211)||(38061276-38061486)
chr8 (111-188)||(13274501-13274578)
chr8 (106-170)||(29275808-29275872)
chr8 (110-185)||(19385680-19385755)
chr8 (107-170)||(21241097-21241160)
chr8 (113-155)||(44313256-44313298)
chr8 (113-155)||(44317068-44317110)
[»] chr2 (4 HSPs)
chr2 (1-169)||(24407323-24407491)
chr2 (1-170)||(24411914-24412083)
chr2 (87-185)||(13437699-13437796)
chr2 (113-168)||(36050198-36050253)
[»] chr7 (4 HSPs)
chr7 (78-185)||(24509576-24509683)
chr7 (78-188)||(2435121-2435231)
chr7 (91-170)||(2432921-2433000)
chr7 (111-185)||(43697351-43697425)
[»] chr6 (4 HSPs)
chr6 (78-185)||(21182568-21182675)
chr6 (22-185)||(20758669-20758839)
chr6 (110-185)||(34237308-34237383)
chr6 (113-155)||(34099594-34099636)
[»] chr4 (7 HSPs)
chr4 (87-185)||(6686461-6686559)
chr4 (84-170)||(6683243-6683329)
chr4 (95-169)||(17538528-17538603)
chr4 (95-169)||(17539575-17539650)
chr4 (107-184)||(579930-580007)
chr4 (117-170)||(8532494-8532547)
chr4 (117-170)||(8532765-8532818)
[»] chr1 (5 HSPs)
chr1 (78-163)||(8753255-8753340)
chr1 (84-158)||(49873196-49873270)
chr1 (110-168)||(964638-964696)
chr1 (78-185)||(48713564-48713669)
chr1 (113-153)||(4673386-4673426)
[»] chr3 (4 HSPs)
chr3 (106-170)||(6240151-6240215)
chr3 (113-185)||(26362578-26362650)
chr3 (96-170)||(36666061-36666135)
chr3 (113-153)||(4167772-4167812)
[»] scaffold0211 (1 HSPs)
scaffold0211 (107-185)||(20846-20924)


Alignment Details
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 38061486 - 38061276
Alignment:
Q  1 ttgagattgctgtgtaattaaatcaccgaccacaactttatcagtatctttcacaaccaaatttaacccgttaccgaatcaatatctgtagaacgaacaa 100  Q
    ||||||||| |||||||||| |||||||||||| |||||||||| |||||| |||| |||||| |||||| |||||||| ||||||||||||||||||||    
T  38061486 ttgagattgttgtgtaattagatcaccgaccactactttatcagcatctttaacaatcaaattaaacccgctaccgaattaatatctgtagaacgaacaa 38061387  T
Q  101 gcagtgaagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcacacaggatttaacatacataccaaggaaa 200  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |   ||||||||||||  || ||||||||    
T  38061386 gcagtgaagtagtctgagacgtgctgatcaaactgtccttaaggattttccgcgtaattatacgctaatccccttggatttaacataactaacaaggaaa 38061287  T
Q  201 attattttcaa 211  Q
    |||||||||||    
T  38061286 attattttcaa 38061276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 111 - 188
Target Start/End: Original strand, 13274501 - 13274578
Alignment:
Q  111 agtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcacacaggatttaacatac 188  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||| |  ||||| ||||||||    
T  13274501 agtctgagacgtgctgatcgcactgtccttaaagattttccgcgtaattatacgttaatcccctaggatataacatac 13274578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 106 - 170
Target Start/End: Complemental strand, 29275872 - 29275808
Alignment:
Q  106 gaagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatc 170  Q
    |||||||||||||||||||| |||| ||| || ||||||||||||||||| ||||||||||||||    
T  29275872 gaagtagtctgagacgtgctaatcgcactatctttaaggattttccgcgtgattatacgctaatc 29275808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 185
Target Start/End: Original strand, 19385680 - 19385755
Alignment:
Q  110 tagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcacacaggatttaaca 185  Q
    ||||||||||||||||||||| ||| ||||| | |||||| | |||||||||||||||| | | || |||||||||    
T  19385680 tagtctgagacgtgctgatcgcactatccttcatgatttttcacgtaattatacgctaaccccccaagatttaaca 19385755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 170
Target Start/End: Original strand, 21241097 - 21241160
Alignment:
Q  107 aagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatc 170  Q
    |||||||||||||| | ||||||  | | |||||||||||||||||| ||||||||||||||||    
T  21241097 aagtagtctgagacatactgatcacaatatccttaaggattttccgcataattatacgctaatc 21241160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 44313298 - 44313256
Alignment:
Q  113 tctgagacgtgctgatcgaactgtccttaaggattttccgcgt 155  Q
    ||||||||||||||| || |||||||| |||||||||||||||    
T  44313298 tctgagacgtgctgaacgcactgtcctcaaggattttccgcgt 44313256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 44317110 - 44317068
Alignment:
Q  113 tctgagacgtgctgatcgaactgtccttaaggattttccgcgt 155  Q
    ||||||||||||||| || |||||||| |||||||||||||||    
T  44317110 tctgagacgtgctgaacgcactgtcctcaaggattttccgcgt 44317068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 24407491 - 24407323
Alignment:
Q  1 ttgagattgctgtgtaattaaatcaccgaccacaactttatcagtatctttcacaaccaaatttaacccgttaccgaatcaatatctgtagaacgaacaa 100  Q
    |||||||||||||  ||||| |||||||||||||| |||||||  |||||| ||||||||||| || | | ||||||||||  || |||||||| || ||    
T  24407491 ttgagattgctgttgaattatatcaccgaccacaaatttatcaacatctttgacaaccaaattaaatctgctaccgaatcatcatatgtagaacaaataa 24407392  T
Q  101 gcagtgaagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaat 169  Q
    | |||||||||||||||||||||| ||||| |||||||||| |||||||| |||||||||| |||||||    
T  24407391 gtagtgaagtagtctgagacgtgccgatcgcactgtccttatggattttctgcgtaattatgcgctaat 24407323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 24411914 - 24412083
Alignment:
Q  1 ttgagattgctgtgtaattaaatcaccgaccacaactttatcagtatctttcacaaccaaatttaacccgttaccgaatcaatatctgtagaacgaacaa 100  Q
    ||||||||| |||  ||||| ||||||||| |||| |||||||  |||||| |||| |||||| || | | ||||||||||  || |||||||| |||||    
T  24411914 ttgagattgttgttgaattatatcaccgactacaaatttatcaacatctttgacaagcaaattaaatctgctaccgaatcatcatatgtagaacaaacaa 24412013  T
Q  101 gcagtgaagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatc 170  Q
    | ||||||||||||||||| |||| ||| | |||||||||| ||||||| ||||||||||| | ||||||    
T  24412014 gtagtgaagtagtctgagatgtgccgatggcactgtccttatggattttacgcgtaattatgctctaatc 24412083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 87 - 185
Target Start/End: Original strand, 13437699 - 13437796
Alignment:
Q  87 tgtagaacgaacaagcagtgaagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcacacaggatttaaca 185  Q
    ||||||||||||||||||||| ||||||||||| ||| | |||| |||||| ||||||||||||| |||||||||||||||||| | ||||||||||||    
T  13437699 tgtagaacgaacaagcagtgaggtagtctgagatgtgttaatcgcactgtctttaaggattttccacgtaattatacgctaatc-ctcaggatttaaca 13437796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 113 - 168
Target Start/End: Complemental strand, 36050253 - 36050198
Alignment:
Q  113 tctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaa 168  Q
    |||||||||||||||||| |||||||||||| |||||  |||||||||||||||||    
T  36050253 tctgagacgtgctgatcgcactgtccttaagaattttttgcgtaattatacgctaa 36050198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 78 - 185
Target Start/End: Original strand, 24509576 - 24509683
Alignment:
Q  78 atcaatatctgtagaacgaacaagcagtgaagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcacacagg 177  Q
    ||||| || |||||||||||||| |||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| | ||||    
T  24509576 atcaaaatatgtagaacgaacaaccagtgaggtagtctgagacgtgctgatcgcactgtccttaagaattttccgcgtaattatacgctaatcgcccagg 24509675  T
Q  178 atttaaca 185  Q
    ||||||||    
T  24509676 atttaaca 24509683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 78 - 188
Target Start/End: Complemental strand, 2435231 - 2435121
Alignment:
Q  78 atcaatatctgtagaacgaacaagcagtgaagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcacacagg 177  Q
    ||||| |||||| |||||||||| || ||| ||||||| |||||||||||||| ||| | |||||||||||| |||||||||||||| ||||| | || |    
T  2435231 atcaagatctgtggaacgaacaaacaatgaggtagtcttagacgtgctgatcgcacttttcttaaggatttttcgcgtaattatacgttaatcccccaag 2435132  T
Q  178 atttaacatac 188  Q
    |||||||||||    
T  2435131 atttaacatac 2435121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 91 - 170
Target Start/End: Complemental strand, 2433000 - 2432921
Alignment:
Q  91 gaacgaacaagcagtgaagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatc 170  Q
    |||||||||| || ||| |||| |||| || ||||||||  |||||||||||||||||||| ||||||||||||||||||    
T  2433000 gaacgaacaaacaatgaggtagactgaaacatgctgatcacactgtccttaaggattttccacgtaattatacgctaatc 2432921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 185
Target Start/End: Complemental strand, 43697425 - 43697351
Alignment:
Q  111 agtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcacacaggatttaaca 185  Q
    ||||||||||||||||||||   |||||||||||||||| | |||||||||| ||||| | | ||||||||||||    
T  43697425 agtctgagacgtgctgatcgcgttgtccttaaggatttttcacgtaattatatgctaaccgcccaggatttaaca 43697351  T

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Target: chr6 (Bit Score: 72; Significance: 6e-33; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 78 - 185
Target Start/End: Original strand, 21182568 - 21182675
Alignment:
Q  78 atcaatatctgtagaacgaacaagcagtgaagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcacacagg 177  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||| |||||| || ||||||||||||||||| | ||||    
T  21182568 atcaaaatctgtagaacgaacaagcagtgaggtagtctgagacgtgctgatcgcattgtccttaatgatttttcgtgtaattatacgctaatccctcagg 21182667  T
Q  178 atttaaca 185  Q
    ||||||||    
T  21182668 atttaaca 21182675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 22 - 185
Target Start/End: Original strand, 20758669 - 20758839
Alignment:
Q  22 atcaccgaccacaactttatcagtatctttcacaaccaaatttaacccgttaccgaatcaata-------tctgtagaacgaacaagcagtgaagtagtc 114  Q
    ||||||||||||||||||||||  |||||| ||||||||||  || | | ||||||||||||        ||| |||||||||||| |||||| ||||||    
T  20758669 atcaccgaccacaactttatcaacatctttgacaaccaaataaaatctgctaccgaatcaattatcaaggtctatagaacgaacaaacagtgaggtagtc 20758768  T
Q  115 tgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcacacaggatttaaca 185  Q
    |||||||||||||||  |||||||||||| ||||||| |||  ||||||||||||| | || |||||||||    
T  20758769 tgagacgtgctgatcacactgtccttaagaattttccacgtgtttatacgctaatcccccaagatttaaca 20758839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 110 - 185
Target Start/End: Original strand, 34237308 - 34237383
Alignment:
Q  110 tagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcacacaggatttaaca 185  Q
    ||||||||||| |  |||||| |||||||||||||||||||||||||||||||| |||||  |  |||||||||||    
T  34237308 tagtctgagacatattgatcgcactgtccttaaggattttccgcgtaattatacactaatttcctaggatttaaca 34237383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 155
Target Start/End: Original strand, 34099594 - 34099636
Alignment:
Q  113 tctgagacgtgctgatcgaactgtccttaaggattttccgcgt 155  Q
    ||||||||||||||| || |||||||| |||||||||||||||    
T  34099594 tctgagacgtgctgaacgcactgtcctcaaggattttccgcgt 34099636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 2e-32; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 87 - 185
Target Start/End: Complemental strand, 6686559 - 6686461
Alignment:
Q  87 tgtagaacgaacaagcagtgaagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcacacaggatttaaca 185  Q
    ||||||| ||||||| ||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  6686559 tgtagaatgaacaagtagtgaggcagtctgagacgtgctgatcgcactgtccttaaggattttccgcgtaattatacgctaatcccccaggatttaaca 6686461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 84 - 170
Target Start/End: Complemental strand, 6683329 - 6683243
Alignment:
Q  84 atctgtagaacgaacaagcagtgaagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatc 170  Q
    |||||||||||||||||| ||||| | |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  6683329 atctgtagaacgaacaagtagtgaggcagtctgagacgtgctgatcgcactgtccttaagaattttccgcgtaattatacgctaatc 6683243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 95 - 169
Target Start/End: Complemental strand, 17538603 - 17538528
Alignment:
Q  95 gaacaagcagtgaa-gtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaat 169  Q
    |||||| ||||||| ||||||| |||||||||||||| ||||| |||||| |||||||||||||||||||||||||    
T  17538603 gaacaaacagtgaaagtagtctaagacgtgctgatcgcactgtgcttaagcattttccgcgtaattatacgctaat 17538528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 95 - 169
Target Start/End: Complemental strand, 17539650 - 17539575
Alignment:
Q  95 gaacaagcagtgaa-gtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaat 169  Q
    |||||| ||||||| ||||||| |||||||||||||| ||||| |||||| |||||||||||||||||||||||||    
T  17539650 gaacaaacagtgaaagtagtctaagacgtgctgatcgcactgtgcttaagcattttccgcgtaattatacgctaat 17539575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 107 - 184
Target Start/End: Original strand, 579930 - 580007
Alignment:
Q  107 aagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcacacaggatttaac 184  Q
    ||||||||||| || ||||||||| ||||| ||||||||||||||||||||||||||| ||||| | ||| |||||||    
T  579930 aagtagtctgaaacatgctgatcgcactgttcttaaggattttccgcgtaattatacgttaatcccccagaatttaac 580007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 8532494 - 8532547
Alignment:
Q  117 agacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatc 170  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  8532494 agacgtgctgatcgcactgtccttaagaattttccgcgtaattatacgctaatc 8532547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 8532765 - 8532818
Alignment:
Q  117 agacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatc 170  Q
    |||||||||||||  ||||||||||| |||||| ||||||||||||||||||||    
T  8532765 agacgtgctgatcacactgtccttaatgatttttcgcgtaattatacgctaatc 8532818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 3e-22; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 78 - 163
Target Start/End: Original strand, 8753255 - 8753340
Alignment:
Q  78 atcaatatctgtagaacgaacaagcagtgaagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatac 163  Q
    ||||| || ||||||||||||||||||||| ||||||||||||| |||||||  |||||| ||||| |||||||||||||||||||    
T  8753255 atcaagatatgtagaacgaacaagcagtgaggtagtctgagacgagctgatcacactgtctttaagaattttccgcgtaattatac 8753340  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 84 - 158
Target Start/End: Original strand, 49873196 - 49873270
Alignment:
Q  84 atctgtagaacgaacaagcagtgaagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaat 158  Q
    |||||||||||||||   |||||| |||||||||||||||||||||| | ||| |||||| ||||||||||||||    
T  49873196 atctgtagaacgaactgacagtgaggtagtctgagacgtgctgatcgcattgttcttaagaattttccgcgtaat 49873270  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 964696 - 964638
Alignment:
Q  110 tagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaa 168  Q
    |||||||||||||||| |||| ||||||||||||||||||| || ||| ||||||||||    
T  964696 tagtctgagacgtgcttatcgcactgtccttaaggattttctgcataaatatacgctaa 964638  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 185
Target Start/End: Original strand, 48713564 - 48713669
Alignment:
Q  78 atcaatatctgtagaacgaacaagcagtgaagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcacacagg 177  Q
    ||||| ||||||||||| |||| ||| | |  |||||||||||||| |||||| ||||| |||||||||||||  ||| |||||||||||| | | ||||    
T  48713564 atcaagatctgtagaacaaacacgcaataagatagtctgagacgtgttgatcgcactgt-cttaaggattttctacgtgattatacgctaaac-cccagg 48713661  T
Q  178 atttaaca 185  Q
    ||||||||    
T  48713662 atttaaca 48713669  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 153
Target Start/End: Original strand, 4673386 - 4673426
Alignment:
Q  113 tctgagacgtgctgatcgaactgtccttaaggattttccgc 153  Q
    ||||||||||||||| || |||||||| |||||||||||||    
T  4673386 tctgagacgtgctgaacgtactgtcctcaaggattttccgc 4673426  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 170
Target Start/End: Original strand, 6240151 - 6240215
Alignment:
Q  106 gaagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatc 170  Q
    ||||||||||||||| ||||||||  |||||| ||||||||||||||| ||||||||| ||||||    
T  6240151 gaagtagtctgagacatgctgatcacactgtctttaaggattttccgcttaattatactctaatc 6240215  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 185
Target Start/End: Complemental strand, 26362650 - 26362578
Alignment:
Q  113 tctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcacacaggatttaaca 185  Q
    ||||||| || ||||||| | |||||||||||||||| ||| |||||||||||||||| | || |||||||||    
T  26362650 tctgagatgtactgatcgcattgtccttaaggatttttcgcataattatacgctaatccctcatgatttaaca 26362578  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 170
Target Start/End: Complemental strand, 36666135 - 36666061
Alignment:
Q  96 aacaagcagtgaagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatc 170  Q
    |||||||||||| ||| ||| ||||||| |||||| ||| |||||||| ||||||  | ||||||||| ||||||    
T  36666135 aacaagcagtgaggtaatctcagacgtgttgatcgcactttccttaagtattttctacctaattatacactaatc 36666061  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 153
Target Start/End: Original strand, 4167772 - 4167812
Alignment:
Q  113 tctgagacgtgctgatcgaactgtccttaaggattttccgc 153  Q
    |||||||||||||||||| |||||||| || ||||||||||    
T  4167772 tctgagacgtgctgatcgcactgtcctcaaagattttccgc 4167812  T

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Target: scaffold0211 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 107 - 185
Target Start/End: Original strand, 20846 - 20924
Alignment:
Q  107 aagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcacacaggatttaaca 185  Q
    ||||||| ||||||||| |||||| ||| |||||||  |||||| ||||||||||| |||||||   ||||||||||||    
T  20846 aagtagtatgagacgtgttgatcgcactatccttaaaaattttctgcgtaattatatgctaatcctccaggatttaaca 20924  T

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