View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20742_high_3 (Length: 364)

Name: NF20742_high_3
Description: NF20742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20742_high_3
NF20742_high_3
[»] chr7 (8 HSPs)
chr7 (83-272)||(17503936-17504125)
chr7 (83-272)||(17549089-17549278)
chr7 (148-273)||(45164935-45165060)
chr7 (84-168)||(27218603-27218687)
chr7 (83-273)||(29557784-29557974)
chr7 (90-273)||(6335780-6335963)
chr7 (84-122)||(41805285-41805323)
chr7 (84-144)||(23054476-23054536)
[»] chr6 (12 HSPs)
chr6 (83-273)||(7956048-7956237)
chr6 (83-271)||(18588923-18589111)
chr6 (84-164)||(19350519-19350599)
chr6 (85-168)||(14843618-14843701)
chr6 (84-164)||(29976493-29976573)
chr6 (289-338)||(12673430-12673479)
chr6 (87-168)||(32186261-32186342)
chr6 (185-273)||(502908-502996)
chr6 (84-144)||(34180499-34180559)
chr6 (110-217)||(11060294-11060401)
chr6 (84-158)||(10919955-10920029)
chr6 (83-168)||(34434834-34434919)
[»] chr2 (8 HSPs)
chr2 (83-272)||(44028597-44028786)
chr2 (11-81)||(19172399-19172469)
chr2 (148-221)||(2207250-2207323)
chr2 (290-338)||(44028524-44028572)
chr2 (148-262)||(13416310-13416424)
chr2 (237-274)||(6787748-6787785)
chr2 (110-207)||(11028471-11028568)
chr2 (83-180)||(26146789-26146886)
[»] chr3 (14 HSPs)
chr3 (84-228)||(31675506-31675650)
chr3 (84-228)||(31920772-31920916)
chr3 (84-159)||(9510327-9510402)
chr3 (84-159)||(9518302-9518377)
chr3 (84-161)||(19875818-19875895)
chr3 (83-162)||(18381632-18381711)
chr3 (110-219)||(23819165-23819274)
chr3 (83-180)||(52250594-52250690)
chr3 (84-156)||(25024337-25024409)
chr3 (84-228)||(55367185-55367328)
chr3 (115-225)||(40513148-40513258)
chr3 (115-220)||(30166773-30166878)
chr3 (296-336)||(11757816-11757856)
chr3 (140-180)||(14091671-14091711)
[»] chr4 (5 HSPs)
chr4 (148-272)||(40688705-40688829)
chr4 (83-331)||(7099056-7099302)
chr4 (152-273)||(19162553-19162674)
chr4 (134-210)||(53100416-53100492)
chr4 (115-220)||(7662737-7662842)
[»] chr8 (9 HSPs)
chr8 (115-273)||(7452958-7453116)
chr8 (84-228)||(12341142-12341286)
chr8 (83-171)||(12332422-12332510)
chr8 (84-156)||(36025096-36025168)
chr8 (85-171)||(29721388-29721474)
chr8 (110-180)||(17659432-17659502)
chr8 (83-156)||(8902401-8902474)
chr8 (110-219)||(36157754-36157863)
chr8 (83-156)||(36492955-36493028)
[»] chr5 (5 HSPs)
chr5 (84-168)||(476788-476872)
chr5 (148-271)||(36256417-36256538)
chr5 (296-338)||(22174305-22174347)
chr5 (110-217)||(7000219-7000326)
chr5 (294-338)||(1821254-1821298)
[»] chr1 (7 HSPs)
chr1 (84-228)||(1248007-1248151)
chr1 (84-168)||(3544582-3544666)
chr1 (85-162)||(19014471-19014548)
chr1 (134-210)||(50817391-50817467)
chr1 (110-219)||(28097396-28097505)
chr1 (84-164)||(28358465-28358545)
chr1 (115-167)||(43943960-43944012)
[»] scaffold0043 (1 HSPs)
scaffold0043 (85-168)||(34090-34173)
[»] scaffold0048 (1 HSPs)
scaffold0048 (84-122)||(63826-63864)
[»] scaffold0002 (1 HSPs)
scaffold0002 (115-221)||(327563-327669)
[»] scaffold1809 (1 HSPs)
scaffold1809 (289-338)||(1111-1160)
[»] scaffold0418 (1 HSPs)
scaffold0418 (115-220)||(8210-8315)
[»] scaffold0533 (1 HSPs)
scaffold0533 (132-168)||(567-603)


Alignment Details
Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 83 - 272
Target Start/End: Complemental strand, 17504125 - 17503936
Alignment:
Q  83 tcctcctcaccatatctcgccaccaacactcgataccaaagaccacctctatcaactaacatacgccaacaccacttacccaacaacgcctcattaaaaa 182  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||| ||||||||    
T  17504125 tcctcctcaccgtatctcgccaccaacactcgataccaaagaccatctctatcaactaacatatgccaacaccacttacctaacaacgcctaattaaaaa 17504026  T
Q  183 cattcaactgtctaacccctaaaccaccatactcctttcgtaaacagatagtcctccaatccacccaagatatttttctatgatcctcac 272  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  17504025 cattcaactgtctaacgcctaaaccaccatactcctttcgtaaacagatagtcctccaacccacccaagatatttttctatgatcctcac 17503936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 83 - 272
Target Start/End: Original strand, 17549089 - 17549278
Alignment:
Q  83 tcctcctcaccatatctcgccaccaacactcgataccaaagaccacctctatcaactaacatacgccaacaccacttacccaacaacgcctcattaaaaa 182  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||| ||||||||    
T  17549089 tcctcctcaccgtatctcgccaccaacactcgataccaaagaccatctctatcaactaacatatgccaacaccacttacctaacaacgcctaattaaaaa 17549188  T
Q  183 cattcaactgtctaacccctaaaccaccatactcctttcgtaaacagatagtcctccaatccacccaagatatttttctatgatcctcac 272  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  17549189 cattcaactgtctaacgcctaaaccaccatactcctttcgtaaacagatagtcctccaacccacccaagatatttttctatgatcctcac 17549278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 148 - 273
Target Start/End: Complemental strand, 45165060 - 45164935
Alignment:
Q  148 ccaacaccacttacccaacaacgcctcattaaaaacattcaactgtctaacccctaaaccaccatactcctttcgtaaacagatagtcctccaatccacc 247  Q
    |||||||||||| || |||||||||||||||||  |  ||||| | ||||| ||||||||||||||||||||||  | ||| |   ||  |||| |||||    
T  45165060 ccaacaccacttccctaacaacgcctcattaaactccctcaaccgcctaactcctaaaccaccatactcctttctcatacaaactctctgccaacccacc 45164961  T
Q  248 caagatatttttctatgatcctcact 273  Q
    ||||||||||||||||||||||||||    
T  45164960 caagatatttttctatgatcctcact 45164935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 84 - 168
Target Start/End: Complemental strand, 27218687 - 27218603
Alignment:
Q  84 cctcctcaccatatctcgccaccaacactcgataccaaagaccacctctatcaactaacatacgccaacaccacttacccaacaa 168  Q
    |||||||||||||||||||||||||||| | ||||||||  ||||||||||| |  ||||  ||||||||||| ||||| |||||    
T  27218687 cctcctcaccatatctcgccaccaacaccctataccaaaatccacctctatctatcaacaaccgccaacaccatttacctaacaa 27218603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 83 - 273
Target Start/End: Original strand, 29557784 - 29557974
Alignment:
Q  83 tcctcctcaccatatctcgccaccaacactcgataccaaagaccacctctatcaactaacatacgccaacaccacttacccaacaacgcctcattaaaaa 182  Q
    ||||||||||||||||| || |||| |||||  ||||  | ||| || ||||| ||||| |  | ||| |||||||| |||||||||||||| |||||      
T  29557784 tcctcctcaccatatctagctaccatcactctttaccgcaaacccccactatccactaaaagtctccatcaccactttcccaacaacgcctcgttaaatt 29557883  T
Q  183 cattcaactgtctaacccctaaaccaccatactcctttcgtaaacagatagtcctccaatccacccaagatatttttctatgatcctcact 273  Q
    |  |||| || |||||||| || ||||||||||| || |  | ||| | || |||||| || |||||||| ||||| ||||||||||||||    
T  29557884 ccctcaattgcctaaccccaaacccaccatactcgttcctcatacaaacagacctccattctacccaagagattttcctatgatcctcact 29557974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 90 - 273
Target Start/End: Complemental strand, 6335963 - 6335780
Alignment:
Q  90 caccatatctcgccaccaacactcgataccaaagaccacctctatcaactaacatacgccaacaccacttacccaacaacgcctcattaaaaacattcaa 189  Q
    ||||||| || || |||||||| |||||||| |  || |||||||| ||||| |  |  |||||||| ||||||||||| |||||||| ||  |   |||    
T  6335963 caccatacctagcaaccaacacccgataccataaccctcctctatctactaataatcttcaacaccatttacccaacaatgcctcattgaactcccgcaa 6335864  T
Q  190 ctgtctaacccctaaaccaccatactcctttcgtaaacagatagtcctccaatccacccaagatatttttctatgatcctcact 273  Q
    ||| ||||| ||||| || || |||||||||   ||||| | || ||||||| | |||||||| ||||| ||||| ||||||||    
T  6335863 ctgcctaactcctaaccccccgtactcctttttcaaacaaacagacctccaacctacccaagaaattttcctatgttcctcact 6335780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 122
Target Start/End: Complemental strand, 41805323 - 41805285
Alignment:
Q  84 cctcctcaccatatctcgccaccaacactcgataccaaa 122  Q
    |||||||||||||||||||||||||||| | ||||||||    
T  41805323 cctcctcaccatatctcgccaccaacaccctataccaaa 41805285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 23054536 - 23054476
Alignment:
Q  84 cctcctcaccatatctcgccaccaacactcgataccaaagaccacctctatcaactaacat 144  Q
    |||||||||||| ||| ||| ||||||| | ||||||||  || |||||||||||||||||    
T  23054536 cctcctcaccatgtctagccgccaacaccctataccaaaaccctcctctatcaactaacat 23054476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 83 - 273
Target Start/End: Complemental strand, 7956237 - 7956048
Alignment:
Q  83 tcctcctcaccatatctcgccaccaacactcgataccaaagaccacctctatcaactaacatacgccaacaccacttacccaacaacgcctcattaaaaa 182  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||  ||||||||||| |    
T  7956237 tcctcctcaccatatctagccaccaacactcgataccaaagaccatctctatcaactaacatacgccaacatcacttacccaacagagcctcattaaaca 7956138  T
Q  183 cattcaactgtctaacccctaaaccaccatactcctttcgtaaacagatagtcctccaatccacccaagatatttttctatgatcctcact 273  Q
     | ||||||||||||| |||||||| ||||||||||||||  |||| |||||||||||  | |||||| ||||||| ||||||||||||||    
T  7956137 tactcaactgtctaactcctaaacctccatactcctttcg-caacaaatagtcctccatcctacccaatatattttcctatgatcctcact 7956048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 83 - 271
Target Start/End: Original strand, 18588923 - 18589111
Alignment:
Q  83 tcctcctcaccatatctcgccaccaacactcgataccaaagaccacctctatcaactaacatacgccaacaccacttacccaacaacgcctcattaaaaa 182  Q
    ||||||||||||||||| |||||||||||||||||||| |  ||  ||||||||||||||| ||||||||||||||||||||| |  ||||||||||| |    
T  18588923 tcctcctcaccatatctagccaccaacactcgataccataacccgtctctatcaactaacaaacgccaacaccacttacccaatagagcctcattaaaca 18589022  T
Q  183 cattcaactgtctaacccctaaaccaccatactcctttcgtaaacagatagtcctccaatccacccaagatatttttctatgatcctca 271  Q
    |||||| ||||||||| |||||||| || |||||||| || | ||| | |  | || | || |||||||| ||||||||||||||||||    
T  18589023 cattcatctgtctaacacctaaacctccgtactccttccgcagacaaacatacgtctattctacccaagaaatttttctatgatcctca 18589111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 84 - 164
Target Start/End: Original strand, 19350519 - 19350599
Alignment:
Q  84 cctcctcaccatatctcgccaccaacactcgataccaaagaccacctctatcaactaacatacgccaacaccacttaccca 164  Q
    |||||||||||||||||||||||||||| | ||||||||  ||||||||||| |  ||||  ||||||||||| |||||||    
T  19350519 cctcctcaccatatctcgccaccaacaccctataccaaaacccacctctatctatcaacaaccgccaacaccatttaccca 19350599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 168
Target Start/End: Complemental strand, 14843701 - 14843618
Alignment:
Q  85 ctcctcaccatatctcgccaccaacactcgataccaaagaccacctctatcaactaacatacgccaacaccacttacccaacaa 168  Q
    |||||||||||||||||| |||| ||| | |||||||| |||| ||||||| || ||||| ||||||||||| ||||| |||||    
T  14843701 ctcctcaccatatctcgctaccagcaccctataccaaaaaccatctctatctaccaacattcgccaacaccatttacctaacaa 14843618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 84 - 164
Target Start/End: Complemental strand, 29976573 - 29976493
Alignment:
Q  84 cctcctcaccatatctcgccaccaacactcgataccaaagaccacctctatcaactaacatacgccaacaccacttaccca 164  Q
    |||||||||||||||||||||||||||| | ||||||||  ||||||||||| |  ||||  ||||||| ||| |||||||    
T  29976573 cctcctcaccatatctcgccaccaacaccctataccaaaacccacctctatctatcaacaaccgccaacgccatttaccca 29976493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 289 - 338
Target Start/End: Complemental strand, 12673479 - 12673430
Alignment:
Q  289 tttaatcaaaagagattctatggaagagattatacctgatggatccttga 338  Q
    |||| ||||||||||||||||||||||||||||||  |||||||| ||||    
T  12673479 tttattcaaaagagattctatggaagagattatactagatggatcgttga 12673430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 168
Target Start/End: Original strand, 32186261 - 32186342
Alignment:
Q  87 cctcaccatatctcgccaccaacactcgataccaaagaccacctctatcaactaacatacgccaacaccacttacccaacaa 168  Q
    |||||| |||||||||||||||||| | ||||||||  ||||||||||| || ||||   |||||||||| ||| |||||||    
T  32186261 cctcactatatctcgccaccaacaccctataccaaaacccacctctatccaccaacaactgccaacaccatttatccaacaa 32186342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 273
Target Start/End: Complemental strand, 502996 - 502908
Alignment:
Q  185 ttcaactgtctaacccctaaaccaccatactcctttcgtaaacagatagtcctccaatccacccaagatatttttctatgatcctcact 273  Q
    |||||||||||||||||||| || ||| |||||||| ||| ||| | ||  |||||| | | |||||| ||||| ||||||||||||||    
T  502996 ttcaactgtctaacccctaaccctccaaactccttttgtagacaaacagagctccaacctatccaagacattttcctatgatcctcact 502908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 144
Target Start/End: Original strand, 34180499 - 34180559
Alignment:
Q  84 cctcctcaccatatctcgccaccaacactcgataccaaagaccacctctatcaactaacat 144  Q
    |||||||||||||||| ||  ||||||| | |||| ||||||| |||||||||||||||||    
T  34180499 cctcctcaccatatctagcagccaacaccctatacgaaagacctcctctatcaactaacat 34180559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 110 - 217
Target Start/End: Complemental strand, 11060401 - 11060294
Alignment:
Q  110 actcgataccaaagaccacctctatcaactaacatacgccaacaccacttacccaacaacgcctcattaaaaacattcaactgtctaacccctaaaccac 209  Q
    |||||||||||||  ||||  |||||||||| ||| | ||||||||||||||| |||||  || |||||||  | |||||| |||| ||||| ||||| |    
T  11060401 actcgataccaaaagccactcctatcaactagcatcctccaacaccacttacctaacaaaaccacattaaattctttcaaccgtctcacccccaaacctc 11060302  T
Q  210 catactcc 217  Q
    || |||||    
T  11060301 caaactcc 11060294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 158
Target Start/End: Complemental strand, 10920029 - 10919955
Alignment:
Q  84 cctcctcaccatatctcgccaccaacactcgataccaaagaccacctctatcaactaacatacgccaacaccact 158  Q
    ||||||||||||| || || |||||||| | ||||||||  || ||||||||||| ||||| | |||||||||||    
T  10920029 cctcctcaccatacctagcaaccaacaccctataccaaaacccccctctatcaaccaacatcctccaacaccact 10919955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 168
Target Start/End: Original strand, 34434834 - 34434919
Alignment:
Q  83 tcctcctcaccatatctcgccaccaacactcgataccaaagaccacctctatcaactaacatacgccaacaccacttacccaacaa 168  Q
    |||||||||||||||||||||||||| || | |||||| | || ||  || || || ||||| ||||||||||| ||||| |||||    
T  34434834 tcctcctcaccatatctcgccaccaaaaccctataccatatactactcctctctaccaacatccgccaacaccatttacctaacaa 34434919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 83 - 272
Target Start/End: Complemental strand, 44028786 - 44028597
Alignment:
Q  83 tcctcctcaccatatctcgccaccaacactcgataccaaagaccacctctatcaactaacatacgccaacaccacttacccaacaacgcctcattaaaaa 182  Q
    ||||||||||||||||||||| | ||||| || ||||| |  ||| ||||||| |||||||| | ||| ||||||||||| | |||||||||||||||      
T  44028786 tcctcctcaccatatctcgccgcaaacacacggtaccacaacccatctctatccactaacatcctccagcaccacttacctagcaacgcctcattaaact 44028687  T
Q  183 cattcaactgtctaacccctaaaccaccatactcctttcgtaaacagatagtcctccaatccacccaagatatttttctatgatcctcac 272  Q
    | |||||||||||||| || ||||| |||||||||||||||||||| | |  ||||||  | ||||||||||||||||||| ||||||||    
T  44028686 ccttcaactgtctaacacccaaacctccatactcctttcgtaaacacacatacctccatcctacccaagatatttttctataatcctcac 44028597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 19172469 - 19172399
Alignment:
Q  11 cacagacccttctcaaatcctcaaccaagactggcataactccttagaaaagcctcttctttggatctctg 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19172469 cacagacccttctcaaatcctcaaccaagactggcataactccttagaaaagcctcttctttggatctctg 19172399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 221
Target Start/End: Complemental strand, 2207323 - 2207250
Alignment:
Q  148 ccaacaccacttacccaacaacgcctcattaaaaacattcaactgtctaacccctaaaccaccatactcctttc 221  Q
    |||||||||||| || |||||||||||||||||  |  ||||| ||||||| ||||| ||||||||||||||||    
T  2207323 ccaacaccacttccctaacaacgcctcattaaactccctcaaccgtctaactcctaacccaccatactcctttc 2207250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 338
Target Start/End: Complemental strand, 44028572 - 44028524
Alignment:
Q  290 ttaatcaaaagagattctatggaagagattatacctgatggatccttga 338  Q
    ||||||||||||||||| || ||||||||||||| ||||||| ||||||    
T  44028572 ttaatcaaaagagattcaatagaagagattatacatgatggagccttga 44028524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 262
Target Start/End: Original strand, 13416310 - 13416424
Alignment:
Q  148 ccaacaccacttacccaacaacgcctcattaaaaacattcaactgtctaacccctaaaccaccatactcctttcgtaaacagatagtcctccaatccacc 247  Q
    |||||||||||| || |||||||||||||||||  |  ||||| | ||||| ||||| |||||||||| ||||| || ||| | | ||  |||   ||||    
T  13416310 ccaacaccacttccctaacaacgcctcattaaactccctcaaccgcctaactcctaatccaccatacttctttcttacacacacactctgccagctcacc 13416409  T
Q  248 caagatatttttcta 262  Q
    |||||||||||||||    
T  13416410 caagatatttttcta 13416424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 274
Target Start/End: Original strand, 6787748 - 6787785
Alignment:
Q  237 tccaatccacccaagatatttttctatgatcctcactt 274  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  6787748 tccaatccacacaagatattttcctatgatcctcactt 6787785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 207
Target Start/End: Original strand, 11028471 - 11028568
Alignment:
Q  110 actcgataccaaagaccacctctatcaactaacatacgccaacaccacttacccaacaacgcctcattaaaaacattcaactgtctaacccctaaacc 207  Q
    ||||| ||||| | |||||  |||||||| | ||| | |||||||||||| || ||||| |||| ||||||  | ||||||||||| |||||||||||    
T  11028471 actcggtaccacaaaccactcctatcaacaagcatcctccaacaccactttcctaacaaagcctgattaaactccttcaactgtctcacccctaaacc 11028568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 180
Target Start/End: Original strand, 26146789 - 26146886
Alignment:
Q  83 tcctcctcaccatatctcgccaccaacactcgataccaaagaccacctctatcaactaacatacgccaacaccacttacccaacaacgcctcattaaa 180  Q
    |||||||| |||||||||||||||||||| | |||||| | || ||  || || || |||| |||||||||||| || || ||||||||  |||||||    
T  26146789 tcctcctcgccatatctcgccaccaacaccctataccacaaactactcctctccaccaacaaacgccaacaccatttgcctaacaacgcaacattaaa 26146886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 84 - 228
Target Start/End: Original strand, 31675506 - 31675650
Alignment:
Q  84 cctcctcaccatatctcgccaccaacactcgataccaaagaccacctctatcaactaacatacgccaacaccacttacccaacaacgcctcattaaaaac 183  Q
    ||||||||||||||||| |||||| ||| | |||||||| |||||||||||| || ||||| ||||||||||| ||||| ||||| || |  |||||  |    
T  31675506 cctcctcaccatatctcaccaccagcaccctataccaaaaaccacctctatccaccaacattcgccaacaccatttacctaacaaagcatggttaaactc 31675605  T
Q  184 attcaactgtctaacccctaaaccaccatactcctttcgtaaaca 228  Q
      |||||||||| |||||||| || ||||||||||||||||||||    
T  31675606 cctcaactgtctcacccctaaccctccatactcctttcgtaaaca 31675650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 84 - 228
Target Start/End: Complemental strand, 31920916 - 31920772
Alignment:
Q  84 cctcctcaccatatctcgccaccaacactcgataccaaagaccacctctatcaactaacatacgccaacaccacttacccaacaacgcctcattaaaaac 183  Q
    ||||||||||||||||| |||||| ||| | |||||||| |||||||||||| || ||||| ||||||||||| ||||| ||||| || |  |||||  |    
T  31920916 cctcctcaccatatctcaccaccagcaccctataccaaaaaccacctctatccaccaacattcgccaacaccatttacctaacaaagcatggttaaactc 31920817  T
Q  184 attcaactgtctaacccctaaaccaccatactcctttcgtaaaca 228  Q
      |||||||||| || ||||| || ||||||||||||||||||||    
T  31920816 cctcaactgtctcactcctaaccctccatactcctttcgtaaaca 31920772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 84 - 159
Target Start/End: Original strand, 9510327 - 9510402
Alignment:
Q  84 cctcctcaccatatctcgccaccaacactcgataccaaagaccacctctatcaactaacatacgccaacaccactt 159  Q
    ||||||||||||| || ||  ||||||| |||||||||| ||||||||||| ||||||||| | ||||||||||||    
T  9510327 cctcctcaccataccttgcagccaacacccgataccaaaaaccacctctattaactaacatcctccaacaccactt 9510402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 84 - 159
Target Start/End: Original strand, 9518302 - 9518377
Alignment:
Q  84 cctcctcaccatatctcgccaccaacactcgataccaaagaccacctctatcaactaacatacgccaacaccactt 159  Q
    ||||||||||||| || ||  ||||||| |||||||||| ||||||||||| ||||||||| | ||||||||||||    
T  9518302 cctcctcaccataccttgcagccaacacccgataccaaaaaccacctctattaactaacatcctccaacaccactt 9518377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 161
Target Start/End: Original strand, 19875818 - 19875895
Alignment:
Q  84 cctcctcaccatatctcgccaccaacactcgataccaaagaccacctctatcaactaacatacgccaacaccacttac 161  Q
    |||||||||||||||||||||||||||| | ||||||||  ||||||||||| |  ||||  ||||||||||| ||||    
T  19875818 cctcctcaccatatctcgccaccaacaccctataccaaaacccacctctatctatcaacaaccgccaacaccatttac 19875895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 162
Target Start/End: Original strand, 18381632 - 18381711
Alignment:
Q  83 tcctcctcaccatatctcgccaccaacactcgataccaaagaccacctctatcaactaacatacgccaacaccacttacc 162  Q
    ||||| |||||||||||||||||||| || | |||||| |  || ||||||||||| ||||| | |||||||||||||||    
T  18381632 tcctcgtcaccatatctcgccaccaaaacccaataccataaccctcctctatcaaccaacattctccaacaccacttacc 18381711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 110 - 219
Target Start/End: Original strand, 23819165 - 23819274
Alignment:
Q  110 actcgataccaaagaccacctctatcaactaacatacgccaacaccacttacccaacaacgcctcattaaaaacattcaactgtctaacccctaaaccac 209  Q
    ||||||||||||| |||||  |||||||| | ||| | |||||||||||| || ||||| |||| ||||||  | |||||||||||  |||| ||||| |    
T  23819165 actcgataccaaaaaccactcctatcaacaagcatcctccaacaccactttcctaacaaagcctgattaaattccttcaactgtctcgcccccaaacctc 23819264  T
Q  210 catactcctt 219  Q
    || |||||||    
T  23819265 caaactcctt 23819274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 180
Target Start/End: Complemental strand, 52250690 - 52250594
Alignment:
Q  83 tcctcctcaccatatctcgccaccaacactcgataccaaagaccacctctatcaactaacatacgccaacaccacttacccaacaacgcctcattaaa 180  Q
    ||||||||||||||||||||||||||||| | |||||| | || ||| || || || |||| |||||||||||| || || ||||||||  |||||||    
T  52250690 tcctcctcaccatatctcgccaccaacaccctataccataaactacc-ctctccaccaacaaacgccaacaccatttccctaacaacgcaacattaaa 52250594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 156
Target Start/End: Complemental strand, 25024409 - 25024337
Alignment:
Q  84 cctcctcaccatatctcgccaccaacactcgataccaaagaccacctctatcaactaacatacgccaacacca 156  Q
    |||||||||||||||| ||  ||||||| | |||||||| |||| ||||||| |||||||| | |||||||||    
T  25024409 cctcctcaccatatctagcttccaacaccctataccaaaaaccatctctatccactaacatcctccaacacca 25024337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 228
Target Start/End: Original strand, 55367185 - 55367328
Alignment:
Q  84 cctcctcaccatatctcgccaccaacactcgataccaaagaccacctctatcaactaacatacgccaacaccacttacccaacaacgcctcattaaaaac 183  Q
    ||||||||||||||||||| | ||| ||   |||||| |  |||||||||||||||||||| | ||||||||| || || ||||||||   ||||||  |    
T  55367185 cctcctcaccatatctcgctaacaaaaccttataccacaacccacctctatcaactaacatcctccaacaccattttcctaacaacgcaagattaaattc 55367284  T
Q  184 attcaactgtctaacccctaaaccaccatactcctttcgtaaaca 228  Q
     |||||||  || |||||  |||| ||||||||||||||| ||||    
T  55367285 cttcaacttcctcacccc-caacccccatactcctttcgtgaaca 55367328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 225
Target Start/End: Complemental strand, 40513258 - 40513148
Alignment:
Q  115 ataccaaagaccacctctatcaactaacatacgccaacaccacttacccaacaacgcctcattaaaaacattcaactgtctaacccctaaaccaccatac 214  Q
    |||||| | |||||||||||| || ||||| ||||||||||| ||||| ||||| ||   ||||||| | | |||||  || ||||| ||||| ||||||    
T  40513258 ataccataaaccacctctatccaccaacatccgccaacaccatttacctaacaaagcactattaaaatcctgcaacttcctcacccccaaacccccatac 40513159  T
Q  215 tcctttcgtaa 225  Q
    ||||| |||||    
T  40513158 tccttacgtaa 40513148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 220
Target Start/End: Complemental strand, 30166878 - 30166773
Alignment:
Q  115 ataccaaagaccacctctatcaactaacatacgccaacaccacttacccaacaacgcctcattaaaaacattcaactgtctaacccctaaaccaccatac 214  Q
    |||||| | ||||||||| ||||| ||||| ||||||||||| ||||| ||||| ||   ||||||  | |||||||| || ||||| ||||| |||| |    
T  30166878 ataccacaaaccacctctgtcaaccaacatccgccaacaccatttacctaacaaagcactattaaattccttcaactgcctcacccccaaacctccattc 30166779  T
Q  215 tccttt 220  Q
    ||||||    
T  30166778 tccttt 30166773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 336
Target Start/End: Complemental strand, 11757856 - 11757816
Alignment:
Q  296 aaaagagattctatggaagagattatacctgatggatcctt 336  Q
    ||||||||||||| ||||||||||||||| |||||| ||||    
T  11757856 aaaagagattctagggaagagattataccagatggagcctt 11757816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 180
Target Start/End: Complemental strand, 14091711 - 14091671
Alignment:
Q  140 aacatacgccaacaccacttacccaacaacgcctcattaaa 180  Q
    |||||||||||||||||||| |||||||||||  |||||||    
T  14091711 aacatacgccaacaccactttcccaacaacgctacattaaa 14091671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 148 - 272
Target Start/End: Original strand, 40688705 - 40688829
Alignment:
Q  148 ccaacaccacttacccaacaacgcctcattaaaaacattcaactgtctaacccctaaaccaccatactcctttcgtaaacagatagtcctccaatccacc 247  Q
    |||||||||||| || |||||||||||||||||  |  ||||||| ||||| ||||||||||||||||||||||  | ||| ||  ||  |||| |||||    
T  40688705 ccaacaccacttccctaacaacgcctcattaaactccctcaactgcctaactcctaaaccaccatactcctttctcatacaaattctctgccaacccacc 40688804  T
Q  248 caagatatttttctatgatcctcac 272  Q
    |||||||||||||||||||||||||    
T  40688805 caagatatttttctatgatcctcac 40688829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 83 - 331
Target Start/End: Original strand, 7099056 - 7099302
Alignment:
Q  83 tcctcctcaccatatctcgccaccaacactcgataccaaagaccacctctatcaactaacatacgccaacaccacttacccaacaacgcctcattaaaaa 182  Q
    ||||||||||||||||| || | ||| || |||||||| | |||  ||| ||||||||||| || ||||||| |||| ||||||||||||||||||||      
T  7099056 tcctcctcaccatatctagctatcaaaacccgataccacaaaccctctcgatcaactaacaaactccaacacaactttcccaacaacgcctcattaaact 7099155  T
Q  183 cattcaactgtctaacccctaaaccaccatactcctttcgtaaacagatagtcctccaatccacccaagatatttttctatgatcctcacttnnnnnnnn 282  Q
    |  ||||||| ||||| || ||||| |||||||||||| | | ||| |  | ||||||  | |||||||| | ||||||||||||||||| |            
T  7099156 ccctcaactgcctaacacccaaacctccatactcctttagcataca-aacgacctccagcctacccaagaaacttttctatgatcctcac-tccctccta 7099253  T
Q  283 nnnnnntttaatcaaaagagattctatggaagagattatacctgatgga 331  Q
          ||||||||||||||||||||||||||||||||||| |||||||    
T  7099254 aaaaaatttaatcaaaagagattctatggaagagattatacttgatgga 7099302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 152 - 273
Target Start/End: Complemental strand, 19162674 - 19162553
Alignment:
Q  152 caccacttacccaacaacgcctcattaaaaacattcaactgtctaacccctaaaccaccatactcctttcgtaaacagatagtcctccaatccacccaag 251  Q
    |||||||| || |||||||||||||||||  |  ||||| | ||||| ||||||||||||||||||||||  | ||| |   ||  |||| ||||| |||    
T  19162674 caccacttccctaacaacgcctcattaaactccctcaaccgcctaactcctaaaccaccatactcctttctcatacaaactctctgccaacccacctaag 19162575  T
Q  252 atatttttctatgatcctcact 273  Q
    ||||||||||||||||||||||    
T  19162574 atatttttctatgatcctcact 19162553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 134 - 210
Target Start/End: Complemental strand, 53100492 - 53100416
Alignment:
Q  134 tcaactaacatacgccaacaccacttacccaacaacgcctcattaaaaacattcaactgtctaacccctaaaccacc 210  Q
    |||||||||||||||||||||||||| ||||| |||||| |||||||  |  |||| | |||||| |||||||||||    
T  53100492 tcaactaacatacgccaacaccacttccccaataacgccacattaaattccctcaattttctaacgcctaaaccacc 53100416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 220
Target Start/End: Complemental strand, 7662842 - 7662737
Alignment:
Q  115 ataccaaagaccacctctatcaactaacatacgccaacaccacttacccaacaacgcctcattaaaaacattcaactgtctaacccctaaaccaccatac 214  Q
    |||||| | ||||||||| || || ||||| ||||||||||| ||||| ||||| ||   ||||||  | ||||||||||| ||||| ||||| |||| |    
T  7662842 ataccacaaaccacctctgtccaccaacatccgccaacaccatttacctaacaaagcactattaaattccttcaactgtctcacccccaaacctccattc 7662743  T
Q  215 tccttt 220  Q
    ||||||    
T  7662742 tccttt 7662737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 115 - 273
Target Start/End: Original strand, 7452958 - 7453116
Alignment:
Q  115 ataccaaagaccacctctatcaactaacatacgccaacaccacttacccaacaacgcctcattaaaaacattcaactgtctaacccctaaaccaccatac 214  Q
    |||||| | ||||||||| || || ||||| ||||||||||||||||| ||||| ||   ||||||  ||||||||||||| ||||| ||||| ||||||    
T  7452958 ataccacaaaccacctctgtccaccaacatccgccaacaccacttacctaacaaagcactattaaattcattcaactgtctcacccccaaacctccatac 7453057  T
Q  215 tcctttcgtaaacagatagtcctccaatccacccaagatatttttctatgatcctcact 273  Q
    ||||||  | |||| | |||  ||||| | | ||| || ||||||||||||||||||||    
T  7453058 tccttttttgaacaaacagttttccaacctatccaggaaatttttctatgatcctcact 7453116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 84 - 228
Target Start/End: Original strand, 12341142 - 12341286
Alignment:
Q  84 cctcctcaccatatctcgccaccaacactcgataccaaagaccacctctatcaactaacatacgccaacaccacttacccaacaacgcctcattaaaaac 183  Q
    ||||||||||||| ||||||||||  || | | |||| |  || |||||||| |||||||| | |||||||||||| || ||||| |||  ||||||  |    
T  12341142 cctcctcaccatacctcgccaccagtaccctaaaccacaaccctcctctatccactaacatcctccaacaccactttcctaacaaagccatattaaattc 12341241  T
Q  184 attcaactgtctaacccctaaaccaccatactcctttcgtaaaca 228  Q
     ||||||||||| ||||| ||||| |||| |||||||||||||||    
T  12341242 cttcaactgtctcacccccaaacccccattctcctttcgtaaaca 12341286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 83 - 171
Target Start/End: Original strand, 12332422 - 12332510
Alignment:
Q  83 tcctcctcaccatatctcgccaccaacactcgataccaaagaccacctctatcaactaacatacgccaacaccacttacccaacaacgc 171  Q
    ||||||||||||||||||||||||||||| | ||||||||||| ||  || || ||||| | |||||||||||| || || ||||||||    
T  12332422 tcctcctcaccatatctcgccaccaacaccctataccaaagactacacctctccactaataaacgccaacaccatttgcctaacaacgc 12332510  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 84 - 156
Target Start/End: Original strand, 36025096 - 36025168
Alignment:
Q  84 cctcctcaccatatctcgccaccaacactcgataccaaagaccacctctatcaactaacatacgccaacacca 156  Q
    ||||||||||||||||||||||||| |||| |||||| |  || |||||||| || ||||| |||||||||||    
T  36025096 cctcctcaccatatctcgccaccaaaactctataccataaccctcctctatccaccaacatccgccaacacca 36025168  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 171
Target Start/End: Complemental strand, 29721474 - 29721388
Alignment:
Q  85 ctcctcaccatatctcgccaccaacactcgataccaaagaccacctctatcaactaacatacgccaacaccacttacccaacaacgc 171  Q
    |||||||||||||||||||||||| || | |||||| |  ||||||  |||||||||||| | ||||||||| || || ||||||||    
T  29721474 ctcctcaccatatctcgccaccaaaaccctataccacaacccaccttgatcaactaacatcctccaacaccatttgcctaacaacgc 29721388  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 180
Target Start/End: Original strand, 17659432 - 17659502
Alignment:
Q  110 actcgataccaaagaccacctctatcaactaacatacgccaacaccacttacccaacaacgcctcattaaa 180  Q
    |||||||||||||  ||||  |||||||||| ||| | ||||||||||||||| ||||| ||| |||||||    
T  17659432 actcgataccaaaagccactcctatcaactagcatcctccaacaccacttacctaacaaagccacattaaa 17659502  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 156
Target Start/End: Original strand, 8902401 - 8902474
Alignment:
Q  83 tcctcctcaccatatctcgccaccaacactcgataccaaagaccacctctatcaactaacatacgccaacacca 156  Q
    |||||||||||||| |  ||||| ||||| | |||||| |  ||| |||||||||||||||| |||||||||||    
T  8902401 tcctcctcaccataacgagccactaacaccctataccacaagccagctctatcaactaacatccgccaacacca 8902474  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 219
Target Start/End: Original strand, 36157754 - 36157863
Alignment:
Q  110 actcgataccaaagaccacctctatcaactaacatacgccaacaccacttacccaacaacgcctcattaaaaacattcaactgtctaacccctaaaccac 209  Q
    |||| |||||| | |||||  |||||||| | ||| | |||||||||||| || ||||| |||| ||||||  | ||||||||||| ||||| ||||| |    
T  36157754 actcaataccacaaaccactcctatcaacaagcatcctccaacaccactttcctaacaaagcctgattaaactccttcaactgtctcacccccaaacctc 36157853  T
Q  210 catactcctt 219  Q
    || |||||||    
T  36157854 caaactcctt 36157863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 156
Target Start/End: Original strand, 36492955 - 36493028
Alignment:
Q  83 tcctcctcaccatatctcgccaccaacactcgataccaaagaccacctctatcaactaacatacgccaacacca 156  Q
    |||||||||||||| |||||||||||||| | |||||| | || ||  || ||||| |||| ||||||||||||    
T  36492955 tcctcctcaccatacctcgccaccaacaccctataccataaactactcctctcaaccaacaaacgccaacacca 36493028  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 84 - 168
Target Start/End: Original strand, 476788 - 476872
Alignment:
Q  84 cctcctcaccatatctcgccaccaacactcgataccaaagaccacctctatcaactaacatacgccaacaccacttacccaacaa 168  Q
    ||||||||||||||||||| |||| ||| | |||||||| |||| ||||||| || ||||| ||||||||||| ||||| |||||    
T  476788 cctcctcaccatatctcgctaccagcaccctataccaaaaaccatctctatctaccaacattcgccaacaccatttacctaacaa 476872  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 148 - 271
Target Start/End: Original strand, 36256417 - 36256538
Alignment:
Q  148 ccaacaccacttacccaacaacgcctcattaaaaacattcaactgtctaacccctaaaccaccatactcctttcgtaaacagatagtcctccaatccacc 247  Q
    |||||| ||||| || |||||||||||||||||  |  ||||||| ||||| ||||||||||||||||| ||||  | ||  | | ||  |||| |||||    
T  36256417 ccaacatcacttccctaacaacgcctcattaaactctctcaactgcctaactcctaaaccaccatactcatttctcagac--aaactctgccaacccacc 36256514  T
Q  248 caagatatttttctatgatcctca 271  Q
    |||||||||||||||| |||||||    
T  36256515 caagatatttttctataatcctca 36256538  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 338
Target Start/End: Complemental strand, 22174347 - 22174305
Alignment:
Q  296 aaaagagattctatggaagagattatacctgatggatccttga 338  Q
    ||||||||||| |||||||||||||||||||||||| ||||||    
T  22174347 aaaagagattcaatggaagagattatacctgatggaaccttga 22174305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 110 - 217
Target Start/End: Complemental strand, 7000326 - 7000219
Alignment:
Q  110 actcgataccaaagaccacctctatcaactaacatacgccaacaccacttacccaacaacgcctcattaaaaacattcaactgtctaacccctaaaccac 209  Q
    |||||||||||||  ||||  |||||||||| ||| | ||||||||||||||| ||||| | |  ||||||  | ||||||||||| ||||| ||||| |    
T  7000326 actcgataccaaaagccactcctatcaactagcatcctccaacaccacttacctaacaaaggcaaattaaattctttcaactgtctcacccccaaacctc 7000227  T
Q  210 catactcc 217  Q
    || |||||    
T  7000226 caaactcc 7000219  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 338
Target Start/End: Original strand, 1821254 - 1821298
Alignment:
Q  294 tcaaaagagattctatggaagagattatacctgatggatccttga 338  Q
    ||||||||||||| |||||||||||||||| ||||| | ||||||    
T  1821254 tcaaaagagattcaatggaagagattatacttgatgaaaccttga 1821298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 84 - 228
Target Start/End: Complemental strand, 1248151 - 1248007
Alignment:
Q  84 cctcctcaccatatctcgccaccaacactcgataccaaagaccacctctatcaactaacatacgccaacaccacttacccaacaacgcctcattaaaaac 183  Q
    |||||||||||||||||||||||||||  | |||||||| ||||||| |||| || || |||| ||||||| | ||||| ||||| ||   ||||||  |    
T  1248151 cctcctcaccatatctcgccaccaacagcctataccaaaaaccacctttatccaccaatatacaccaacactatttacctaacaaagcactattaaactc 1248052  T
Q  184 attcaactgtctaacccctaaaccaccatactcctttcgtaaaca 228  Q
      | ||||| || |||||||| || |||||||||||| |||||||    
T  1248051 ccttaactgcctcacccctaaccccccatactccttttgtaaaca 1248007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 84 - 168
Target Start/End: Complemental strand, 3544666 - 3544582
Alignment:
Q  84 cctcctcaccatatctcgccaccaacactcgataccaaagaccacctctatcaactaacatacgccaacaccacttacccaacaa 168  Q
    ||||||||||||||||||| |||| ||| | |||||||| |||| ||||||| || ||||| ||||||||||| ||||| |||||    
T  3544666 cctcctcaccatatctcgctaccagcaccctataccaaaaaccatctctatctaccaacattcgccaacaccatttacctaacaa 3544582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 162
Target Start/End: Complemental strand, 19014548 - 19014471
Alignment:
Q  85 ctcctcaccatatctcgccaccaacactcgataccaaagaccacctctatcaactaacatacgccaacaccacttacc 162  Q
    ||||||||||||||||||||||||||||  ||||||||  |||||||| || || ||||| ||||||| ||| |||||    
T  19014548 ctcctcaccatatctcgccaccaacacttaataccaaaacccacctctgtccaccaacatccgccaactccatttacc 19014471  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 134 - 210
Target Start/End: Complemental strand, 50817467 - 50817391
Alignment:
Q  134 tcaactaacatacgccaacaccacttacccaacaacgcctcattaaaaacattcaactgtctaacccctaaaccacc 210  Q
    |||||||||||||||||||||||||| ||||| |||||| |||||||  |  |||| | |||||| |||||||||||    
T  50817467 tcaactaacatacgccaacaccacttccccaataacgccacattaaattccctcaattttctaacgcctaaaccacc 50817391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 110 - 219
Target Start/End: Complemental strand, 28097505 - 28097396
Alignment:
Q  110 actcgataccaaagaccacctctatcaactaacatacgccaacaccacttacccaacaacgcctcattaaaaacattcaactgtctaacccctaaaccac 209  Q
    ||||||||||| | | |||  |||||||| | ||||| |||||||||||| || ||||| |||| ||||||  | ||||||||||| ||||| ||||| |    
T  28097505 actcgataccacaaatcactactatcaacaagcatactccaacaccactttcctaacaaagcctgattaaactccttcaactgtctcacccccaaacctc 28097406  T
Q  210 catactcctt 219  Q
    || |||||||    
T  28097405 caaactcctt 28097396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 164
Target Start/End: Original strand, 28358465 - 28358545
Alignment:
Q  84 cctcctcaccatatctcgccaccaacactcgataccaaagaccacctctatcaactaacatacgccaacaccacttaccca 164  Q
    |||||||||||||||||||||||||||| |  |||||||  || |||||||| || ||||  | ||||||||| |||||||    
T  28358465 cctcctcaccatatctcgccaccaacaccctgtaccaaaacccgcctctatctaccaacaatctccaacaccatttaccca 28358545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 167
Target Start/End: Complemental strand, 43944012 - 43943960
Alignment:
Q  115 ataccaaagaccacctctatcaactaacatacgccaacaccacttacccaaca 167  Q
    |||||| | |||| |||||||||||||||| | ||||||||||||||||||||    
T  43944012 ataccacaaaccatctctatcaactaacatcctccaacaccacttacccaaca 43943960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 85 - 168
Target Start/End: Complemental strand, 34173 - 34090
Alignment:
Q  85 ctcctcaccatatctcgccaccaacactcgataccaaagaccacctctatcaactaacatacgccaacaccacttacccaacaa 168  Q
    |||||||||||||||||| |||| ||| | |||||||| |||| |||| || || ||||| ||||||||||  ||||| |||||    
T  34173 ctcctcaccatatctcgctaccagcaccctataccaaaaaccatctctctctaccaacattcgccaacaccttttacctaacaa 34090  T

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Target: scaffold0048 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 122
Target Start/End: Complemental strand, 63864 - 63826
Alignment:
Q  84 cctcctcaccatatctcgccaccaacactcgataccaaa 122  Q
    |||||||| ||||||||||||||||||||| ||||||||    
T  63864 cctcctcatcatatctcgccaccaacactctataccaaa 63826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 221
Target Start/End: Complemental strand, 327669 - 327563
Alignment:
Q  115 ataccaaagaccacctctatcaactaacatacgccaacaccacttacccaacaacgcctcattaaaaacattcaactgtctaacccctaaaccaccatac 214  Q
    |||||| | |||| ||||||| || ||||| ||||||||||| || || ||||| ||   ||||||  | ||||||||||| ||||| ||||| ||||||    
T  327669 ataccacaaaccatctctatccaccaacatccgccaacaccatttccctaacaaagcactattaaactccttcaactgtctcacccccaaacctccatac 327570  T
Q  215 tcctttc 221  Q
    |||||||    
T  327569 tcctttc 327563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1809 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1809
Description:

Target: scaffold1809; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 338
Target Start/End: Complemental strand, 1160 - 1111
Alignment:
Q  289 tttaatcaaaagagattctatggaagagattatacctgatggatccttga 338  Q
    |||| |||||||| ||| ||| ||||||||||||||||||||| ||||||    
T  1160 tttactcaaaagatattatatagaagagattatacctgatggagccttga 1111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 220
Target Start/End: Original strand, 8210 - 8315
Alignment:
Q  115 ataccaaagaccacctctatcaactaacatacgccaacaccacttacccaacaacgcctcattaaaaacattcaactgtctaacccctaaaccaccatac 214  Q
    |||||| | ||||||||| || || ||||| ||||||||||| ||||| ||||| ||   ||||||  | ||||||||||| ||||| ||||| |||| |    
T  8210 ataccacaaaccacctctgtccaccaacatccgccaacaccatttacctaacaaagcactattaaattccttcaactgtctcacccccaaacctccattc 8309  T
Q  215 tccttt 220  Q
    ||||||    
T  8310 tccttt 8315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0533 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 567 - 603
Alignment:
Q  132 tatcaactaacatacgccaacaccacttacccaacaa 168  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  567 tatcaaccaacatacgccaacaccacttccccaacaa 603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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