View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20743_low_9 (Length: 255)

Name: NF20743_low_9
Description: NF20743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20743_low_9
NF20743_low_9
[»] chr1 (12 HSPs)
chr1 (25-255)||(52421050-52421284)
chr1 (100-251)||(1210369-1210526)
chr1 (99-251)||(51601682-51601840)
chr1 (100-255)||(32066772-32066930)
chr1 (57-251)||(51441223-51441422)
chr1 (100-251)||(8671544-8671701)
chr1 (100-255)||(32083246-32083407)
chr1 (66-158)||(27445621-27445713)
chr1 (100-251)||(49347894-49348052)
chr1 (109-158)||(19936245-19936294)
chr1 (103-150)||(51234345-51234392)
chr1 (99-136)||(9592479-9592516)
[»] chr2 (8 HSPs)
chr2 (99-251)||(4807216-4807374)
chr2 (100-251)||(2610152-2610309)
chr2 (100-238)||(11992607-11992751)
chr2 (100-158)||(6238254-6238312)
chr2 (99-158)||(41197728-41197790)
chr2 (99-158)||(45368124-45368183)
chr2 (173-255)||(24584184-24584268)
chr2 (110-158)||(41763560-41763608)
[»] chr7 (14 HSPs)
chr7 (100-251)||(46356352-46356509)
chr7 (100-251)||(31004848-31005004)
chr7 (100-238)||(33350307-33350451)
chr7 (100-251)||(37616540-37616697)
chr7 (100-238)||(36651631-36651775)
chr7 (42-144)||(24425964-24426066)
chr7 (100-158)||(21517826-21517884)
chr7 (100-255)||(38606626-38606786)
chr7 (100-158)||(43281399-43281457)
chr7 (47-90)||(12965817-12965860)
chr7 (100-158)||(36869790-36869848)
chr7 (42-91)||(47439052-47439101)
chr7 (173-255)||(32630227-32630311)
chr7 (162-251)||(49028891-49028983)
[»] chr8 (10 HSPs)
chr8 (100-251)||(36544776-36544933)
chr8 (100-251)||(36565742-36565899)
chr8 (100-158)||(4032995-4033053)
chr8 (100-238)||(12492343-12492487)
chr8 (98-158)||(29735533-29735593)
chr8 (100-255)||(42854505-42854666)
chr8 (100-255)||(15215772-15215932)
chr8 (100-158)||(13984757-13984815)
chr8 (100-158)||(38667280-38667338)
chr8 (109-158)||(33830743-33830792)
[»] chr3 (8 HSPs)
chr3 (99-255)||(25190999-25191161)
chr3 (100-251)||(47542212-47542369)
chr3 (100-251)||(51448210-51448367)
chr3 (100-238)||(27917209-27917353)
chr3 (99-158)||(30345250-30345309)
chr3 (103-144)||(29817241-29817282)
chr3 (57-158)||(28245160-28245261)
chr3 (173-251)||(52138452-52138532)
[»] chr5 (14 HSPs)
chr5 (104-255)||(3394330-3394487)
chr5 (100-251)||(12492888-12493045)
chr5 (100-255)||(16347904-16348064)
chr5 (100-238)||(2075975-2076119)
chr5 (100-251)||(1288090-1288247)
chr5 (100-251)||(10638921-10639078)
chr5 (100-251)||(20318615-20318772)
chr5 (57-144)||(27631-27718)
chr5 (100-252)||(1274888-1275046)
chr5 (104-255)||(3301469-3301626)
chr5 (46-146)||(16779417-16779517)
chr5 (100-251)||(24178148-24178305)
chr5 (100-158)||(36200505-36200563)
chr5 (42-90)||(37124361-37124409)
[»] chr4 (15 HSPs)
chr4 (100-251)||(1777516-1777673)
chr4 (100-251)||(23906802-23906959)
chr4 (100-251)||(435853-436010)
chr4 (99-238)||(33226846-33226991)
chr4 (100-254)||(17666539-17666696)
chr4 (100-236)||(27450674-27450816)
chr4 (44-158)||(3273145-3273259)
chr4 (100-251)||(31960315-31960472)
chr4 (100-251)||(48174594-48174751)
chr4 (100-251)||(53707418-53707575)
chr4 (100-251)||(56374914-56375071)
chr4 (99-144)||(35690042-35690087)
chr4 (103-251)||(48623031-48623185)
chr4 (101-158)||(41009855-41009912)
chr4 (176-255)||(47265785-47265866)
[»] scaffold0570 (1 HSPs)
scaffold0570 (100-238)||(2771-2915)
[»] chr6 (5 HSPs)
chr6 (99-255)||(5631437-5631600)
chr6 (100-236)||(9706415-9706557)
chr6 (100-135)||(30679220-30679255)
chr6 (100-255)||(10100358-10100519)
chr6 (100-156)||(20428137-20428193)
[»] scaffold0018 (1 HSPs)
scaffold0018 (100-251)||(31092-31249)


Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 25 - 255
Target Start/End: Complemental strand, 52421284 - 52421050
Alignment:
Q  25 tccgtcttaaagttattcaataaaatttctccttcaacatgagtggtactttcatatcacgtaaaaacacttaaactcttctctatttcaaccacccaac 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52421284 tccgtcttaaagttattcaataaaatttctccttcaacatgagtggtactttcatatcacgtaaaaacacttaaactcttctctatttcaaccacccaac 52421185  T
Q  125 ttgaattcgatgattaacatatgcttttatttc--tgtcttttgtac-aaagacccaagctatttaaacttgtaacttgtggcatga-atgatctctaac 220  Q
    |||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  52421184 ttgaattcgatgattaacatatgcttttatttctatgtcttttgtactaaagacccaagctatttaaacttgtaacttgtggcatgatatgatctctaac 52421085  T
Q  221 tttcacctacaaggtagagatacttcaccttttgc 255  Q
    ||||||||| |||||||||||||||||||||||||    
T  52421084 tttcacctataaggtagagatacttcaccttttgc 52421050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 100 - 251
Target Start/End: Complemental strand, 1210526 - 1210369
Alignment:
Q  100 ctcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttctg--tc-ttttgtac-aaagacccaagctatttaaact-tgt 194  Q
    |||||||  |||||||||||||| ||||||| |||||  | |||| |||||||||||||   || |||||||| ||||||||||| |||||||||| |||    
T  1210526 ctcttcttcatttcaaccacccagcttgaatacgatggcttacatctgcttttatttctccatcattttgtacgaaagacccaagatatttaaactgtgt 1210427  T
Q  195 aacttgtggcatga-atgatctctaactttcacctacaaggtagagatacttcacctt 251  Q
    |||||| || |||| |||||||| ||||||||||| |||||||||  |||||| ||||    
T  1210426 aacttggggtatgatatgatctccaactttcacctccaaggtagacctacttctcctt 1210369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 99 - 251
Target Start/End: Complemental strand, 51601840 - 51601682
Alignment:
Q  99 actcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct--gtc-ttttgtac-aaagacccaagctatttaaa-cttg 193  Q
    ||||||||||||||| |||||||| ||||||| |||||  | |||| ||||| |||||||  ||| |||||||| || |||||||| |||||||| | ||    
T  51601840 actcttctctatttccaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagatatttaaaccgtg 51601741  T
Q  194 taacttgtggcatga-atgatctctaactttcacctacaaggtagagatacttcacctt 251  Q
    ||||||| || |||| |||||||| ||||||||||| |||||||||  |||||| ||||    
T  51601740 taacttggggtatgatatgatctccaactttcacctccaaggtagacctacttctcctt 51601682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 255
Target Start/End: Original strand, 32066772 - 32066930
Alignment:
Q  100 ctcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct--gtc-ttttgtacaaaga-cccaagctatttaaact-tgt 194  Q
    |||||||| |||| ||||| ||||||||||| |||||||| |||| |||||||||||||  ||| |||||||| | || |||||  |||||||||| |||    
T  32066772 ctcttctccattttaaccatccaacttgaatacgatgatttacatttgcttttatttctctgtcattttgtactatgaacccaaaatatttaaactgtgt 32066871  T
Q  195 aacttgtggcatga-atgatctctaactttcacctacaaggtagagatacttcaccttttgc 255  Q
    |||||||   |||| |||||||| || ||||||||  ||||||||  |||||||||||||||    
T  32066872 aacttgt---atgatatgatctccaattttcacctctaaggtagaactacttcaccttttgc 32066930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 57 - 251
Target Start/End: Original strand, 51441223 - 51441422
Alignment:
Q  57 ttcaacatgagtggtactttcatatcacgtaaaaacacttaaa-ctcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatt 155  Q
    |||||| | |||||||||||| |||| |  |||||||||| |  |||||||| |||||||||||||| |||||||  ||||  | | || ||||| ||||    
T  51441223 ttcaacttaagtggtactttcttatcgc--aaaaacacttgaggctcttctccatttcaaccacccagcttgaatatgatggcttagatctgcttctatt 51441320  T
Q  156 tct--gtc-ttttgtac-aaagacccaagctatttaaact-tgtaacttgtggcatga-atgatctctaactttcacctacaaggtagagatacttcacc 249  Q
    |||  ||| |||||||  ||||||||||| |||||||||| ||||||||| || |||| |||||||| ||||||||||| |||||||||  |||||| ||    
T  51441321 tctccgtcattttgtatgaaagacccaagatatttaaactgtgtaacttggggtatgatatgatctccaactttcaccttcaaggtagacctacttctcc 51441420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 100 - 251
Target Start/End: Complemental strand, 8671701 - 8671544
Alignment:
Q  100 ctcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct--gtc-ttttgtacaaag-acccaagctatttaaact-tgt 194  Q
    |||||||| |||| ||||||||| ||||||| |||||| | |||| ||||| |||||||  ||| |||||||| ||| ||||||| |||||||||  |||    
T  8671701 ctcttctccattttaaccacccagcttgaatacgatgacttacatctgcttctatttcttcgtcattttgtacgaaggacccaagatatttaaaccgtgt 8671602  T
Q  195 aacttgtggcatga-atgatctctaactttcacctacaaggtagagatacttcacctt 251  Q
    |||||  || |||| |||||||| ||||||||||| |||||||||  |||||| ||||    
T  8671601 aacttagggtatgatatgatctccaactttcacctccaaggtagacctacttctcctt 8671544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 100 - 255
Target Start/End: Original strand, 32083246 - 32083407
Alignment:
Q  100 ctcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct--gtc-ttttgtac-aaagacccaagctatttaaact-tgt 194  Q
    |||||||| |||||||||||||| ||||||| |||||||| |||| ||| | |||||||  ||| |||||||| |  |||||||| |||||||| | ||     
T  32083246 ctcttctccatttcaaccacccagcttgaatacgatgatttacatttgcctctatttctccgtcattttgtactatggacccaagatatttaaattgtgc 32083345  T
Q  195 aacttgtggcatga-atgatctctaactttcacctacaaggtagagatacttcaccttttgc 255  Q
    |||||| || |||| |||||||| ||||||||||| |||||||||   ||||| ||||||||    
T  32083346 aacttggggtatgatatgatctccaactttcacctccaaggtagacccacttctccttttgc 32083407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 158
Target Start/End: Complemental strand, 27445713 - 27445621
Alignment:
Q  66 agtggtactttcatatcacgtaaaaacactta-aactcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct 158  Q
    |||||||||||| |||||| ||||| ||||   |||||||||| |||||||||| ||||||||||| |||||||| |||| ||||| |||||||    
T  27445713 agtggtactttcttatcacataaaa-cactcggaactcttctccatttcaaccaaccaacttgaatacgatgatttacatctgcttctatttct 27445621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 100 - 251
Target Start/End: Original strand, 49347894 - 49348052
Alignment:
Q  100 ctcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct--gtc-ttttgtac-aaagacccaagctatttaaac--ttg 193  Q
    |||||||| |||||||||||||| ||||||| |||||  | |||  ||||| |||||||  ||| |||||||| || |||||||| |||||||||   ||    
T  49347894 ctcttctccatttcaaccacccagcttgaatacgatggcttacacctgcttctatttctccgtcattttgtacgaaggacccaagatatttaaaccagtg 49347993  T
Q  194 taacttgtggcatga-atgatctctaactttcacctacaaggtagagatacttcacctt 251  Q
    ||||||| || |||| |||||||| ||||||||||| |||||||||  |||||| ||||    
T  49347994 taacttggggtatgatatgatctccaactttcacctccaaggtagacctacttctcctt 49348052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 158
Target Start/End: Complemental strand, 19936294 - 19936245
Alignment:
Q  109 atttcaaccacccaacttgaattcgatgattaacatatgcttttatttct 158  Q
    |||||||||||||| ||||||| |||||||| |||||||||| |||||||    
T  19936294 atttcaaccacccagcttgaatacgatgatttacatatgcttctatttct 19936245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 103 - 150
Target Start/End: Complemental strand, 51234392 - 51234345
Alignment:
Q  103 ttctctatttcaaccacccaacttgaattcgatgattaacatatgctt 150  Q
    ||||| ||||||||||||||||||||||| ||||||| |||| |||||    
T  51234392 ttctccatttcaaccacccaacttgaatttgatgatttacatctgctt 51234345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 99 - 136
Target Start/End: Complemental strand, 9592516 - 9592479
Alignment:
Q  99 actcttctctatttcaaccacccaacttgaattcgatg 136  Q
    ||||||||| |||||||||||||||||||||| |||||    
T  9592516 actcttctccatttcaaccacccaacttgaatacgatg 9592479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 99 - 251
Target Start/End: Complemental strand, 4807374 - 4807216
Alignment:
Q  99 actcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct--gtc-ttttgtac-aaagacccaagctatttaaact-tg 193  Q
    ||||||||| |||||||||||||| ||||||| |||||  | |||| ||||| |||||||  ||| |||||||| ||||||||||| |||||||||| ||    
T  4807374 actcttctccatttcaaccacccatcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaagacccaagatatttaaactgtg 4807275  T
Q  194 taacttgtggcatga-atgatctctaactttcacctacaaggtagagatacttcacctt 251  Q
    ||||||| || |||| |||||||| ||||||||||| |||||||||  |||||| ||||    
T  4807274 taacttggggtatgatatgatctccaactttcacctccaaggtagacctacttctcctt 4807216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 251
Target Start/End: Complemental strand, 2610309 - 2610152
Alignment:
Q  100 ctcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatt--tctgtc-ttttgtac-aaagacccaagctatttaaa-cttgt 194  Q
    |||||||| |||||||||||||| |||||||  |||| || |||| ||||| ||||  |||||| |||||||| || |||||||| |||||||| | |||    
T  2610309 ctcttctccatttcaaccacccagcttgaatatgatggtttacatctgcttctatttctctgtcattttgtacgaaggacccaagatatttaaaccgtgt 2610210  T
Q  195 aacttgtggcatga-atgatctctaactttcacctacaaggtagagatacttcacctt 251  Q
    |||||| || |||| |||||||| ||||||||||| |||||||||  |||||| ||||    
T  2610209 aacttggggtatgatatgatctccaactttcacctccaaggtagacctacttctcctt 2610152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 100 - 238
Target Start/End: Original strand, 11992607 - 11992751
Alignment:
Q  100 ctcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct--gtc-ttttgtac-aaagacccaagctatttaaa-cttgt 194  Q
    |||||||| |||||||||||||| ||||||| |||||||| |||| ||||| |||||||   || |||||||| | ||||||||| |||||||| | |||    
T  11992607 ctcttctccatttcaaccacccagcttgaatacgatgatttacatctgcttctatttctccatcattttgtactatagacccaagatatttaaaccgtgt 11992706  T
Q  195 aacttgtggcatga-atgatctctaactttcacctacaaggtaga 238  Q
    |||||| || |||| |||||||| |||||||||||  ||||||||    
T  11992707 aacttggggtatgatatgatctccaactttcacctctaaggtaga 11992751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 100 - 158
Target Start/End: Original strand, 6238254 - 6238312
Alignment:
Q  100 ctcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct 158  Q
    |||||||| |||||||||| ||||||||||| |||||||| ||||||| ||||||||||    
T  6238254 ctcttctccatttcaaccatccaacttgaatacgatgatttacatatgtttttatttct 6238312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 158
Target Start/End: Original strand, 41197728 - 41197790
Alignment:
Q  99 actcttctctatttcaaccacccaacttgaattc---gatgattaacatatgcttttatttct 158  Q
    ||||||||| |||||||||||||||||||||| |   ||||||| |||||||||| |||||||    
T  41197728 actcttctccatttcaaccacccaacttgaatacgatgatgattcacatatgcttctatttct 41197790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 158
Target Start/End: Original strand, 45368124 - 45368183
Alignment:
Q  99 actcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct 158  Q
    ||||||||| |||||||||||||| ||||||| |||| ||| |||| ||||| |||||||    
T  45368124 actcttctccatttcaaccacccagcttgaatacgataatttacatctgcttctatttct 45368183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 255
Target Start/End: Original strand, 24584184 - 24584268
Alignment:
Q  173 gacccaagctatttaaact-tgtaacttgtggcatga-atgatctctaactttcacctacaaggtagagatacttcaccttttgc 255  Q
    |||||||| |||||||||  ||||||||| ||  ||| |||||||| ||||||||||| ||||||||| ||| ||| ||||||||    
T  24584184 gacccaagatatttaaaccgtgtaacttgcggtctgatatgatctccaactttcacctccaaggtagacataattctccttttgc 24584268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 41763560 - 41763608
Alignment:
Q  110 tttcaaccacccaacttgaattcgatgattaacatatgcttttatttct 158  Q
    ||||||||||||| ||||||| |||||||| |||| ||||| |||||||    
T  41763560 tttcaaccacccagcttgaatacgatgatttacatctgcttctatttct 41763608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 100 - 251
Target Start/End: Original strand, 46356352 - 46356509
Alignment:
Q  100 ctcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct--gtc-ttttgtacaaa-gacccaagctatttaaa-cttgt 194  Q
    |||||||| |||||||||||||||||||||| |||||  | |||| ||||| |||||||  ||| ||||||||||| |||||||| |||||||| | |||    
T  46356352 ctcttctccatttcaaccacccaacttgaatacgatggcttacatctgcttctatttctccgtcattttgtacaaaggacccaagatatttaaaccgtgt 46356451  T
Q  195 aacttgtggcatga-atgatctctaactttcacctacaaggtagagatacttcacctt 251  Q
    |||||| || |||| |||||||| ||||||||||| |||||||||  |||||| ||||    
T  46356452 aacttggggtatgatatgatctccaactttcacctccaaggtagacctacttctcctt 46356509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 100 - 251
Target Start/End: Complemental strand, 31005004 - 31004848
Alignment:
Q  100 ctcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct--gtc-ttttgtac-aaagacccaagctatttaaacttgta 195  Q
    |||||||| |||||||||||||||||||||| |||||  | |||| ||||| |||||||  ||| |||||||| || || ||||| ||||||||| ||||    
T  31005004 ctcttctccatttcaaccacccaacttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaggagccaagatatttaaacgtgta 31004905  T
Q  196 acttgtggcatga-atgatctctaactttcacctacaaggtagagatacttcacctt 251  Q
    ||||| || |||| |||||||| ||||||||||| |||||||||  |||||| ||||    
T  31004904 acttggggtatgatatgatctccaactttcacctccaaggtagacctacttctcctt 31004848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 100 - 238
Target Start/End: Original strand, 33350307 - 33350451
Alignment:
Q  100 ctcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct--gtc-ttttgtac-aaagacccaagctatttaaa-cttgt 194  Q
    |||||||| |||||||||||||| ||||||| |||||  | |||| ||||| |||||||  ||| |||||||| |||||||| || |||||||| | |||    
T  33350307 ctcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaagaccctagatatttaaaccgtgt 33350406  T
Q  195 aacttgtggcatga-atgatctctaactttcacctacaaggtaga 238  Q
    |||||| || |||| |||||||| ||||||||||| |||||||||    
T  33350407 aacttggggtatgatatgatctccaactttcacctccaaggtaga 33350451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 100 - 251
Target Start/End: Complemental strand, 37616697 - 37616540
Alignment:
Q  100 ctcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct--gtc-ttttgtacaaa-gacccaagctatttaaa-cttgt 194  Q
    |||||||| |||||||||||||| ||||||| | |||  | |||| ||||| |||||||  ||| ||||||||||| |||||||| |||||||| | |||    
T  37616697 ctcttctccatttcaaccacccagcttgaatacaatggcttacatctgcttctatttctccgtcattttgtacaaaggacccaagatatttaaatcgtgt 37616598  T
Q  195 aacttgtggcatga-atgatctctaactttcacctacaaggtagagatacttcacctt 251  Q
    |||||| || |||| |||||||| | ||||||||| |||||||||  |||||| ||||    
T  37616597 aacttggggtatgatatgatctccacctttcacctccaaggtagacctacttctcctt 37616540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 238
Target Start/End: Complemental strand, 36651775 - 36651631
Alignment:
Q  100 ctcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct--gtc-ttttgtac-aaagacccaagctatttaaa-cttgt 194  Q
    |||||||| |||||||||||||| ||||||| |||||  | |||| ||||| |||||||  ||| |||||||| || |||||||| |||||||| |  ||    
T  36651775 ctcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagatatttaaaccgcgt 36651676  T
Q  195 aacttgtggcatga-atgatctctaactttcacctacaaggtaga 238  Q
    |||||| || |||| |||||||| ||||||||||| |||||||||    
T  36651675 aacttggggtatgatatgatctccaactttcacctccaaggtaga 36651631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 144
Target Start/End: Original strand, 24425964 - 24426066
Alignment:
Q  42 caataaaatttctccttcaacatgagtggtactttcatatcacgtaaaaacacttaaa-ctcttctctatttcaaccacccaacttgaattcgatgatta 140  Q
    ||||| |||||  |||||||| | |||||||||| |||||||| ||||| |||||||| ||||||| |||||||||||| |||||| ||| | ||||||     
T  24425964 caatagaattttcccttcaacttaagtggtacttacatatcacataaaa-cacttaaaactcttctatatttcaaccactcaacttaaatacaatgattg 24426062  T
Q  141 acat 144  Q
    ||||    
T  24426063 acat 24426066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 100 - 158
Target Start/End: Original strand, 21517826 - 21517884
Alignment:
Q  100 ctcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct 158  Q
    |||||||| ||||||||||||||||||||||  ||||||| ||||||| | ||||||||    
T  21517826 ctcttctcgatttcaaccacccaacttgaatatgatgatttacatatgttattatttct 21517884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 100 - 255
Target Start/End: Complemental strand, 38606786 - 38606626
Alignment:
Q  100 ctcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct--gtc-ttttgtac-aaagacccaagctatttaaa-cttgt 194  Q
    |||||||| |||||||||||||| ||||||| ||||| || |||| ||||| |||||||  ||| |||||||| |  |||||||| |||||||| | |||    
T  38606786 ctcttctccatttcaaccacccagcttgaatacgatggtttacatctgcttctatttcttcgtcattttgtactatggacccaagatatttaaaccgtgt 38606687  T
Q  195 aacttgtggcatga-atgatctctaactttcacctacaaggtagagatacttcaccttttgc 255  Q
    |||||| |  |||| |||||||| ||||||||||| |||||||||   ||||| ||||||||    
T  38606686 aacttgggatatgatatgatctccaactttcacct-caaggtagacccacttctccttttgc 38606626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 100 - 158
Target Start/End: Complemental strand, 43281457 - 43281399
Alignment:
Q  100 ctcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct 158  Q
    |||||||| |||||||||||||| ||||||| |||||||| |||| ||||| |||||||    
T  43281457 ctcttctccatttcaaccacccagcttgaatacgatgatttacatctgcttctatttct 43281399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 90
Target Start/End: Complemental strand, 12965860 - 12965817
Alignment:
Q  47 aaatttctccttcaacatgagtggtactttcatatcacgtaaaa 90  Q
    |||||||||||||||| |||||||||||||| |||||| |||||    
T  12965860 aaatttctccttcaacttgagtggtactttcgtatcacataaaa 12965817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 158
Target Start/End: Original strand, 36869790 - 36869848
Alignment:
Q  100 ctcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct 158  Q
    |||||||| |||||||||||||| ||||||| |||||  | |||| |||||||||||||    
T  36869790 ctcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttttatttct 36869848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 47439101 - 47439052
Alignment:
Q  42 caataaaatttctccttcaacatgagtggtactttcatatcacgtaaaaa 91  Q
    ||||||||||||||||| ||| | |||||||||||| |||||| ||||||    
T  47439101 caataaaatttctcctttaacttaagtggtactttcgtatcacataaaaa 47439052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 255
Target Start/End: Complemental strand, 32630311 - 32630227
Alignment:
Q  173 gacccaagctatttaaact-tgtaacttgtggcatga-atgatctctaactttcacctacaaggtagagatacttcaccttttgc 255  Q
    |||||||| |||||||||  ||||||||| || |||| |||||||| ||||||||||| |||||||||   ||||| ||||||||    
T  32630311 gacccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctccaaggtagacccacttctccttttgc 32630227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 251
Target Start/End: Complemental strand, 49028983 - 49028891
Alignment:
Q  162 ttttgtacaaag-acccaagctatttaaact-tgtaacttgtggcatgaa-tgatctctaactttcacctacaaggtagagatacttcacctt 251  Q
    |||||||||||| ||||||| |||||||||  ||||||||| || ||||  ||||||| ||||||||||| |||||||||  |||||| ||||    
T  49028983 ttttgtacaaaggacccaagatatttaaaccgtgtaacttggggtatgatctgatctccaactttcacctccaaggtagacctacttctcctt 49028891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 100 - 251
Target Start/End: Complemental strand, 36544933 - 36544776
Alignment:
Q  100 ctcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct--gtc-ttttgtac-aaagacccaagctatttaaa-cttgt 194  Q
    ||||| || |||||||||||||||||||||| |||||| | |||| ||||| |||||||  ||| |||||||| |||| |||| | |||||||| |||||    
T  36544933 ctcttatccatttcaaccacccaacttgaatacgatgacttacatctgcttctatttctccgtcattttgtacgaaagccccatgatatttaaaccttgt 36544834  T
Q  195 aacttgtggcatga-atgatctctaactttcacctacaaggtagagatacttcacctt 251  Q
    |||||| || |||| |||||||| ||||||||||| |||||||||  |||||| ||||    
T  36544833 aacttggggtatgatatgatctccaactttcacctccaaggtagacctacttctcctt 36544776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 100 - 251
Target Start/End: Original strand, 36565742 - 36565899
Alignment:
Q  100 ctcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct--gtc-ttttgtacaaa-gacccaagctatttaaa-cttgt 194  Q
    |||||||| |||||||||||||| ||||||| |||||  | |||| ||||| |||||||  ||| ||||||||||| |||||||| |||||||| | |||    
T  36565742 ctcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacaaaggacccaagatatttaaaccgtgt 36565841  T
Q  195 aacttgtggcatga-atgatctctaactttcacctacaaggtagagatacttcacctt 251  Q
    |||||| || |||| |||||||| ||||||||||| |||||||||  |||||| ||||    
T  36565842 aacttggggtatgatatgatctccaactttcacctccaaggtagacctacttctcctt 36565899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 158
Target Start/End: Original strand, 4032995 - 4033053
Alignment:
Q  100 ctcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct 158  Q
    |||||||| ||||||||||||||||||||||  ||||||| ||||||||||||||||||    
T  4032995 ctcttctccatttcaaccacccaacttgaatatgatgatttacatatgcttttatttct 4033053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 238
Target Start/End: Original strand, 12492343 - 12492487
Alignment:
Q  100 ctcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct--gtc-ttttgtac-aaagacccaagctatttaaa-cttgt 194  Q
    |||||||| |||||||||||||||| ||||| ||||   | |||| ||||| |||||||  ||| |||||||| || |||||||| |||||||| | |||    
T  12492343 ctcttctccatttcaaccacccaacctgaatacgatagcttacatctgcttctatttctccgtcattttgtacgaaggacccaagatatttaaaccgtgt 12492442  T
Q  195 aacttgtggcatga-atgatctctaactttcacctacaaggtaga 238  Q
    |||||| || |||| |||||||| ||||||||||| |||||||||    
T  12492443 aacttggggtatgatatgatctccaactttcacctccaaggtaga 12492487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 158
Target Start/End: Complemental strand, 29735593 - 29735533
Alignment:
Q  98 aactcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct 158  Q
    ||||| |||| ||||||||||||||||||||||  ||||||| |||||||||| |||||||    
T  29735593 aactcatctccatttcaaccacccaacttgaataagatgatttacatatgcttctatttct 29735533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 255
Target Start/End: Original strand, 42854505 - 42854666
Alignment:
Q  100 ctcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct---gtcttttgtac-aaagacccaagctatttaaa-cttgt 194  Q
    |||||||| |||||||||||||| ||||||| |||||||| |||| ||||| |||||||      |||||||| |  |||||||| |||||||| | |||    
T  42854505 ctcttctccatttcaaccacccagcttgaatacgatgatttacatctgcttctatttctcaaacattttgtacgatggacccaagatatttaaaccgtgt 42854604  T
Q  195 aacttgtggcatga-atgatctctaactttcacctacaaggtagagatacttcaccttttgc 255  Q
    |||||| || |||| |||||||| | ||||||||| |||||||||   ||||| ||||||||    
T  42854605 aacttggggtatgatatgatctccacctttcacctccaaggtagacccacttctccttttgc 42854666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 255
Target Start/End: Original strand, 15215772 - 15215932
Alignment:
Q  100 ctcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttt-tatttctgtc-ttttgtac-aaagacccaagctatttaaa-cttgta 195  Q
    |||||||| |||||||||||| | ||||||| |||||||| |||| |||||| ||||||||||  ||||||| |  |||||||  |||||||| | ||||    
T  15215772 ctcttctccatttcaaccacctagcttgaatacgatgatttacatctgctttctatttctgtcactttgtactatggacccaatatatttaaaccgtgta 15215871  T
Q  196 acttgtggcatga-atgatctctaactttcacctacaaggtagagatacttcaccttttgc 255  Q
    ||||  || |||| |||||||| ||||||||||| || ||||||   ||||| ||||||||    
T  15215872 actttgggtatgatatgatctccaactttcacctccatggtagacccacttctccttttgc 15215932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 158
Target Start/End: Complemental strand, 13984815 - 13984757
Alignment:
Q  100 ctcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct 158  Q
    |||||||  |||||||||| ||||||| ||| |||||||| |||| |||||||||||||    
T  13984815 ctcttcttcatttcaaccatccaacttaaatacgatgatttacatctgcttttatttct 13984757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 158
Target Start/End: Complemental strand, 38667338 - 38667280
Alignment:
Q  100 ctcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct 158  Q
    |||| |||||||||||||| ||||||| ||| |||||||| |||| | |||||||||||    
T  38667338 ctctactctatttcaaccatccaactttaatacgatgatttacatcttcttttatttct 38667280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 33830743 - 33830792
Alignment:
Q  109 atttcaaccacccaacttgaattcgatgattaacatatgcttttatttct 158  Q
    |||| ||||| ||||||||||  |||||||| ||||||||||||||||||    
T  33830743 attttaaccatccaacttgaacacgatgatttacatatgcttttatttct 33830792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 99 - 255
Target Start/End: Complemental strand, 25191161 - 25190999
Alignment:
Q  99 actcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct--gtc-ttttgtac-aaagacccaagctatttaaa-cttg 193  Q
    ||||||||| |||||||||||||| ||||||| |||||||| |||| ||||| |||||||   || |||||||| | ||||||||| |||||||| | ||    
T  25191161 actcttctccatttcaaccacccagcttgaatacgatgatttacatttgcttctatttctccatcattttgtactatagacccaagatatttaaaccgtg 25191062  T
Q  194 taacttgtggcatga-atgatctctaactttcacctacaaggtagagatacttcaccttttgc 255  Q
    ||||||| |  |||| |||||||| ||||||||||| |||||||||   ||||| ||||||||    
T  25191061 taacttgggctatgatatgatctccaactttcacctccaaggtagacccacttctccttttgc 25190999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 100 - 251
Target Start/End: Original strand, 47542212 - 47542369
Alignment:
Q  100 ctcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct--gtc-ttttgtacaaag-acccaagctatttaaact-tgt 194  Q
    |||||||| |||||||||||||| |||||||  ||||  | |||| ||||| |||||||  ||| |||||||| ||| ||||||| |||||||||  |||    
T  47542212 ctcttctccatttcaaccacccagcttgaatatgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagatatttaaaccgtgt 47542311  T
Q  195 aacttgtggcatgaa-tgatctctaactttcacctacaaggtagagatacttcacctt 251  Q
    |||||| || ||||| ||||||| ||||||||||| |||||||||  |||||| ||||    
T  47542312 aacttggggtatgaaatgatctccaactttcacctccaaggtagacctacttctcctt 47542369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 100 - 251
Target Start/End: Original strand, 51448210 - 51448367
Alignment:
Q  100 ctcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct--gtc-ttttgtac-aaagacccaagctatttaaa-cttgt 194  Q
    |||||||| |||||||||||||| ||||||| ||||   | |||| ||||| |||||||  ||| |||||||| || |||||||| |||||||| | |||    
T  51448210 ctcttctccatttcaaccacccagcttgaatacgatagcttacatctgcttctatttctccgtcattttgtacgaaggacccaagatatttaaaccgtgt 51448309  T
Q  195 aacttgtggcatga-atgatctctaactttcacctacaaggtagagatacttcacctt 251  Q
    |||||| || |||| |||||||| ||||||||||| |||||||||  |||||| ||||    
T  51448310 aacttggggtatgatatgatctccaactttcacctccaaggtagacctacttctcctt 51448367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 238
Target Start/End: Complemental strand, 27917353 - 27917209
Alignment:
Q  100 ctcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct--gtc-ttttgtac-aaagacccaagctatttaaa-cttgt 194  Q
    ||||||||||||||| | ||||||||||||| |||||||| | |||||||| |||||||  ||| |||||||| |  ||| |||| |||||||| | |||    
T  27917353 ctcttctctatttcagctacccaacttgaatacgatgatttatatatgcttatatttctccgtcattttgtactatggactcaagatatttaaaccgtgt 27917254  T
Q  195 aacttgtggcatga-atgatctctaactttcacctacaaggtaga 238  Q
    |||||| |  |||| |||||||| ||||||||||| |||||||||    
T  27917253 aacttgggatatgatatgatctccaactttcaccttcaaggtaga 27917209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 158
Target Start/End: Complemental strand, 30345309 - 30345250
Alignment:
Q  99 actcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct 158  Q
    ||||||||| |||||||||||||||||||||| | |||||| | ||||| ||||||||||    
T  30345309 actcttctccatttcaaccacccaacttgaatactatgatttatatatgtttttatttct 30345250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 144
Target Start/End: Complemental strand, 29817282 - 29817241
Alignment:
Q  103 ttctctatttcaaccacccaacttgaattcgatgattaacat 144  Q
    |||||||||||||||||||||||||||| |||||||| ||||    
T  29817282 ttctctatttcaaccacccaacttgaatacgatgatttacat 29817241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 158
Target Start/End: Complemental strand, 28245261 - 28245160
Alignment:
Q  57 ttcaacatgagtggtactttcatatcacgtaaaaacacttaaactcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttattt 156  Q
    |||||| | |||||||||||| |||| |  ||||  ||| | ||||||||| |||||||||||||| ||||||| |||||  | |||| ||||| |||||    
T  28245261 ttcaacttaagtggtactttcttatcgcacaaaacaactgagactcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctattt 28245162  T
Q  157 ct 158  Q
    ||    
T  28245161 ct 28245160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 251
Target Start/End: Complemental strand, 52138532 - 52138452
Alignment:
Q  173 gacccaagctatttaaact-tgtaacttgtggcatga-atgatctctaactttcacctacaaggtagagatacttcacctt 251  Q
    |||||||| |||||||||  ||||||||| || |||| |||||||| ||||||||||| |||||||||  |||||| ||||    
T  52138532 gacccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctccaaggtagacctacttctcctt 52138452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 104 - 255
Target Start/End: Complemental strand, 3394487 - 3394330
Alignment:
Q  104 tctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct--gtc-ttttgtac-aaagacccaagctatttaaa-cttgtaact 198  Q
    |||| |||||||||||||| ||||||| |||||||| |||| ||||| |||||||  ||| |||||||| |  |||||||| |||||||| | |||||||    
T  3394487 tctccatttcaaccacccagcttgaatacgatgatttacatctgcttctatttctccgtcattttgtactatggacccaagatatttaaaccgtgtaact 3394388  T
Q  199 tgtggcatga-atgatctctaactttcacctacaaggtagagatacttcaccttttgc 255  Q
    || || |||| |||||||| ||||||||||| |||||||||   ||||| ||||||||    
T  3394387 tggggtatgatatgatctccaactttcacctccaaggtagacccacttctccttttgc 3394330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 251
Target Start/End: Original strand, 12492888 - 12493045
Alignment:
Q  100 ctcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct--gtc-ttttgtac-aaagacccaagctatttaaa-cttgt 194  Q
    |||||||| |||||||||||||| ||||||| |||||  | |||| ||||| |||||||  ||| |||||||| || |||||||| |||||||| | |||    
T  12492888 ctcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagatatttaaaccgtgt 12492987  T
Q  195 aacttgtggcatga-atgatctctaactttcacctacaaggtagagatacttcacctt 251  Q
    |||||| || |||| |||||||| |||||| |||| |||||||||| |||||| ||||    
T  12492988 aacttggggtatgatatgatctccaacttttacctccaaggtagagctacttctcctt 12493045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 255
Target Start/End: Original strand, 16347904 - 16348064
Alignment:
Q  100 ctcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct--gtc-ttttgtac-aaagacccaagctatttaaa-cttgt 194  Q
    |||||||| |||||||||||| | ||||||| |||||||| ||||| ||||||||||||  ||| |||||||| |  ||| |||| |||||||| | |||    
T  16347904 ctcttctccatttcaaccaccta-cttgaatacgatgatttacatacgcttttatttctccgtcattttgtactatggacacaagatatttaaaccgtgt 16348002  T
Q  195 aacttgtggcatga-atgatctctaactttcacctacaaggtagagatacttcaccttttgc 255  Q
    |||||| || |||| |||||||| ||||||||||| |||||||||  |||||| ||||||||    
T  16348003 aacttggggtatgatatgatctccaactttcacctccaaggtagacctacttctccttttgc 16348064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 100 - 238
Target Start/End: Original strand, 2075975 - 2076119
Alignment:
Q  100 ctcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatt--tctgtc-ttttgtac-aaagacccaagctatttaaa-cttgt 194  Q
    |||||||  |||||||||||||||||||||| |||||  | |||| ||||| ||||  |||||| |||||||| || |||||||| |||||||| | |||    
T  2075975 ctcttcttcatttcaaccacccaacttgaatacgatggcttacatctgcttctatttctctgtcattttgtacgaaggacccaagatatttaaaccgtgt 2076074  T
Q  195 aacttgtggcatga-atgatctctaactttcacctacaaggtaga 238  Q
    |||||| || |||| |||||||| ||||||||||| |||||||||    
T  2076075 aacttggggtatgatatgatctccaactttcacctccaaggtaga 2076119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 100 - 251
Target Start/End: Original strand, 1288090 - 1288247
Alignment:
Q  100 ctcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct--gtc-ttttgtac-aaagacccaagctatttaaa-cttgt 194  Q
    |||||||| |||||||||| ||||||||||| |||||  | |||| ||||| |||||||  ||| |||||||| || ||| |||| |||||||| | |||    
T  1288090 ctcttctccatttcaaccatccaacttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaggactcaagatatttaaaccgtgt 1288189  T
Q  195 aacttgtggcatga-atgatctctaactttcacctacaaggtagagatacttcacctt 251  Q
    |||||| || |||| |||||||| ||||||||||| |||||||||  |||||| ||||    
T  1288190 aacttggggtatgatatgatctccaactttcacctccaaggtagacttacttctcctt 1288247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 100 - 251
Target Start/End: Complemental strand, 10639078 - 10638921
Alignment:
Q  100 ctcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct--gtc-ttttgtac-aaagacccaagctatttaaa-cttgt 194  Q
    |||||||| |||||||||||||| ||||||| |||||  | |||| ||||| |||||||  ||| |||||||| || |||||||| |||||||| | |||    
T  10639078 ctcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagatatttaaaccgtgt 10638979  T
Q  195 aacttgtggcatga-atgatctctaactttcacctacaaggtagagatacttcacctt 251  Q
    |||||| || |||| ||||| || ||||||||||| |||||||||  |||||| ||||    
T  10638978 aacttggggtatgatatgatttccaactttcacctccaaggtagacctacttctcctt 10638921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 100 - 251
Target Start/End: Complemental strand, 20318772 - 20318615
Alignment:
Q  100 ctcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct--gtc-ttttgtacaaag-acccaagctatttaaact-tgt 194  Q
    |||||||| |||||||||||||| |||||||  ||||  | |||| ||||| |||||||  ||| |||||||| ||| ||||||| |||||||||  |||    
T  20318772 ctcttctccatttcaaccacccagcttgaatatgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagatatttaaaccgtgt 20318673  T
Q  195 aacttgtggcatga-atgatctctaactttcacctacaaggtagagatacttcacctt 251  Q
    |||||| || |||| |||||||| ||||||||||| |||||||||  |||||| ||||    
T  20318672 aacttggggtatgatatgatctccaactttcacctccaaggtagaactacttctcctt 20318615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 144
Target Start/End: Complemental strand, 27718 - 27631
Alignment:
Q  57 ttcaacatgagtggtactttcatatcacgtaaaaacacttaa-actcttctctatttcaaccacccaacttgaattcgatgattaacat 144  Q
    |||||| | |||||||||||| |||||||||||| ||||  | ||||||||||||||| ||||||||||||||||  ||||||| ||||    
T  27718 ttcaacttaagtggtactttcttatcacgtaaaa-cactcgagactcttctctatttccaccacccaacttgaatatgatgatttacat 27631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 252
Target Start/End: Complemental strand, 1275046 - 1274888
Alignment:
Q  100 ctcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct--gtc-ttttgtac-aaagacccaagctatttaaa-cttgt 194  Q
    |||||||  |||||||||||||| ||||||| |||||  | |||| ||||| |||||||  ||| |||||||| || |||||||| |||||||| | |||    
T  1275046 ctcttcttcatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagatatttaaaccgtgt 1274947  T
Q  195 aacttgtggcatga-atgatctctaactttcacctacaaggtagagatacttcaccttt 252  Q
    |||||| || |||| |||||||| |||||||| || |||||||||  |||||| |||||    
T  1274946 aacttggggtatgatatgatctccaactttcatctccaaggtagacctacttctccttt 1274888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 104 - 255
Target Start/End: Complemental strand, 3301626 - 3301469
Alignment:
Q  104 tctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct--gtc-ttttgtac-aaagacccaagctatttaaa-cttgtaact 198  Q
    ||||||||||||||||||| ||||||| ||||||||  ||| ||||| |||||||   || ||| |||| |  |||||||| |||||||| | |||||||    
T  3301626 tctctatttcaaccacccagcttgaatacgatgatttgcatctgcttctatttctccttcatttggtactatggacccaagatatttaaaccgtgtaact 3301527  T
Q  199 tgtggcatga-atgatctctaactttcacctacaaggtagagatacttcaccttttgc 255  Q
    || || |||| |||||||| ||||||||||| |||||||||   ||||| ||||||||    
T  3301526 tggggtatgatatgatctccaactttcacctccaaggtagacccacttctccttttgc 3301469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 146
Target Start/End: Complemental strand, 16779517 - 16779417
Alignment:
Q  46 aaaatttctccttcaacatgagtggtactttcatatcacgtaaaaacacttaaactcttctctatttcaaccacccaacttgaattcgatgattaacata 145  Q
    |||||||||| |||||| ||| |||||||||| |||||| |||||   || |  |||||||| ||||||||||| ||| ||||||| |||| || |||||    
T  16779517 aaaatttctctttcaacttgaatggtactttcgtatcacataaaacatctgagtctcttctccatttcaaccactcaaattgaatttgatggtttacata 16779418  T
Q  146 t 146  Q
    |    
T  16779417 t 16779417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 251
Target Start/End: Complemental strand, 24178305 - 24178148
Alignment:
Q  100 ctcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct--gtc-ttttgtac-aaagacccaagctatttaaa-cttgt 194  Q
    |||||||| ||||||||||||||||||||||  ||||  | |||| ||||| |||||||  ||| |||||||| || |||||||| | |||||| | |||    
T  24178305 ctcttctccatttcaaccacccaacttgaatatgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagatctttaaaccgtgt 24178206  T
Q  195 aacttgtggcatga-atgatctctaactttcacctacaaggtagagatacttcacctt 251  Q
    |||||  || |||| |||||||| ||||||||| | |||||||||  |||||| ||||    
T  24178205 aacttagggtatgatatgatctccaactttcacttccaaggtagacctacttctcctt 24178148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 158
Target Start/End: Complemental strand, 36200563 - 36200505
Alignment:
Q  100 ctcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct 158  Q
    |||||||| |||||||||||||||||| |||  ||||||| |||||||||  |||||||    
T  36200563 ctcttctccatttcaaccacccaacttaaatatgatgatttacatatgctactatttct 36200505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 37124409 - 37124361
Alignment:
Q  42 caataaaatttctccttcaacatgagtggtactttcatatcacgtaaaa 90  Q
    |||| |||||||||||| ||| |||||||||||||||| |||| |||||    
T  37124409 caatgaaatttctcctttaacttgagtggtactttcatttcacataaaa 37124361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 251
Target Start/End: Original strand, 1777516 - 1777673
Alignment:
Q  100 ctcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatt--tctgtc-ttttgtac-aaagacccaagctattt-aaacttgt 194  Q
    |||||||| |||||||||||||| ||||||| |||||| | |||| ||||| ||||  |||||| |||||||| || |||||||| ||||| |||| |||    
T  1777516 ctcttctccatttcaaccacccagcttgaatacgatgacttacatttgcttctatttctctgtcattttgtacgaaggacccaagatatttaaaacgtgt 1777615  T
Q  195 aacttgtggcatga-atgatctctaactttcacctacaaggtagagatacttcacctt 251  Q
    |||||| || |||| ||||| || ||||||||||| |||||||||  |||||| ||||    
T  1777616 aacttggggtatgatatgatttccaactttcacctccaaggtagacctacttctcctt 1777673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 251
Target Start/End: Original strand, 23906802 - 23906959
Alignment:
Q  100 ctcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct--gtc-ttttgtac-aaagacccaagctatttaaa-cttgt 194  Q
    |||||||| |||||||||||||| ||||||| |||||  | |||| ||||| |||||||  ||| |||||||| || |||||||| |||||||| | |||    
T  23906802 ctcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagatatttaaaccgtgt 23906901  T
Q  195 aacttgtggcatga-atgatctctaactttcacctacaaggtagagatacttcacctt 251  Q
    |||||| || |||| |||||||| ||||||||||| |||||||||  |||||| ||||    
T  23906902 aacttggggtatgatatgatctccaactttcacctccaaggtagacctacttctcctt 23906959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 100 - 251
Target Start/End: Complemental strand, 436010 - 435853
Alignment:
Q  100 ctcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct--gtc-ttttgtacaaag-acccaagctatttaaact-tgt 194  Q
    |||||||| ||||||||||| || ||||||| |||||| | |||| ||||| |||||||  ||| |||| ||| ||| ||||||| |||||||||  |||    
T  436010 ctcttctccatttcaaccactcagcttgaatacgatgacttacatctgcttctatttctccgtcattttatacgaaggacccaagatatttaaaccgtgt 435911  T
Q  195 aacttgtggcatga-atgatctctaactttcacctacaaggtagagatacttcacctt 251  Q
    |||||| || |||| |||||||| ||||||||||| |||||||||  |||||| ||||    
T  435910 aacttggggtatgatatgatctccaactttcacctccaaggtagacctacttctcctt 435853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 99 - 238
Target Start/End: Complemental strand, 33226991 - 33226846
Alignment:
Q  99 actcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct--gtc-ttttgtac-aaagacccaagctatttaaa-cttg 193  Q
    ||||||||| |||||||||||||| |||||||  ||||  | |||| ||||| |||||||  ||| |||||||| || |||||||| |||||||| | ||    
T  33226991 actcttctccatttcaaccacccagcttgaatatgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagatatttaaaccgtg 33226892  T
Q  194 taacttgtggcatga-atgatctctaactttcacctacaaggtaga 238  Q
    ||||||| || |||| |||||||| ||||||||||| |||||||||    
T  33226891 taacttggggtatgatatgatctccaactttcacctccaaggtaga 33226846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 254
Target Start/End: Original strand, 17666539 - 17666696
Alignment:
Q  100 ctcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct--gtc-ttttgtacaaag-acccaagctatttaaact-tgt 194  Q
    |||||||| |||||||| | ||||||||||| |||||||| |||| |||||||||||||  | | ||||||||   | ||||||| |||||||||| |||    
T  17666539 ctcttctccatttcaacaatccaacttgaatacgatgatttacatttgcttttatttcttcgacattttgtactttgaacccaagatatttaaactgtgt 17666638  T
Q  195 aacttgtggcatga-atgatctctaactttcacctacaaggtagagatacttcaccttttg 254  Q
    |||||||   |||| |||||||||||| |||||||  ||| |||| ||||||| |||||||    
T  17666639 aacttgt---atgatatgatctctaacgttcacctctaagatagaaatacttcgccttttg 17666696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 236
Target Start/End: Original strand, 27450674 - 27450816
Alignment:
Q  100 ctcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct--gtc-ttttgtac-aaagacccaagctatttaaact-tgt 194  Q
    |||||||| |||||||||||||| ||||||| |||||||| |||| ||||| |||||||   || ||||| || |  |||||||| ||| |||||| |||    
T  27450674 ctcttctccatttcaaccacccagcttgaatacgatgatttacatctgcttctatttctccatcattttgcactatggacccaagatatgtaaactgtgt 27450773  T
Q  195 aacttgtggcatga-atgatctctaactttcacctacaaggta 236  Q
    |||||| || |||| |||||||| ||||||||||| |||||||    
T  27450774 aacttggggtatgatatgatctccaactttcacctccaaggta 27450816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 44 - 158
Target Start/End: Complemental strand, 3273259 - 3273145
Alignment:
Q  44 ataaaatttctccttcaacatgagtggtactttcatatcacgtaaaaacacttaaactcttctctatttcaaccacccaacttgaattcgatgattaaca 143  Q
    |||||||||| |||||||||| | || ||||||| |||||| |||||  | | |  ||| |||| |||||||||| ||||||||||||||||| || | |    
T  3273259 ataaaatttccccttcaacatcaatgatactttcgtatcacataaaacaaatgaggctcatctccatttcaaccatccaacttgaattcgatggtttata 3273160  T
Q  144 tatgcttttatttct 158  Q
    | ||||| |||||||    
T  3273159 tttgcttctatttct 3273145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 100 - 251
Target Start/End: Original strand, 31960315 - 31960472
Alignment:
Q  100 ctcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct--gtc-ttttgtac-aaagacccaagctatttaaa-cttgt 194  Q
    |||||||| |||||||||||||| |||||||  ||||  | |||| ||||| |||||||  ||| |||||||| || |||||||| |||||||| | |||    
T  31960315 ctcttctccatttcaaccacccagcttgaatatgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagatatttaaaccgtgt 31960414  T
Q  195 aacttgtggcatga-atgatctctaactttcacctacaaggtagagatacttcacctt 251  Q
    || ||| || |||| |||||||| ||||||||||| |||||||||  |||||| ||||    
T  31960415 aaattggggtatgatatgatctccaactttcacctccaaggtagacctacttctcctt 31960472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 100 - 251
Target Start/End: Original strand, 48174594 - 48174751
Alignment:
Q  100 ctcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct--gtct-tttgtacaaag-acccaagctatttaaact-tgt 194  Q
    |||||||| |||||||||||| | ||||||| |||||  | |||| ||||| |||||||  |||  ||||||| ||| ||||||| |||||||||  |||    
T  48174594 ctcttctccatttcaaccacctagcttgaatacgatggcttacatctgcttctatttctccgtcactttgtacgaaggacccaagatatttaaaccgtgt 48174693  T
Q  195 aacttgtggcatga-atgatctctaactttcacctacaaggtagagatacttcacctt 251  Q
    |||||| || |||| |||||||| ||||||||||| |||||||||  |||||| ||||    
T  48174694 aacttggggtatgatatgatctccaactttcacctccaaggtagacctacttctcctt 48174751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 100 - 251
Target Start/End: Complemental strand, 53707575 - 53707418
Alignment:
Q  100 ctcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct--gtc-ttttgtac-aaagacccaagctattta-aacttgt 194  Q
    |||||||| |||||||||||||| ||||||| |||||  | |||| ||||| |||||||  ||| |||||||| || |||||||| |||||| | | |||    
T  53707575 ctcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagatatttagaccgtgt 53707476  T
Q  195 aacttgtggcatga-atgatctctaactttcacctacaaggtagagatacttcacctt 251  Q
    |||||| || |||| |||||||  ||||||||||| |||||||||  |||||| ||||    
T  53707475 aacttggggtatgatatgatcttcaactttcacctccaaggtagacctacttctcctt 53707418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 100 - 251
Target Start/End: Complemental strand, 56375071 - 56374914
Alignment:
Q  100 ctcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct--gtc-ttttgtac-aaagacccaagctatttaaa-cttgt 194  Q
    |||||||| |||||||||||||| ||||||| |||||  | | || ||||| |||||||  ||| |||||||| || |||||||| |||||||| | |||    
T  56375071 ctcttctcaatttcaaccacccagcttgaatacgatggcttatatctgcttctatttctccgtcattttgtacgaaggacccaagatatttaaaccgtgt 56374972  T
Q  195 aacttgtggcatga-atgatctctaactttcacctacaaggtagagatacttcacctt 251  Q
    |||||| || |||| ||| |||| ||||||||||| |||||||||  |||||| ||||    
T  56374971 aacttggggtatgatatgctctccaactttcacctccaaggtagacctacttctcctt 56374914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 144
Target Start/End: Complemental strand, 35690087 - 35690042
Alignment:
Q  99 actcttctctatttcaaccacccaacttgaattcgatgattaacat 144  Q
    ||||||||| |||||||||||||||||||||| |||||||| ||||    
T  35690087 actcttctccatttcaaccacccaacttgaatacgatgatttacat 35690042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 103 - 251
Target Start/End: Original strand, 48623031 - 48623185
Alignment:
Q  103 ttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct--gtc-ttttgtac-aaagacccaagctatttaaa-cttgtaac 197  Q
    ||||| |||||||||||||| ||||||| |||||  | |||| ||||| |||||||  ||| |||||||| || |||||||| |||||||| | |||||     
T  48623031 ttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagatatttaaatcgtgtaat 48623130  T
Q  198 ttgtggcatga-atgatctctaactttcacctacaaggtagagatacttcacctt 251  Q
    ||| || |||| ||| |||| ||||||||||| |||||||||  |||||| ||||    
T  48623131 ttggggtatgatatgctctccaactttcacctccaaggtagacctacttctcctt 48623185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 41009855 - 41009912
Alignment:
Q  101 tcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct 158  Q
    ||||||| |||||||||||| ||||||||| ||| |||| |||| ||||| |||||||    
T  41009855 tcttctccatttcaaccacctaacttgaatacgaagatttacatttgcttctatttct 41009912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 255
Target Start/End: Original strand, 47265785 - 47265866
Alignment:
Q  176 ccaagctatttaaact-tgtaacttgtggcatga-atgatctctaactttcacctacaaggtagagatacttcaccttttgc 255  Q
    ||||| |||||||||| ||||||||| || |||| |||| ||| ||||||||||| |||||||||  |||||| ||||||||    
T  47265785 ccaagatatttaaactatgtaacttggggtatgatatgacctccaactttcacctccaaggtagacctacttctccttttgc 47265866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 100 - 238
Target Start/End: Original strand, 2771 - 2915
Alignment:
Q  100 ctcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct--gtc-ttttgtac-aaagacccaagctatttaaa-cttgt 194  Q
    |||||||| |||||||||||||| ||||||| |||||| | |||| ||||| |||||||  ||| |||||||| || |||||||| |||||||| | |||    
T  2771 ctcttctccatttcaaccacccagcttgaatacgatgacttacatctgcttctatttcttcgtcattttgtacgaaggacccaagatatttaaaccgtgt 2870  T
Q  195 aacttgtggcatga-atgatctctaactttcacctacaaggtaga 238  Q
    |||||| || |||| |||||||| ||||||||||| ||| |||||    
T  2871 aacttggggtatgatatgatctccaactttcacctccaatgtaga 2915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 255
Target Start/End: Complemental strand, 5631600 - 5631437
Alignment:
Q  99 actcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct--gtc-ttttgtac-aaagaccc-aagctatttaaa-ctt 192  Q
    ||||||||| |||||||||||||| ||||||| |||||||| |||| ||||| |||||||  ||| |||||||| |  ||||| ||  |||||||| | |    
T  5631600 actcttctccatttcaaccacccagcttgaatacgatgatttacatctgcttctatttctccgtcattttgtactatggacccaaaaatatttaaaccgt 5631501  T
Q  193 gtaacttgtggcatga-atgatctctaactttcacctacaaggtagagatacttcaccttttgc 255  Q
    |||||||| || |||| |||||||||||||||||||| |||||||||   ||||| ||||||||    
T  5631500 gtaacttggggtatgatatgatctctaactttcacctgcaaggtagacccacttctccttttgc 5631437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 236
Target Start/End: Complemental strand, 9706557 - 9706415
Alignment:
Q  100 ctcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct--gtc-ttttgta-caaagacccaagctatttaaa-cttgt 194  Q
    |||||||| |||||||||||||| ||||||| |||||||| |||  ||||| |||||||   || ||||||| ||  |||||||| |||||||| | |||    
T  9706557 ctcttctccatttcaaccacccagcttgaatacgatgatttacacctgcttctatttctccatcattttgtaccatggacccaagatatttaaaccgtgt 9706458  T
Q  195 aacttgtggcatga-atgatctctaactttcacctacaaggta 236  Q
    |||||| || |||| |||||||| |||||||| || |||||||    
T  9706457 aacttggggtatgatatgatctccaactttcatctccaaggta 9706415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 135
Target Start/End: Complemental strand, 30679255 - 30679220
Alignment:
Q  100 ctcttctctatttcaaccacccaacttgaattcgat 135  Q
    ||||||||||||||||||||||||||||||| ||||    
T  30679255 ctcttctctatttcaaccacccaacttgaatacgat 30679220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 255
Target Start/End: Original strand, 10100358 - 10100519
Alignment:
Q  100 ctcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct--gtc-ttttgtacaaag-acccaagctatttaaact-tgt 194  Q
    |||||||| ||| |||||||||| ||||||| |||||||| | ||  |||| |||||||  | | |||||||| | | ||||||| |||||||||  |||    
T  10100358 ctcttctccattccaaccacccagcttgaatacgatgatttatatcagcttctatttctccgacattttgtactatggacccaagatatttaaaccgtgt 10100457  T
Q  195 aacttgtggcatga-atgatctctaactttcacctacaaggtagagatacttcaccttttgc 255  Q
    |||||| || |||| |||||||| ||||||||||| |||||||||  |||||| | ||||||    
T  10100458 aacttggggtatgatatgatctccaactttcacctccaaggtagacctacttctcattttgc 10100519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 156
Target Start/End: Original strand, 20428137 - 20428193
Alignment:
Q  100 ctcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttattt 156  Q
    |||||||| |||||||||||||| |||| || |||||||| |||| ||||| |||||    
T  20428137 ctcttctccatttcaaccacccagcttggatacgatgatttacatctgcttctattt 20428193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 251
Target Start/End: Complemental strand, 31249 - 31092
Alignment:
Q  100 ctcttctctatttcaaccacccaacttgaattcgatgattaacatatgcttttatttct--gtc-ttttgtac-aaagacccaagctatttaaa-cttgt 194  Q
    |||||||| |||||||||||||| ||||||| |||||    |||| | |||||||||||  ||| |||||||| || |||||||| | |||||| | |||    
T  31249 ctcttctccatttcaaccacccagcttgaatacgatggcctacatctacttttatttctccgtcattttgtacgaaggacccaagatgtttaaaccgtgt 31150  T
Q  195 aacttgtggcatga-atgatctctaactttcacctacaaggtagagatacttcacctt 251  Q
    |||||| || |||| |||||||| ||||||||| | |||||||||  |||||| ||||    
T  31149 aacttggggtatgatatgatctccaactttcacttccaaggtagacctacttctcctt 31092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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