View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20741_low_3 (Length: 250)
Name: NF20741_low_3
Description: NF20741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20741_low_3 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 11683431 - 11683193
Alignment:
| Q |
12 |
tattctattttcatacatttttctctttcatgaaaaattgcggtgctcatattcataacatggtttaatgctgcaggaggtggaggaatattttaccaat |
111 |
Q |
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| T |
11683431 |
tattctattttcgtacatttttctctttcatgaaaaattgcggtgctcatattcataacatggtttaatgctgcaggaggtggaggaatattttaccaat |
11683332 |
T |
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| Q |
112 |
tacatactcaatgacagtcttggaataattgccaatgcacacattgtctttgcagataaggaacctggtaaagcaatggctgagccatgtattgaacttg |
211 |
Q |
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| T |
11683331 |
tacatactcaatgacagtcttggaataattgccaatgcacacattgtctttgcagataaggaacctggtaaagcaatggctgagccatgtattgaacttg |
11683232 |
T |
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| Q |
212 |
caaagctattctcagtagcagttgattttccaaaaaccg |
250 |
Q |
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| T |
11683231 |
caaagctattctcagtagcagttgattttccaaaaaccg |
11683193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 64 - 250
Target Start/End: Complemental strand, 11675795 - 11675609
Alignment:
| Q |
64 |
tcataacatggtttaatgctgcaggaggtggaggaatattttaccaattacatactcaatgacagtcttggaataattgccaatgcacacattgtctttg |
163 |
Q |
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| T |
11675795 |
tcataacatggttttatggtgcaggaggtggaggagtattttaccaattacatgctcaatgacagtcttggaataatttccaatgcacacactgtctttg |
11675696 |
T |
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| Q |
164 |
cagataaggaacctggtaaagcaatggctgagccatgtattgaacttgcaaagctattctcagtagcagttgattttccaaaaaccg |
250 |
Q |
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| T |
11675695 |
cagataaagaacctgctaaagcaatgtctgagccatgtattgaacttgcaaagctattctcaatagcagttgattttccaaaaaccg |
11675609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 67 - 245
Target Start/End: Original strand, 11639611 - 11639789
Alignment:
| Q |
67 |
taacatggtttaatgctgcaggaggtggaggaatattttaccaattacatactcaatgacagtcttggaataattgccaatgcacacattgtctttgcag |
166 |
Q |
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| T |
11639611 |
taacatggtttaatggtgcaggaggtggaggagtatttcaccaattatatactcaatgacagtctcggaataattgccaatgcacacacagtctttgcag |
11639710 |
T |
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| Q |
167 |
ataaggaacctggtaaagcaatggctgagccatgtattgaacttgcaaagctattctcagtagcagttgattttccaaa |
245 |
Q |
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| T |
11639711 |
ataaagaacctgctaaagcaatgtctgagccatgtatcgagcttgcaaagctattctcaatagcagttgactttccaaa |
11639789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 66 - 250
Target Start/End: Original strand, 11630848 - 11631032
Alignment:
| Q |
66 |
ataacatggtttaatgctgcaggaggtggaggaatattttaccaattacatactcaatgacagtcttggaataattgccaatgcacacattgtctttgca |
165 |
Q |
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| T |
11630848 |
ataacatggttttatggtgcaggaagtgcagaagtattttaccgattacatactcaatgattgtcttggaataattgccaatgcacacactgtctttgca |
11630947 |
T |
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| Q |
166 |
gataaggaacctggtaaagcaatggctgagccatgtattgaacttgcaaagctattctcagtagcagttgattttccaaaaaccg |
250 |
Q |
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| T |
11630948 |
gacaaagaacctggaaaagcaatggctgatccatgtgttgagcttgcaaagctattctcaacagcagttgactttccaaaaaccg |
11631032 |
T |
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