View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20742_low_1 (Length: 301)
Name: NF20742_low_1
Description: NF20742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20742_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-132; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 16 - 285
Target Start/End: Original strand, 2448102 - 2448372
Alignment:
| Q |
16 |
atattatggtagtagaatggtcatgtatcatggtgctaaaggtggtactgtatttgcagttgtacaattgatgacatttggtggaaagtaagtatacctt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2448102 |
atattatggtagtagaatggtcatgtatcatggtgctaaaggtggtactgtatttgcagttgtacaattgatgacatttggtggaaagtaagtatacctt |
2448201 |
T |
|
| Q |
116 |
tttatctcctatctcattccatttatttcattcatagtatttnnnnnnntggcatcagcgacggaaaattagagacggaaaaaacatgaagtcagtctat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2448202 |
tttatctcctatctcattccatttatttcattcatagtatttaaaaaaattgcatcagcgacggaaaattagagacggaaaaaacatgaagtcagtctat |
2448301 |
T |
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| Q |
216 |
aactgcagactggattcaac-tttctatctctggtttatgttggtaattcaactttttgtataattatata |
285 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2448302 |
aactgcagactggattcaacttttctatctctggtttatgttggtaattcaactttttgtataattatata |
2448372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 2619248 - 2619308
Alignment:
| Q |
17 |
tattatggtagtagaatggtcatgtatcatggtgctaaaggtggtactgtatttgcagttg |
77 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2619248 |
tattatggtagcagaatggtcatgtatcatggtgctaaaggtggtactgtatttgctgttg |
2619308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 2678135 - 2678077
Alignment:
| Q |
19 |
ttatggtagtagaatggtcatgtatcatggtgctaaaggtggtactgtatttgcagttg |
77 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2678135 |
ttatggtagcagaatggtcatgtatcatggtgctaaaggtggtactgtatttgctgttg |
2678077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 2573660 - 2573610
Alignment:
| Q |
16 |
atattatggtagtagaatggtcatgtatcatggtgctaaaggtggtactgt |
66 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2573660 |
atattatggtagcagaatggtcatgtatcatggtgctaaaggtggtactgt |
2573610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 2645919 - 2645870
Alignment:
| Q |
17 |
tattatggtagtagaatggtcatgtatcatggtgctaaaggtggtactgt |
66 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2645919 |
tattatggtagcagaatggtcatgtatcatggtgctaaaggtggtactgt |
2645870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 2601138 - 2601092
Alignment:
| Q |
17 |
tattatggtagtagaatggtcatgtatcatggtgctaaaggtggtac |
63 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2601138 |
tattatggtagcagaatggtcatgtatcatggtgctaaaggtggtac |
2601092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 2585556 - 2585603
Alignment:
| Q |
16 |
atattatggtagtagaatggtcatgtatcatggtgctaaaggtggtac |
63 |
Q |
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|||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
2585556 |
atattatggtagcagaatggttatgtatcatggtgctaaaggtggtac |
2585603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 2432071 - 2432128
Alignment:
| Q |
20 |
tatggtagtagaatggtcatgtatcatggtgctaaaggtggtactgtatttgcagttg |
77 |
Q |
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|||||||| | ||||||||||||||||||||||||||| ||||| ||||||| ||||| |
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| T |
2432071 |
tatggtagcataatggtcatgtatcatggtgctaaaggcggtacagtatttgtagttg |
2432128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 17874270 - 17874210
Alignment:
| Q |
17 |
tattatggtagtagaatggtcatgtatcatggtgctaaaggtggtactgtatttgcagttg |
77 |
Q |
| |
|
||||||||||| | | |||| |||||||||||||||||||| || || || |||||||||| |
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| T |
17874270 |
tattatggtagcaaattggttatgtatcatggtgctaaaggagggacagtttttgcagttg |
17874210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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