View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20743_high_8 (Length: 264)

Name: NF20743_high_8
Description: NF20743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20743_high_8
NF20743_high_8
[»] chr1 (5 HSPs)
chr1 (1-252)||(52420788-52421039)
chr1 (35-244)||(37463570-37463768)
chr1 (138-246)||(43241183-43241289)
chr1 (138-246)||(49348196-49348302)
chr1 (138-246)||(51441566-51441672)
[»] chr2 (7 HSPs)
chr2 (135-246)||(24584405-24584514)
chr2 (138-246)||(452418-452524)
chr2 (138-246)||(2609902-2610008)
chr2 (138-246)||(45368427-45368533)
chr2 (53-112)||(39287556-39287615)
chr2 (138-246)||(876528-876634)
chr2 (52-116)||(35284814-35284878)
[»] chr8 (4 HSPs)
chr8 (138-246)||(36566043-36566149)
chr8 (135-246)||(15216071-15216180)
chr8 (138-244)||(42854815-42854919)
chr8 (138-246)||(36544526-36544632)
[»] chr7 (10 HSPs)
chr7 (138-246)||(11593327-11593433)
chr7 (138-246)||(32629982-32630088)
chr7 (138-246)||(33350608-33350714)
chr7 (138-246)||(46356653-46356759)
chr7 (142-248)||(20499481-20499585)
chr7 (138-246)||(36651368-36651474)
chr7 (138-246)||(39907181-39907287)
chr7 (138-246)||(49028655-49028761)
chr7 (138-198)||(36870091-36870151)
chr7 (139-246)||(38896985-38897090)
[»] chr4 (6 HSPs)
chr4 (138-246)||(1777817-1777923)
chr4 (138-246)||(435606-435712)
chr4 (138-246)||(23907104-23907210)
chr4 (135-246)||(39707836-39707945)
chr4 (138-246)||(1212109-1212215)
chr4 (157-220)||(55769198-55769259)
[»] chr3 (6 HSPs)
chr3 (13-121)||(19736654-19736763)
chr3 (13-121)||(19757472-19757581)
chr3 (138-246)||(51448511-51448617)
chr3 (138-246)||(52138202-52138308)
chr3 (135-198)||(9258306-9258369)
chr3 (135-235)||(29816890-29816988)
[»] chr6 (3 HSPs)
chr6 (138-246)||(5258952-5259059)
chr6 (163-246)||(3629604-3629685)
chr6 (138-243)||(6082777-6082880)
[»] scaffold0045 (1 HSPs)
scaffold0045 (162-243)||(88760-88839)
[»] chr5 (7 HSPs)
chr5 (138-246)||(1274639-1274745)
chr5 (138-246)||(1288391-1288497)
chr5 (138-238)||(2076276-2076374)
chr5 (138-246)||(12493164-12493270)
chr5 (50-112)||(35685350-35685412)
chr5 (138-246)||(3394085-3394191)
chr5 (52-121)||(40383945-40384014)


Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 52421039 - 52420788
Alignment:
Q  1 tttcatatctcatgtcttgcttcaacttaggcagagccatacactcctaaagcttgtctctaagtttccaaccttccattcaattcctccatcgactttt 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52421039 tttcatatatcatgtcttgcttcaacttaggcagagccatacactcctaaagcttgtctctaagtttccaaccttccattcaattcctccatcgactttt 52420940  T
Q  101 caagtaggactacattatctgaagagaaaaatataaacatacatctcggtgcaagatctttgatgtgttccattagtacatccaaaattaaggtaaaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  52420939 caagtaggactacattatctgaagagaaaaatataaacatacatctcggtgcaagatctttaatgtgttccattagtaaatccaaaattaaggtaaaatt 52420840  T
Q  201 agataagggtttagggttgagtcttggtacaatcctatggttatggaagaat 252  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  52420839 agataagggtttagggttgagtcttggtgcaatcctatggttatggaagaat 52420788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 244
Target Start/End: Original strand, 37463570 - 37463768
Alignment:
Q  35 agccatacactcctaaagcttgtctctaagtttccaaccttccattcaattcctccatcgacttttcaagtaggactacattatctgaagagaaaaatat 134  Q
    ||||||||||| |||| ||||||||| |||| || ||||| ||||||| |||| || |||||| |||||| |||||||| | ||||| | |             
T  37463570 agccatacacttctaaggcttgtctcaaagtctctaacctcccattcatttccaccctcgactcttcaagcaggactacgtcatctgcaaa--------- 37463660  T
Q  135 aaacatacatctcggtgcaagatctttgatgtgttccattagtacatccaaaattaaggtaaaattagataagggtttagggttgagtcttggtacaatc 234  Q
    || ||||||||||||||| |  |||| |||||||||| | || |||||||||| ||| ||||||  || |||||| ||||||||||  |||||| |||||    
T  37463661 aagcatacatctcggtgctaactcttggatgtgttccgtaagaacatccaaaactaaagtaaaa--aggtaagggcttagggttgacccttggtgcaatc 37463758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 246
Target Start/End: Original strand, 43241183 - 43241289
Alignment:
Q  138 catacatctcggtgcaagatctttgatgtgttccattagtacatccaaaattaaggtaaaattagataagggtttagggttgagtcttggtacaatccta 237  Q
    ||||||||||||||| |  |||| |||||||||| | | ||||||||||| ||| ||||||  ||||||||  ||||||||||  |||||| ||||||||    
T  43241183 catacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaa--agataaggacttagggttgacccttggtgcaatccta 43241280  T
Q  238 tggttatgg 246  Q
    | |||||||    
T  43241281 ttgttatgg 43241289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 246
Target Start/End: Original strand, 49348196 - 49348302
Alignment:
Q  138 catacatctcggtgcaagatctttgatgtgttccattagtacatccaaaattaaggtaaaattagataagggtttagggttgagtcttggtacaatccta 237  Q
    ||||||||||||||| |  |||| |||||||||| | | ||||||||||| ||| ||||||  ||||||||  |||||| |||  |||||| ||||||||    
T  49348196 catacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaa--agataaggacttagggctgacccttggtgcaatccta 49348293  T
Q  238 tggttatgg 246  Q
    | |||||||    
T  49348294 ttgttatgg 49348302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 246
Target Start/End: Original strand, 51441566 - 51441672
Alignment:
Q  138 catacatctcggtgcaagatctttgatgtgttccattagtacatccaaaattaaggtaaaattagataagggtttagggttgagtcttggtacaatccta 237  Q
    ||||||||||||||| |  |||| |||||||||| | | ||||||||||| ||| | ||||  ||||||||  ||||||||||  |||||| ||||||||    
T  51441566 catacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagaaaaa--agataaggacttagggttgacccttggtgcaatccta 51441663  T
Q  238 tggttatgg 246  Q
    | |||||||    
T  51441664 ttgttatgg 51441672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 135 - 246
Target Start/End: Original strand, 24584405 - 24584514
Alignment:
Q  135 aaacatacatctcggtgcaagatctttgatgtgttccattagtacatccaaaattaaggtaaaattagataagggtttagggttgagtcttggtacaatc 234  Q
    |||||||||||||||||  |  |||| |||||||||| ||||||||||||||| ||| ||||||  ||||||||  ||||||||||  |||||| |||||    
T  24584405 aaacatacatctcggtgataactcttggatgtgttccgttagtacatccaaaactaaagtaaaa--agataaggacttagggttgacccttggtgcaatc 24584502  T
Q  235 ctatggttatgg 246  Q
    |||| |||||||    
T  24584503 ctattgttatgg 24584514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 246
Target Start/End: Original strand, 452418 - 452524
Alignment:
Q  138 catacatctcggtgcaagatctttgatgtgttccattagtacatccaaaattaaggtaaaattagataagggtttagggttgagtcttggtacaatccta 237  Q
    ||||||||||||||| |  |||| |||||||||| | | ||||||||||| ||| ||||||  ||||||||  ||||||||||  |||||| ||||||||    
T  452418 catacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaa--agataaggacttagggttgacccttggtgcaatccta 452515  T
Q  238 tggttatgg 246  Q
    | |||||||    
T  452516 ttgttatgg 452524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 246
Target Start/End: Complemental strand, 2610008 - 2609902
Alignment:
Q  138 catacatctcggtgcaagatctttgatgtgttccattagtacatccaaaattaaggtaaaattagataagggtttagggttgagtcttggtacaatccta 237  Q
    ||||||||||||||| |  |||| |||||||||| | | ||||||||||| ||| ||||||  ||||||||  ||||||||||  |||||| ||||||||    
T  2610008 catacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaa--agataaggacttagggttgacccttggtgcaatccta 2609911  T
Q  238 tggttatgg 246  Q
    | |||||||    
T  2609910 ttgttatgg 2609902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 246
Target Start/End: Original strand, 45368427 - 45368533
Alignment:
Q  138 catacatctcggtgcaagatctttgatgtgttccattagtacatccaaaattaaggtaaaattagataagggtttagggttgagtcttggtacaatccta 237  Q
    ||||||||||||||| |  |||| |||||||||| | | ||||||||||| ||| ||||||  ||||||||  ||||||||||  |||||| || |||||    
T  45368427 catacatctcggtgctaattcttggatgtgttccgtcaatacatccaaaactaaagtaaaa--agataaggacttagggttgacccttggtgcagtccta 45368524  T
Q  238 tggttatgg 246  Q
    | |||||||    
T  45368525 ttgttatgg 45368533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 112
Target Start/End: Original strand, 39287556 - 39287615
Alignment:
Q  53 cttgtctctaagtttccaaccttccattcaattcctccatcgacttttcaagtaggacta 112  Q
    ||||||| ||||| ||||| |||||||| |||  |||||||||||||| |||||||||||    
T  39287556 cttgtctttaagtctccaatcttccatttaatctctccatcgactttttaagtaggacta 39287615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 246
Target Start/End: Complemental strand, 876634 - 876528
Alignment:
Q  138 catacatctcggtgcaagatctttgatgtgttccattagtacatccaaaattaaggtaaaattagataagggtttagggttgagtcttggtacaatccta 237  Q
    ||||||||| |||||  | |||| |||||||||| | |||||||||||||  ||||| |||  ||||||||| |||| |||||  |||||| |||||||     
T  876634 catacatcttggtgctcgctcttggatgtgttccgtaagtacatccaaaacgaaggtgaaa--agataagggcttagtgttgaaccttggtgcaatcctg 876537  T
Q  238 tggttatgg 246  Q
    | |||||||    
T  876536 ttgttatgg 876528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 116
Target Start/End: Original strand, 35284814 - 35284878
Alignment:
Q  52 gcttgtctctaagtttccaaccttccattcaattcctccatcgacttttcaagtaggactacatt 116  Q
    ||||||||| |||  ||||| || |||||||||||||||| | ||| |||||| |||||||||||    
T  35284814 gcttgtctcgaagcctccaaactcccattcaattcctccaccaactcttcaagcaggactacatt 35284878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 246
Target Start/End: Original strand, 36566043 - 36566149
Alignment:
Q  138 catacatctcggtgcaagatctttgatgtgttccattagtacatccaaaattaaggtaaaattagataagggtttagggttgagtcttggtacaatccta 237  Q
    ||||||||||||||| |  |||| |||||||||| | | ||||||||||| ||| ||||||  ||||||||  ||||||||||  |||||| ||||||||    
T  36566043 catacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaa--agataaggacttagggttgacccttggtgcaatccta 36566140  T
Q  238 tggttatgg 246  Q
    | |||||||    
T  36566141 ttgttatgg 36566149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 135 - 246
Target Start/End: Original strand, 15216071 - 15216180
Alignment:
Q  135 aaacatacatctcggtgcaagatctttgatgtgttccattagtacatccaaaattaaggtaaaattagataagggtttagggttgagtcttggtacaatc 234  Q
    |||||||||||||||||| |  |||| |||||||||  | ||||||||||||| ||| ||||||  ||||||||  ||||||||||  |||||| || ||    
T  15216071 aaacatacatctcggtgctaactcttggatgtgttctgtcagtacatccaaaactaaagtaaaa--agataaggacttagggttgatccttggtgcagtc 15216168  T
Q  235 ctatggttatgg 246  Q
    |||| |||||||    
T  15216169 ctattgttatgg 15216180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 244
Target Start/End: Original strand, 42854815 - 42854919
Alignment:
Q  138 catacatctcggtgcaagatctttgatgtgttccattagtacatccaaaattaaggtaaaattagataagggtttagggttgagtcttggtacaatccta 237  Q
    ||||||||||||||| |  |||| ||||||||| || || |||||||||| ||| ||||||  ||||||||  ||||||||||  |||||| || |||||    
T  42854815 catacatctcggtgctaactcttggatgtgttctatcaggacatccaaaactaaagtaaaa--agataaggacttagggttgacccttggtgcagtccta 42854912  T
Q  238 tggttat 244  Q
    | |||||    
T  42854913 ttgttat 42854919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 246
Target Start/End: Complemental strand, 36544632 - 36544526
Alignment:
Q  138 catacatctcggtgcaagatctttgatgtgttccattagtacatccaaaattaaggtaaaattagataagggtttagggttgagtcttggtacaatccta 237  Q
    |||||||||| |||| |  |||| |||||||| ||| | ||||||||||| ||| ||||||  |||||||   ||||||||||  |||||| ||||||||    
T  36544632 catacatctcagtgctaactcttggatgtgttgcatcaatacatccaaaactaaagtaaaa--agataagaacttagggttgacccttggtgcaatccta 36544535  T
Q  238 tggttatgg 246  Q
    | |||||||    
T  36544534 ttgttatgg 36544526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 246
Target Start/End: Complemental strand, 11593433 - 11593327
Alignment:
Q  138 catacatctcggtgcaagatctttgatgtgttccattagtacatccaaaattaaggtaaaattagataagggtttagggttgagtcttggtacaatccta 237  Q
    ||||||||||||||| |  |||| |||||||||| | | ||||||||||| ||| ||||||  ||||||||  ||||||||||  |||||| ||||||||    
T  11593433 catacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaa--agataaggacttagggttgacccttggtgcaatccta 11593336  T
Q  238 tggttatgg 246  Q
    | |||||||    
T  11593335 ttgttatgg 11593327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 246
Target Start/End: Complemental strand, 32630088 - 32629982
Alignment:
Q  138 catacatctcggtgcaagatctttgatgtgttccattagtacatccaaaattaaggtaaaattagataagggtttagggttgagtcttggtacaatccta 237  Q
    ||||||||||||||| |  |||| |||||||||| ||||||||||||||| ||  ||||||  ||||||||  ||||||||||  |||||| || |||||    
T  32630088 catacatctcggtgctaactcttggatgtgttccgttagtacatccaaaactagagtaaaa--agataaggacttagggttgacccttggtgcagtccta 32629991  T
Q  238 tggttatgg 246  Q
    | |||||||    
T  32629990 ttgttatgg 32629982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 246
Target Start/End: Original strand, 33350608 - 33350714
Alignment:
Q  138 catacatctcggtgcaagatctttgatgtgttccattagtacatccaaaattaaggtaaaattagataagggtttagggttgagtcttggtacaatccta 237  Q
    ||||||||||||||| |  |||| |||||||||| | | ||||||||||| ||| ||||||  ||||||||  ||||||||||  |||||| ||||||||    
T  33350608 catacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaa--agataaggagttagggttgacccttggtgcaatccta 33350705  T
Q  238 tggttatgg 246  Q
    | |||||||    
T  33350706 ttgttatgg 33350714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 246
Target Start/End: Original strand, 46356653 - 46356759
Alignment:
Q  138 catacatctcggtgcaagatctttgatgtgttccattagtacatccaaaattaaggtaaaattagataagggtttagggttgagtcttggtacaatccta 237  Q
    ||||||||||||||| |  |||| |||||||||| | | ||||||||||| ||| ||||||  ||||||||  ||||||||||  |||||| ||||||||    
T  46356653 catacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaa--agataaggacttagggttgacccttggtgcaatccta 46356750  T
Q  238 tggttatgg 246  Q
    | |||||||    
T  46356751 ttgttatgg 46356759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 248
Target Start/End: Complemental strand, 20499585 - 20499481
Alignment:
Q  142 catctcggtgcaagatctttgatgtgttccattagtacatccaaaattaaggtaaaattagataagggtttagggttgagtcttggtacaatcctatggt 241  Q
    ||||||||||| || |||| ||||||||||   ||||||||||||| ||| ||||||  ||||||||| ||| |||| |  |||||| ||||||||| ||    
T  20499585 catctcggtgctagctcttggatgtgttccgcaagtacatccaaaagtaaagtaaaa--agataagggcttatggttcaaccttggtgcaatcctattgt 20499488  T
Q  242 tatggaa 248  Q
    |||||||    
T  20499487 tatggaa 20499481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 246
Target Start/End: Complemental strand, 36651474 - 36651368
Alignment:
Q  138 catacatctcggtgcaagatctttgatgtgttccattagtacatccaaaattaaggtaaaattagataagggtttagggttgagtcttggtacaatccta 237  Q
    ||||||||||||||| |  |||| |||||||||| | | |||||| |||| ||| ||||||  ||||||||  ||||||||||  |||||| ||||||||    
T  36651474 catacatctcggtgctaactcttggatgtgttccgtcaatacatctaaaactaaagtaaaa--agataaggacttagggttgacccttggtgcaatccta 36651377  T
Q  238 tggttatgg 246  Q
    | |||||||    
T  36651376 ttgttatgg 36651368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 246
Target Start/End: Original strand, 39907181 - 39907287
Alignment:
Q  138 catacatctcggtgcaagatctttgatgtgttccattagtacatccaaaattaaggtaaaattagataagggtttagggttgagtcttggtacaatccta 237  Q
    ||||||||||||||| |  |||| |||||||||| | | ||||||||||| ||| || |||  ||||||||  ||||||||||  |||||| ||||||||    
T  39907181 catacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtgaaa--agataaggacttagggttgacccttggtgcaatccta 39907278  T
Q  238 tggttatgg 246  Q
    | |||||||    
T  39907279 ttgttatgg 39907287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 246
Target Start/End: Complemental strand, 49028761 - 49028655
Alignment:
Q  138 catacatctcggtgcaagatctttgatgtgttccattagtacatccaaaattaaggtaaaattagataagggtttagggttgagtcttggtacaatccta 237  Q
    ||||||||| ||||| |  |||| |||||||||| | | ||||||||||| ||| ||||||  ||||||||  ||||||||||  |||||| ||||||||    
T  49028761 catacatcttggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaa--agataaggacttagggttgacccttggtgcaatccta 49028664  T
Q  238 tggttatgg 246  Q
    | |||||||    
T  49028663 ttgttatgg 49028655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 36870091 - 36870151
Alignment:
Q  138 catacatctcggtgcaagatctttgatgtgttccattagtacatccaaaattaaggtaaaa 198  Q
    ||||||||||||||| || |||| |||||||||| | ||||||||||||| ||| ||||||    
T  36870091 catacatctcggtgctagctcttggatgtgttccgtcagtacatccaaaactaaagtaaaa 36870151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 246
Target Start/End: Complemental strand, 38897090 - 38896985
Alignment:
Q  139 atacatctcggtgcaagatctttgatgtgttccattagtacatccaaaattaaggtaaaattagataagggtttagggttgagtcttggtacaatcctat 238  Q
    |||||||||||||| |  |||| |||||||||| | | ||||||||||| ||| | ||||  ||||||||  ||||||||||  |||||| |||||||||    
T  38897090 atacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagcaaaa--agataaggacttagggttgacccttggtgcaatcctat 38896993  T
Q  239 ggttatgg 246  Q
     |||||||    
T  38896992 tgttatgg 38896985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 246
Target Start/End: Original strand, 1777817 - 1777923
Alignment:
Q  138 catacatctcggtgcaagatctttgatgtgttccattagtacatccaaaattaaggtaaaattagataagggtttagggttgagtcttggtacaatccta 237  Q
    ||||||||||||||| |  |||| |||||||||| | | ||||||||||| ||| || |||  |||||||| |||||||||||  |||||| ||||||||    
T  1777817 catacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagttaaa--agataaggatttagggttgacccttggtgcaatccta 1777914  T
Q  238 tggttatgg 246  Q
    | |||||||    
T  1777915 ttgttatgg 1777923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 246
Target Start/End: Complemental strand, 435712 - 435606
Alignment:
Q  138 catacatctcggtgcaagatctttgatgtgttccattagtacatccaaaattaaggtaaaattagataagggtttagggttgagtcttggtacaatccta 237  Q
    ||||||||||||||| |  |||| |||||||||| | | ||||||||||| ||| ||||||  ||||||||  ||||||||||  |||||| || |||||    
T  435712 catacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaa--agataaggacttagggttgacccttggtgcactccta 435615  T
Q  238 tggttatgg 246  Q
    | |||||||    
T  435614 ttgttatgg 435606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 246
Target Start/End: Original strand, 23907104 - 23907210
Alignment:
Q  138 catacatctcggtgcaagatctttgatgtgttccattagtacatccaaaattaaggtaaaattagataagggtttagggttgagtcttggtacaatccta 237  Q
    ||||||||||||||| |  |||| | |||||||| | | ||||||||||| ||| ||||||  ||||||||  ||||||||||  |||||| ||||||||    
T  23907104 catacatctcggtgctaactcttggttgtgttccgtcaatacatccaaaactaaagtaaaa--agataaggacttagggttgacccttggtgcaatccta 23907201  T
Q  238 tggttatgg 246  Q
    | |||||||    
T  23907202 ttgttatgg 23907210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 246
Target Start/End: Complemental strand, 39707945 - 39707836
Alignment:
Q  135 aaacatacatctcggtgcaagatctttgatgtgttccattagtacatccaaaattaaggtaaaattagataagggtttagggttgagtcttggtacaatc 234  Q
    |||||||||| |||||||||  |||| |||||||||  | ||||||||||||| ||| ||||||  ||||||||  |||||||| |  ||| || |||||    
T  39707945 aaacatacatatcggtgcaaactcttggatgtgttctgtaagtacatccaaaactaaagtaaaa--agataaggacttagggttaacccttagtgcaatc 39707848  T
Q  235 ctatggttatgg 246  Q
    |||| |||||||    
T  39707847 ctattgttatgg 39707836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 246
Target Start/End: Original strand, 1212109 - 1212215
Alignment:
Q  138 catacatctcggtgcaagatctttgatgtgttccattagtacatccaaaattaaggtaaaattagataagggtttagggttgagtcttggtacaatccta 237  Q
    ||||||||||||||| |  |||| ||||||||   | ||||||||||||| ||| || |||  ||||||||  ||||||||||  |||||| ||||||||    
T  1212109 catacatctcggtgctaactcttagatgtgttatgtaagtacatccaaaactaaagtgaaa--agataaggacttagggttgaaccttggtgcaatccta 1212206  T
Q  238 tggttatgg 246  Q
    | |||||||    
T  1212207 ttgttatgg 1212215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 220
Target Start/End: Original strand, 55769198 - 55769259
Alignment:
Q  157 tctttgatgtgttccattagtacatccaaaattaaggtaaaattagataagggtttagggttga 220  Q
    |||| |||||||||||| | ||||||||||| ||| ||||||  ||||||||||| ||||||||    
T  55769198 tcttggatgtgttccataaatacatccaaaactaaagtaaaa--agataagggttcagggttga 55769259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 121
Target Start/End: Complemental strand, 19736763 - 19736654
Alignment:
Q  13 tgtcttgcttcaacttaggcaga-gccatacactcctaaagcttgtctctaagtttccaaccttccattcaattcctccatcgacttttcaagtaggact 111  Q
    ||||||||||| ||| |||| || |||||||||| |||| |||||||||||||| || || || ||||||||||||||| || ||| | |||| ||||||    
T  19736763 tgtcttgcttctactaaggcggatgccatacacttctaaggcttgtctctaagtctctaatctcccattcaattcctccctcaactctccaagcaggact 19736664  T
Q  112 acattatctg 121  Q
     ||| |||||    
T  19736663 gcatcatctg 19736654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 121
Target Start/End: Complemental strand, 19757581 - 19757472
Alignment:
Q  13 tgtcttgcttcaacttaggcaga-gccatacactcctaaagcttgtctctaagtttccaaccttccattcaattcctccatcgacttttcaagtaggact 111  Q
    ||||||||||| ||| |||| || ||||||| || |||| ||||||||| |||| || ||||| ||||||||||||||| || ||| | |||| ||||||    
T  19757581 tgtcttgcttctactaaggcggatgccatacgcttctaaggcttgtctccaagtctctaacctcccattcaattcctccctcaactctccaagcaggact 19757482  T
Q  112 acattatctg 121  Q
     ||| |||||    
T  19757481 gcatcatctg 19757472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 246
Target Start/End: Original strand, 51448511 - 51448617
Alignment:
Q  138 catacatctcggtgcaagatctttgatgtgttccattagtacatccaaaattaaggtaaaattagataagggtttagggttgagtcttggtacaatccta 237  Q
    ||||||||||| ||| |  |||| |||||||||| | | ||||||||||| ||| ||||||  ||||||||  ||||||||||  |||||| ||||||||    
T  51448511 catacatctcgatgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaa--agataaggacttagggttgacccttggtgcaatccta 51448608  T
Q  238 tggttatgg 246  Q
    | |||||||    
T  51448609 ttgttatgg 51448617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 246
Target Start/End: Complemental strand, 52138308 - 52138202
Alignment:
Q  138 catacatctcggtgcaagatctttgatgtgttccattagtacatccaaaattaaggtaaaattagataagggtttagggttgagtcttggtacaatccta 237  Q
    ||||||||||||||| |  |||| |||||||||| | | ||||||||||| ||| ||||||  ||||||||  ||||||||||  |||||| |||| |||    
T  52138308 catacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaa--agataaggacttagggttgatccttggtgcaattcta 52138211  T
Q  238 tggttatgg 246  Q
    | |||||||    
T  52138210 ttgttatgg 52138202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 198
Target Start/End: Complemental strand, 9258369 - 9258306
Alignment:
Q  135 aaacatacatctcggtgcaagatctttgatgtgttccattagtacatccaaaattaaggtaaaa 198  Q
    |||||||||||||||||| |  |||| |||||||||| | ||||||||||||| ||| ||||||    
T  9258369 aaacatacatctcggtgctaactcttggatgtgttccgtaagtacatccaaaactaaagtaaaa 9258306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 235
Target Start/End: Complemental strand, 29816988 - 29816890
Alignment:
Q  135 aaacatacatctcggtgcaagatctttgatgtgttccattagtacatccaaaattaaggtaaaattagataagggtttagggttgagtcttggtacaatc 234  Q
    |||||||||||||||||| |  |||  ||||||||   | ||||||||||||  ||||||||||  || |||||| ||||||||||| |||||| |||||    
T  29816988 aaacatacatctcggtgctaactctaggatgtgttttgtaagtacatccaaacctaaggtaaaa--aggtaagggcttagggttgagccttggtgcaatc 29816891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 138 - 246
Target Start/End: Original strand, 5258952 - 5259059
Alignment:
Q  138 catacatctcggtgcaagatctttgatgtgttccattagtacatccaaaattaaggtaaaattagataagggtttagggttgagtcttggtacaatccta 237  Q
    ||||||||||||||| |  |||| |||||||||| | ||||||||||||| ||| ||||||  ||||||||  |||||||| |  |||||| ||||||||    
T  5258952 catacatctcggtgctaactcttggatgtgttccgtcagtacatccaaaactaaagtaaaa-aagataaggacttagggtttacccttggtgcaatccta 5259050  T
Q  238 tggttatgg 246  Q
    | |||||||    
T  5259051 ttgttatgg 5259059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 246
Target Start/End: Complemental strand, 3629685 - 3629604
Alignment:
Q  163 atgtgttccattagtacatccaaaattaaggtaaaattagataagggtttagggttgagtcttggtacaatcctatggttatgg 246  Q
    ||||||||||| ||||||||||||| ||| ||||||  ||||||||| ||| ||||||  ||| || ||||||||| |||||||    
T  3629685 atgtgttccataagtacatccaaaactaaagtaaaa--agataagggcttaaggttgacccttagtgcaatcctattgttatgg 3629604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 243
Target Start/End: Complemental strand, 6082880 - 6082777
Alignment:
Q  138 catacatctcggtgcaagatctttgatgtgttccattagtacatccaaaattaaggtaaaattagataagggtttagggttgagtcttggtacaatccta 237  Q
    ||||||||||||||| |  |||| |||||||||| | | ||||||||||| ||| ||||||  |||||||   ||||||||||  |||||| ||||||||    
T  6082880 catacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaa--agataagaacttagggttgacccttggtgcaatccta 6082783  T
Q  238 tggtta 243  Q
    | ||||    
T  6082782 ttgtta 6082777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 162 - 243
Target Start/End: Original strand, 88760 - 88839
Alignment:
Q  162 gatgtgttccattagtacatccaaaattaaggtaaaattagataagggtttagggttgagtcttggtacaatcctatggtta 243  Q
    |||||||||| ||||||||||||||| ||| ||||||  || |||||  ||||||||||  |||||| ||||||||||||||    
T  88760 gatgtgttcctttagtacatccaaaagtaatgtaaaa--agttaaggacttagggttgacccttggtgcaatcctatggtta 88839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 246
Target Start/End: Complemental strand, 1274745 - 1274639
Alignment:
Q  138 catacatctcggtgcaagatctttgatgtgttccattagtacatccaaaattaaggtaaaattagataagggtttagggttgagtcttggtacaatccta 237  Q
    ||||||||||||||| |  |||| |||||||||| | | ||||||||||| ||| ||||||  ||||||||  ||||||||||  |||||| |||| |||    
T  1274745 catacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaa--agataaggacttagggttgacccttggtgcaattcta 1274648  T
Q  238 tggttatgg 246  Q
    | |||||||    
T  1274647 ttgttatgg 1274639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 246
Target Start/End: Original strand, 1288391 - 1288497
Alignment:
Q  138 catacatctcggtgcaagatctttgatgtgttccattagtacatccaaaattaaggtaaaattagataagggtttagggttgagtcttggtacaatccta 237  Q
    ||||||||||||||| |  |||| |||||||||| | | ||||||||||| ||| ||||||  | ||||||  ||||||||||  |||||| ||||||||    
T  1288391 catacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaa--atataaggacttagggttgacccttggtgcaatccta 1288488  T
Q  238 tggttatgg 246  Q
    | |||||||    
T  1288489 ttgttatgg 1288497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 238
Target Start/End: Original strand, 2076276 - 2076374
Alignment:
Q  138 catacatctcggtgcaagatctttgatgtgttccattagtacatccaaaattaaggtaaaattagataagggtttagggttgagtcttggtacaatccta 237  Q
    ||||||||||||||| |  |||| |||||||||| | | ||||||||||| ||| ||||||  ||||||||  ||||||||||  |||||| ||||||||    
T  2076276 catacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaa--agataaggacttagggttgacccttggtgcaatccta 2076373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 246
Target Start/End: Original strand, 12493164 - 12493270
Alignment:
Q  138 catacatctcggtgcaagatctttgatgtgttccattagtacatccaaaattaaggtaaaattagataagggtttagggttgagtcttggtacaatccta 237  Q
    ||||||||| ||||| |  |||| |||||||||| | | ||||||||||| ||| ||||||  ||||||||  ||||||||||  |||||| ||||||||    
T  12493164 catacatcttggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaa--agataaggagttagggttgacccttggtgcaatccta 12493261  T
Q  238 tggttatgg 246  Q
    | |||||||    
T  12493262 ttgttatgg 12493270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 35685412 - 35685350
Alignment:
Q  50 aagcttgtctctaagtttccaaccttccattcaattcctccatcgacttttcaagtaggacta 112  Q
    |||||||||  ||||| |||||||  |||||||||||||||  ||||| ||||||||||||||    
T  35685412 aagcttgtccttaagtctccaaccacccattcaattcctcctccgactcttcaagtaggacta 35685350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 246
Target Start/End: Complemental strand, 3394191 - 3394085
Alignment:
Q  138 catacatctcggtgcaagatctttgatgtgttccattagtacatccaaaattaaggtaaaattagataagggtttagggttgagtcttggtacaatccta 237  Q
    ||||||||||||||| |  |||| |||||||||| | ||||||||||||| ||  |||||   ||||||||  |||||||| |  |||||| ||||||||    
T  3394191 catacatctcggtgctaactcttggatgtgttccgtcagtacatccaaaactagagtaaa--gagataaggacttagggtttacccttggtgcaatccta 3394094  T
Q  238 tggttatgg 246  Q
    | |||||||    
T  3394093 ttgttatgg 3394085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 121
Target Start/End: Complemental strand, 40384014 - 40383945
Alignment:
Q  52 gcttgtctctaagtttccaaccttccattcaattcctccatcgacttttcaagtaggactacattatctg 121  Q
    ||||||||||| || ||||| ||||| |||||||||||| || ||| |||||||| || ||||| |||||    
T  40384014 gcttgtctctatgtctccaatcttccgttcaattcctccctcaactcttcaagtatgattacatgatctg 40383945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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