View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20743_low_6 (Length: 307)
Name: NF20743_low_6
Description: NF20743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20743_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 4 - 293
Target Start/End: Original strand, 55036170 - 55036459
Alignment:
| Q |
4 |
atgtcgaagaatatggatcaaattttaaaatttatttatgttttgataatctctatttctttgttttctgtaaccagtgctggcagaagaccatttagta |
103 |
Q |
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| T |
55036170 |
atgttgaaaaatatggctcaaattttaaaatttatttatgttttgataatctctatttctttgttttctgtaaccagtgctggcagaagaccatttagta |
55036269 |
T |
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| Q |
104 |
tgtcatttcttcaccattctcaaattttcttttatatcaaacgcgcgcacgcgctagttgataaacttttagtaacaattctttatttttatttgccacg |
203 |
Q |
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| T |
55036270 |
tgtcatttctttaccattctcaaattttcttttatatcaaacgcgcgcacgcgctagttgatcaacttttagtaacaattctttatttttatttgccatg |
55036369 |
T |
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| Q |
204 |
cagatccattcaattgtcaaactatcattgattgtaaatacaaagcatgtcatcgtcctttaacacgaaagtgcattgatgagaaatgtg |
293 |
Q |
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| T |
55036370 |
cagatccattcaattgtcaaactatcattgattgtaaatacaaagcatgtcatcgtcctttaacacgaaagtgcattgatgagaaatgtg |
55036459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 294
Target Start/End: Complemental strand, 36756860 - 36756755
Alignment:
| Q |
189 |
tttttatttgccacgcagatccattcaattgtcaaactatcattgattgtaaatacaaagcatgtcatcgtcctttaacacgaaagtgcattgatgagaa |
288 |
Q |
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||||||||| || ||||||||| || ||||| ||| ||| |||||||||||| |||||||||||||||||||||||| ||||||| || || | || |
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| T |
36756860 |
tttttatttctcatgcagatccaatcgattgtgaaattattgctgattgtaaatataaagcatgtcatcgtcctttaacagcaaagtgcgttaattataa |
36756761 |
T |
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| Q |
289 |
atgtga |
294 |
Q |
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| T |
36756760 |
atgtga |
36756755 |
T |
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