View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20743_low_3 (Length: 378)

Name: NF20743_low_3
Description: NF20743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20743_low_3
NF20743_low_3
[»] chr6 (4 HSPs)
chr6 (112-361)||(2698107-2698355)
chr6 (20-107)||(2697913-2698000)
chr6 (180-238)||(8030814-8030873)
chr6 (180-242)||(10324477-10324542)
[»] chr8 (3 HSPs)
chr8 (169-242)||(32404606-32404680)
chr8 (188-239)||(45197135-45197187)
chr8 (162-239)||(32286062-32286140)
[»] chr1 (5 HSPs)
chr1 (164-242)||(42915800-42915878)
chr1 (179-232)||(47296020-47296074)
chr1 (179-234)||(13580034-13580090)
chr1 (168-234)||(5198639-5198706)
chr1 (179-242)||(19940583-19940646)
[»] chr5 (2 HSPs)
chr5 (162-242)||(38353628-38353709)
chr5 (181-225)||(9992553-9992598)
[»] chr4 (5 HSPs)
chr4 (180-242)||(34360917-34360980)
chr4 (162-242)||(34650819-34650901)
chr4 (162-242)||(24355770-24355851)
chr4 (198-238)||(19655279-19655319)
chr4 (198-238)||(55291336-55291376)
[»] chr2 (2 HSPs)
chr2 (180-242)||(34353309-34353372)
chr2 (198-242)||(15354366-15354409)
[»] chr3 (2 HSPs)
chr3 (162-242)||(26141686-26141767)
chr3 (179-254)||(36563088-36563162)
[»] chr7 (1 HSPs)
chr7 (179-242)||(37720538-37720601)


Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 112 - 361
Target Start/End: Original strand, 2698107 - 2698355
Alignment:
Q  112 aaggggtaaataatataataaatataaggaaaatgttaactagaagaatagcatttgaagttgtggagtcaactcctcaaaagtttaaaaatgttatttt 211  Q
    ||||||||||||| |  ||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||    
T  2698107 aaggggtaaataacaagataaatataaggaaaatgttaaccagtagaatagtatttgaagttgtggagtcaactcttcaaaagtctaaaaatgttatttt 2698206  T
Q  212 caacttaaaactttcttattttagtttcctttgaccagtgcccaaacaaattatgaagtgaacaaaatcggtcaccacgagtacaatccaacgggtccca 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  2698207 caacttaaaactttcttattttagtttcctttgaccagtgcccaaacaaattatgaagtgaacaaactcagtcaccacgagtacaatccaacgggtccca 2698306  T
Q  312 acttgtggcacgaacccaaattgcaaaagaaattggtgtataagtattca 361  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  2698307 acttgtggcacgaaccc-aattgcaaaagaaattggtgtatgagtattca 2698355  T

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Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 2697913 - 2698000
Alignment:
Q  20 cacaaaactaaacgtagttaccaattcacataagttcaagtaattattccctttttcatttctcaatttcttcaactaggtttttcct 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2697913 cacaaaactaaacgtagttaccaattcacataagttcaagtaattattccctttttcatttctcaatttcttcaactaggtttttcct 2698000  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 238
Target Start/End: Complemental strand, 8030873 - 8030814
Alignment:
Q  180 tcaactcctcaaaagtttaaaaa-tgttattttcaacttaaaactttcttattttagttt 238  Q
    |||||| |||||||||||||||| || ||||||||||||||||||||||| |||| ||||    
T  8030873 tcaacttctcaaaagtttaaaaagtgctattttcaacttaaaactttctttttttggttt 8030814  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 10324477 - 10324542
Alignment:
Q  180 tcaactcctcaaaagtttaaaaa---tgttattttcaacttaaaactttcttattttagtttcctt 242  Q
    |||||||||||||||| ||||||   |  ||||||||||||||||||||||| |||| ||||||||    
T  10324477 tcaactcctcaaaagtctaaaaaaaatagtattttcaacttaaaactttctttttttggtttcctt 10324542  T

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Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 32404680 - 32404606
Alignment:
Q  169 aagttgtggagtcaactcctcaaaagtttaaaaa-tgttattttcaacttaaaactttcttattttagtttcctt 242  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||    
T  32404680 aagttgtgcagtcaactcctcaaaagtttaaaaaatgttattttcaacttaaaactttcttattttggcttcctt 32404606  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 45197187 - 45197135
Alignment:
Q  188 tcaaaagtttaaaaatgt-tattttcaacttaaaactttcttattttagtttc 239  Q
    ||||||||||||||||   ||||||||||||||||||||||| ||||||||||    
T  45197187 tcaaaagtttaaaaattaatattttcaacttaaaactttctttttttagtttc 45197135  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 239
Target Start/End: Original strand, 32286062 - 32286140
Alignment:
Q  162 gcatttgaagttgtggagtcaactcctcaaaagtttaaaaa-tgttattttcaacttaaaactttcttattttagtttc 239  Q
    ||||| ||| ||||| | |||||| ||||||||| |||||| || |||||||||| |||||||||||| |||| |||||    
T  32286062 gcattggaacttgtgcattcaacttctcaaaagtataaaaagtgatattttcaacctaaaactttctttttttggtttc 32286140  T

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Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 164 - 242
Target Start/End: Original strand, 42915800 - 42915878
Alignment:
Q  164 atttgaagttgtggagtcaactcctcaaaagtttaaaaatgttattttcaacttaaaactttcttattttagtttcctt 242  Q
    ||||||||||||| ||||||||| |||||||| ||||| ||||||||| || |||||||||||||||||| | ||||||    
T  42915800 atttgaagttgtgcagtcaactcatcaaaagtctaaaagtgttatttttaaattaaaactttcttattttggcttcctt 42915878  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 232
Target Start/End: Original strand, 47296020 - 47296074
Alignment:
Q  179 gtcaactcctcaaaagtttaaaa-atgttattttcaacttaaaactttcttattt 232  Q
    ||||| ||||||||||| ||||| |||||||||||||||| ||||||||||||||    
T  47296020 gtcaaatcctcaaaagtataaaaaatgttattttcaacttcaaactttcttattt 47296074  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 234
Target Start/End: Original strand, 13580034 - 13580090
Alignment:
Q  179 gtcaactcctcaaaagtttaaaaa-tgttattttcaacttaaaactttcttatttta 234  Q
    ||||||||||| | |||||||||| ||||||||||||||||||||||| || |||||    
T  13580034 gtcaactcctcgatagtttaaaaagtgttattttcaacttaaaactttattgtttta 13580090  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 234
Target Start/End: Complemental strand, 5198706 - 5198639
Alignment:
Q  168 gaagttgtggagtcaactcctcaaaagttta-aaaatgttattttcaacttaaaactttcttatttta 234  Q
    ||||||| | ||||||||| ||||||||||| ||||| ||||||| ||||||||||||| || |||||    
T  5198706 gaagttgcgcagtcaactcgtcaaaagtttaaaaaatattatttttaacttaaaactttattgtttta 5198639  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 19940646 - 19940583
Alignment:
Q  179 gtcaactcctcaaaagtttaaaaa-tgttattttcaacttaaaactttcttattttagtttcctt 242  Q
    ||||||||||||||||  |||||| |||||||||||  ||||||||||| | |||||||||||||    
T  19940646 gtcaactcctcaaaagcataaaaagtgttattttcactttaaaactttcct-ttttagtttcctt 19940583  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 162 - 242
Target Start/End: Complemental strand, 38353709 - 38353628
Alignment:
Q  162 gcatttgaagttgtggagtcaactcctcaaaagtttaaaaa-tgttattttcaacttaaaactttcttattttagtttcctt 242  Q
    ||||| ||| ||||| | |||||||||||||||| |||||| || ||||||||||||||||||||||| ||||| |||||||    
T  38353709 gcattggaacttgtgcattcaactcctcaaaagtctaaaaagtggtattttcaacttaaaactttctttttttaatttcctt 38353628  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 9992598 - 9992553
Alignment:
Q  181 caactcctcaaaagtttaaaaa-tgttattttcaacttaaaacttt 225  Q
    |||||| ||||||||||||||| || ||||||||||||||||||||    
T  9992598 caactcttcaaaagtttaaaaagtggtattttcaacttaaaacttt 9992553  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 34360917 - 34360980
Alignment:
Q  180 tcaactcctcaaaagtttaaaaa-tgttattttcaacttaaaactttcttattttagtttcctt 242  Q
    |||||||||||||||| |||||| || ||||||||||||||||||||||| |||| ||||||||    
T  34360917 tcaactcctcaaaagtctaaaaagtggtattttcaacttaaaactttcttttttttgtttcctt 34360980  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 242
Target Start/End: Complemental strand, 34650901 - 34650819
Alignment:
Q  162 gcatttgaagttgtggagtcaactcctcaaaagtttaaaaa-tgt-tattttcaacttaaaactttcttattttagtttcctt 242  Q
    ||||| ||| ||||| | ||||||||||||||||||||||| ||  |||||||||||||||||||| || |||| ||||||||    
T  34650901 gcattggaatttgtgcattcaactcctcaaaagtttaaaaaatgagtattttcaacttaaaacttttttttttttgtttcctt 34650819  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 162 - 242
Target Start/End: Complemental strand, 24355851 - 24355770
Alignment:
Q  162 gcatttgaagttgtggagtcaactcctcaaaagtttaaaaatgt-tattttcaacttaaaactttcttattttagtttcctt 242  Q
    ||||| ||| ||||| | |||||||||||||||| ||||||  | ||||||||||||||||||||||  |||| ||||||||    
T  24355851 gcattggaacttgtgcattcaactcctcaaaagtctaaaaaattgtattttcaacttaaaactttctctttttggtttcctt 24355770  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 19655279 - 19655319
Alignment:
Q  198 aaaaatgttattttcaacttaaaactttcttattttagttt 238  Q
    ||||||| ||||||||||||||||||||||| |||||||||    
T  19655279 aaaaatggtattttcaacttaaaactttcttgttttagttt 19655319  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 55291336 - 55291376
Alignment:
Q  198 aaaaatgttattttcaacttaaaactttcttattttagttt 238  Q
    ||||||| |||||||||| |||||||||||| |||||||||    
T  55291336 aaaaatgatattttcaacctaaaactttctttttttagttt 55291376  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 34353309 - 34353372
Alignment:
Q  180 tcaactcctcaaaagtttaaaaa-tgttattttcaacttaaaactttcttattttagtttcctt 242  Q
    ||||||||||||||||||||||| || |||||||||||||||| |||||| |||| ||||||||    
T  34353309 tcaactcctcaaaagtttaaaaagtggtattttcaacttaaaattttctttttttggtttcctt 34353372  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 15354409 - 15354366
Alignment:
Q  198 aaaaatgttattttcaacttaaaactttcttattttagtttcctt 242  Q
    ||||||| |||||||||| |||||||||||| |||||||||||||    
T  15354409 aaaaatgatattttcaacctaaaactttctt-ttttagtttcctt 15354366  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 242
Target Start/End: Complemental strand, 26141767 - 26141686
Alignment:
Q  162 gcatttgaagttgtggagtcaactcctcaaaagtttaaaaa-tgttattttcaacttaaaactttcttattttagtttcctt 242  Q
    ||||| ||| ||||| | |||||||||||||| | |||||| || |||||||||||| |||||||||| ||||  |||||||    
T  26141767 gcattggaacttgtgcattcaactcctcaaaaatctaaaaaatggtattttcaactttaaactttctttttttgatttcctt 26141686  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 254
Target Start/End: Original strand, 36563088 - 36563162
Alignment:
Q  179 gtcaactcctcaaaagtttaaaaa-tgttattttcaacttaaaactttcttattttagtttcctttgaccagtgccc 254  Q
    ||||||||||||||||  |||||| |||||||||||  ||||||||||| | ||||||||| |||| ||||||||||    
T  36563088 gtcaactcctcaaaagcataaaaagtgttattttcactttaaaactttcct-ttttagttt-ctttaaccagtgccc 36563162  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 37720601 - 37720538
Alignment:
Q  179 gtcaactcctcaaaagtttaaaaa-tgttattttcaacttaaaactttcttattttagtttcctt 242  Q
    ||||||||||||||||  |||||| |||||||||||  ||||||||||| | |||||||||||||    
T  37720601 gtcaactcctcaaaagcataaaaagtgttattttcactttaaaactttcct-ttttagtttcctt 37720538  T

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