View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20743_high_7 (Length: 303)
Name: NF20743_high_7
Description: NF20743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20743_high_7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 89 - 303
Target Start/End: Complemental strand, 3269331 - 3269119
Alignment:
| Q |
89 |
caaattatactgaatgttgagttcgaaactaaatttaggaacatttcgtacaagagaaaggatattaacactccatttttaacacnnnnnnnnnnnnnnn |
188 |
Q |
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| T |
3269331 |
caaattatactgaatgttgagttccaaactaaatttaggaacatttcgtacaagagaaaggatattaacactccatttttaacacttttttatttttttc |
3269232 |
T |
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| Q |
189 |
cggaagaaattaaggtggaagtgaattttcttagcactcatctttctacaattatcttatctcatatacttannnnnnncagccccatctaattttctat |
288 |
Q |
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| T |
3269231 |
c-gaagaaattaaggtggaagtgaattttcttagcactcatctttctacaattatcttatgtcatatacttatttttttcagccccatctaattttctat |
3269133 |
T |
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| Q |
289 |
ctctgctcctccaca |
303 |
Q |
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|| || ||||||||| |
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| T |
3269132 |
ctttg-tcctccaca |
3269119 |
T |
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