View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20741_low_4 (Length: 245)
Name: NF20741_low_4
Description: NF20741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20741_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 11683047 - 11682818
Alignment:
| Q |
1 |
acttcatggaaaagcctgacaaaaccacctacaaatcaaagaatgtaataggaaaactttttagggaaattcaaggtatttcaacaaatgatggttctat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
11683047 |
acttcatggaaaagcctgacaaaaccacctacaaatcaaagaatgtaataggaaaactttttagggaaattcaaggtatttcaacaaatgacggttctat |
11682948 |
T |
|
| Q |
101 |
tacatccttcacacttgaagtggctaaggagtcatatgatccagatatggaattcgtgggctttatggattatgccgacgatgctttctatcacaaaacc |
200 |
Q |
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||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11682947 |
tacatccttcacacttgaagtggctaaagagtcacatgatccagatatggaattcgtgggctttatggattatgccgacgatgctttctatcacaaaacc |
11682848 |
T |
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| Q |
201 |
aattatgactacaagttgggaaatctgatg |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
11682847 |
aattatgactacaagttgggaaatctgatg |
11682818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 11675560 - 11675331
Alignment:
| Q |
1 |
acttcatggaaaagcctgacaaaaccacctacaaatcaaagaatgtaataggaaaactttttagggaaattcaaggtatttcaacaaatgatggttctat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||| | |
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| T |
11675560 |
acttcatggaaaagcctgacaaaaccacctacaaatcaaagaatgtaataggaaaactttttagggaaattcaaggtatttcaactgagggtggttctct |
11675461 |
T |
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| Q |
101 |
tacatccttcacacttgaagtggctaaggagtcatatgatccagatatggaattcgtgggctttatggattatgccgacgatgctttctatcacaaaacc |
200 |
Q |
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| T |
11675460 |
tacatcctttacacttgaagtggctaaggagtcatatgattcggatatggaattcgagggctttatggattatgtcgacgatgccttctatcacaaaacc |
11675361 |
T |
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| Q |
201 |
aattatgactacaagttgggaaatctgatg |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
11675360 |
aattatgactacaagttgggaaatctgatg |
11675331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 3 - 230
Target Start/End: Original strand, 11631083 - 11631310
Alignment:
| Q |
3 |
ttcatggaaaagcctgacaaaaccacctacaaatcaaagaatgtaataggaaaactttttagggaaattcaaggtatttcaacaaatgatggttctatta |
102 |
Q |
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|||||||| |||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||| |
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| T |
11631083 |
ttcatggagaagcctgacaaacctatctacaaatcaaagaatgtaataggaaaactttttagggaaattcaaggtatttcaacaaaggacggctctatta |
11631182 |
T |
|
| Q |
103 |
catccttcacacttgaagtggctaaggagtcatatgatccagatatggaattcgtgggctttatggattatgccgacgatgctttctatcacaaaaccaa |
202 |
Q |
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|||| |||||| | ||||||||||| ||||| |||||| | || |||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
11631183 |
catctttcacattggaagtggctaaagagtcctatgattccgacatggaattcgagggctttatggattatgttgacgatgcattctatcacaaaaccaa |
11631282 |
T |
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| Q |
203 |
ttatgactacaagttgggaaatctgatg |
230 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
11631283 |
ttatgactacaagttgggaaatctgatg |
11631310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 3 - 230
Target Start/End: Original strand, 11639845 - 11640072
Alignment:
| Q |
3 |
ttcatggaaaagcctgacaaaaccacctacaaatcaaagaatgtaataggaaaactttttagggaaattcaaggtatttcaacaaatgatggttctatta |
102 |
Q |
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|
|||||||| ||| |||||||||| || ||||||||| | ||||||||||||||||| ||||||||||||||||| ||||||||||| || || || |||| |
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| T |
11639845 |
ttcatggagaaggctgacaaaacaacatacaaatcagataatgtaataggaaaactgtttagggaaattcaaggaatttcaacaaaggacggctccatta |
11639944 |
T |
|
| Q |
103 |
catccttcacacttgaagtggctaaggagtcatatgatccagatatggaattcgtgggctttatggattatgccgacgatgctttctatcacaaaaccaa |
202 |
Q |
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||||||||||||| ||||||||||| ||||||||||||| || |||||| | | || ||||||||||||| ||| ||||| ||||| ||||| |||| |
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| T |
11639945 |
catccttcacactggaagtggctaaaaagtcatatgatcccgacatggaagttgatggatttatggattatgtcgatgatgccttctactacaaatccaa |
11640044 |
T |
|
| Q |
203 |
ttatgactacaagttgggaaatctgatg |
230 |
Q |
| |
|
|||||| | |||||||||||||||||| |
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| T |
11640045 |
ttatgatgagaagttgggaaatctgatg |
11640072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 11683144 - 11683060
Alignment:
| Q |
1 |
acttcatggaaaagcctgacaaaaccacctacaaatcaaagaatgtaataggaaaactttttagggaaattcaaggtatttcaac |
85 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11683144 |
acttcatggaaaagcctgacaaaaccacctacaaatcaaagaatgtaataggaaaactttttagggaaattcaaggtatttcaac |
11683060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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