View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20742_high_5 (Length: 349)
Name: NF20742_high_5
Description: NF20742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20742_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 9e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 6 - 328
Target Start/End: Complemental strand, 47011336 - 47011023
Alignment:
| Q |
6 |
agcaccacagacatttatgtcgagcaacttggtccttctgttaacttgtatctaatttatattctggaaaattagtcacttactaaaaaattagtctccg |
105 |
Q |
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| T |
47011336 |
agcatcactgacatttttgtcgaacaacttggtccttctgttaacatgtatctaatttatattctggaaaattagtcacttactacaaaattagtctccg |
47011237 |
T |
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| Q |
106 |
agttatttcacttattttcaaactagcttacaatcaaacaaaagtagtttctg--gannnnnnnnnnnngcgtatctgcaaatttcaggggtataaattt |
203 |
Q |
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| T |
47011236 |
agttatttcacttattttcaaactagcttacaatcaaacaaaagtagttcctgttttttttttttttttgcatatctgcaaatttcaggggtataaattt |
47011137 |
T |
|
| Q |
204 |
ccgacccctacaaattcaggaggtgaatgggtgatttgctcatctttgatatggttannnnnnnnnnnnngagtagttagtgaatgtttaataattctgt |
303 |
Q |
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| T |
47011136 |
ccgacccctacaaattcaggaggtgaatgggtgatttgctcattttttttattttt-----------tttgagtagttagtgaatgtttaataattctgt |
47011048 |
T |
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| Q |
304 |
tattgaatattgtgatttgatgatg |
328 |
Q |
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| T |
47011047 |
tattgaatattgtgatttgatgatg |
47011023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 63
Target Start/End: Complemental strand, 24133720 - 24133681
Alignment:
| Q |
24 |
gtcgagcaacttggtccttctgttaacttgtatctaattt |
63 |
Q |
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| T |
24133720 |
gtcgagcaaattggtccttctattaacttgtatctaattt |
24133681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 41688593 - 41688549
Alignment:
| Q |
20 |
ttatgtcgagcaacttggtccttctgttaacttgtatctaattta |
64 |
Q |
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| T |
41688593 |
ttatgtcgagcaacttggttcttctattaacttgtatctaattta |
41688549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 44008390 - 44008431
Alignment:
| Q |
24 |
gtcgagcaacttggtccttctgttaacttgtatctaatttat |
65 |
Q |
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| T |
44008390 |
gtcgagcaacttggtctttctgttaacttgaatctagtttat |
44008431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 54064718 - 54064674
Alignment:
| Q |
20 |
ttatgtcgagcaacttggtccttctgttaacttgtatctaattta |
64 |
Q |
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| T |
54064718 |
ttatgtggagcagcttggtccttctaataacttgtatctaattta |
54064674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 64
Target Start/End: Original strand, 3437679 - 3437716
Alignment:
| Q |
27 |
gagcaacttggtccttctgttaacttgtatctaattta |
64 |
Q |
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| T |
3437679 |
gagcaacttggtttttctgttaacttgtatctaattta |
3437716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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