View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20742_high_6 (Length: 342)
Name: NF20742_high_6
Description: NF20742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20742_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 82 - 330
Target Start/End: Original strand, 27556424 - 27556672
Alignment:
| Q |
82 |
catcagttcatattgtttgagttatataactatagcaaagtacatcttaagaactgctgatgatatatcatttttacactatttaaaagctgttgtgcta |
181 |
Q |
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| T |
27556424 |
catcagttcatattgtttgagttatataactatagcaaagtacatcttaaaaactgctgatgatatatcatttttacactatttaaaagctgttgtgcta |
27556523 |
T |
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| Q |
182 |
ttgcctattctacaccacagatttatcatttattgacagttttcaactgtatgaacactatgcaggacaaatactgttggtgtctcaagtggttatggaa |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||| |
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| T |
27556524 |
ttgcctattctacaccacagatttatcatttattgacagttttcaactgtatgaacactatgcaggactactactgttggtgtctcaggtggttatggaa |
27556623 |
T |
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| Q |
282 |
tcaccagcacaagtgacggtgtggtatatatgtggaaattgtctccagg |
330 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27556624 |
tcaccagcacaagtgacggtgtggtatatatgtggaaattgtctacagg |
27556672 |
T |
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