View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20743_low_2 (Length: 422)
Name: NF20743_low_2
Description: NF20743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20743_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 13 - 400
Target Start/End: Original strand, 1035757 - 1036144
Alignment:
| Q |
13 |
aatattgcattggaaaattcaacttcaactctatctaacgacatcactggtaatgacaaagagaaatttcttgacggacttttagtttcaggatttgatg |
112 |
Q |
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| T |
1035757 |
aatattgcattggaaaattcaacttcaa---tatctaacgacatcactggtaatgacaaagagaaatttcttgatggacttttagtttcaggatttgatg |
1035853 |
T |
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| Q |
113 |
aatcatcatgcataagcaggtcacaatctcatcatttctac-acaaaccttctccatatttgttatctaaacttcaaaagtatgaagaaaatcatagaaa |
211 |
Q |
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| T |
1035854 |
aatcatcatgcataagcaggtcacaatctcat---ttctaccacaaaccttctccatatttgttatctaaacttggaaagtatgaagaaaatcatagaaa |
1035950 |
T |
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| Q |
212 |
atgtggaccaaacactagagctttcaacgaagacatgaaaattattgcaaaatataaggaaaatggtactgattgtgctgcaa-----aaacaacatgca |
306 |
Q |
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| T |
1035951 |
atgtggaccaaacactagagctttcaacgaagacatgaaaattattgcaaaatataaggaaaatggtactgattgtgctgcaaaaattaaacaacatgca |
1036050 |
T |
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| Q |
307 |
aatacattatttggttaccagcaaatgggttaggtaaccaaataattagcatggcttcatcatttctttacgcgatgctaacggatcgcgttat |
400 |
Q |
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| T |
1036051 |
aatacattattttgttaccagcaaatgggttaggtaaccaaataattaccgcggcttcatcatttctttacgcgatgctaacggatcgcgttat |
1036144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 371
Target Start/End: Original strand, 1010990 - 1011058
Alignment:
| Q |
303 |
tgcaaatacattatttggttaccagcaaatgggttaggtaaccaaataattagcatggcttcatcattt |
371 |
Q |
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| T |
1010990 |
tgcaaataccttatttggacaccagctaatggtttaggaaaccaaatggttagcatggctgcaacattt |
1011058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 13 - 390
Target Start/End: Complemental strand, 6939087 - 6938703
Alignment:
| Q |
13 |
aatattgcattggaaaattcaacttcaactctatctaacgacatcactggtaatgacaaagagaaatttcttgacggacttttagtttcaggatttgatg |
112 |
Q |
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|||||| ||||| ||||| ||||||||||| | | || || ||||||| | |||| ||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
6939087 |
aatatttcattgacaaatttaacttcaactccaccaaaagagatcactgatgatgagaaagagaaattgcttgacggacttttagtttctggatttgatg |
6938988 |
T |
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| Q |
113 |
aatcatcatgcataagcaggtcacaatctcat-------------catttctacacaaaccttctccatatttgttatctaaacttcaaaagtatgaaga |
199 |
Q |
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| T |
6938987 |
aagcatcatgtgtaagcaggttacaatctcatttctatcacaaaccatctcctcacaaaccttctccatatttgatatctaaactaagaaaatatgaaga |
6938888 |
T |
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| Q |
200 |
aaatcatagaaaatgtggaccaaacactagagctttcaacgaagacatgaaaattattgcaaaatataaggaaaatggtactgattgtgctgcaaaaaca |
299 |
Q |
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| T |
6938887 |
acttcatagaaggtgtggacctaacactagagcttacaatgaagacatgaaaaaaattacaaaatctaagaaaaatggtac---ttctgctgc---aaca |
6938794 |
T |
|
| Q |
300 |
acatgcaaatacattatttggttaccagcaaatgggttaggtaaccaaataattagcatggcttcatcatttctttacgcgatgctaacgg |
390 |
Q |
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| T |
6938793 |
acatgcaaatacattatttggttacctgcaaatggtttaggtaaccaaataattagcatggcttcatcatttctatatgcgctcctaacgg |
6938703 |
T |
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