View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20744_high_10 (Length: 347)

Name: NF20744_high_10
Description: NF20744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20744_high_10
NF20744_high_10
[»] chr1 (6 HSPs)
chr1 (15-204)||(46344664-46344853)
chr1 (15-203)||(46451704-46451892)
chr1 (15-204)||(46462671-46462860)
chr1 (15-200)||(46466097-46466282)
chr1 (15-200)||(46471302-46471487)
chr1 (199-334)||(46453141-46453277)


Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-100; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 15 - 204
Target Start/End: Original strand, 46344664 - 46344853
Alignment:
Q  15 aacacacttgtccccaagaaccatggaattccaccaccagatatttgatcaaacaaaccctgtccatttgctatttccacccccattgctgctacaaaac 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  46344664 aacacacttgtccccaagaaccatggaattccaccaccagatatttgatcaaacaaaccctgtccttttgctatttccacccccattgctgctacaaaac 46344763  T
Q  115 caatcatagccaaccttccattgattctttcaggtgctggcccaccaaaagccatcaaatccgaaaactttgtgctcatctgccatattt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46344764 caatcatagccaaccttccattgattctttcaggtgctggcccaccaaaagccatcaaatccgaaaactttgtgctcatctgccatattt 46344853  T

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Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 15 - 203
Target Start/End: Complemental strand, 46451892 - 46451704
Alignment:
Q  15 aacacacttgtccccaagaaccatggaattccaccaccagatatttgatcaaacaaaccctgtccatttgctatttccacccccattgctgctacaaaac 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  46451892 aacacacttgtccccaagaaccatggaattccaccaccagatatttgatcaaacaaaccctgtccttttgctatttccacccccattgctgctacaaaac 46451793  T
Q  115 caatcatagccaaccttccattgattctttcaggtgctggcccaccaaaagccatcaaatccgaaaactttgtgctcatctgccatatt 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46451792 caatcatagccaaccttccattgattctttcaggtgctggcccaccaaaagccatcaaatccgaaaactttgtgctcatctgccatatt 46451704  T

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Target: chr1; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 15 - 204
Target Start/End: Complemental strand, 46462860 - 46462671
Alignment:
Q  15 aacacacttgtccccaagaaccatggaattccaccaccagatatttgatcaaacaaaccctgtccatttgctatttccacccccattgctgctacaaaac 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  46462860 aacacacttgtccccaagaaccatggaattccaccaccagatatttgatcaaacaaaccctgtccttttgctatttccacccccattgctgctacaaaac 46462761  T
Q  115 caatcatagccaaccttccattgattctttcaggtgctggcccaccaaaagccatcaaatccgaaaactttgtgctcatctgccatattt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  46462760 caatcatagccaaccttccattgattctttcaggtgctggcccaccaaaagccatcaaatccgaaaattttgtgctcatctgccatattt 46462671  T

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Target: chr1; HSP #4
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 15 - 200
Target Start/End: Complemental strand, 46466282 - 46466097
Alignment:
Q  15 aacacacttgtccccaagaaccatggaattccaccaccagatatttgatcaaacaaaccctgtccatttgctatttccacccccattgctgctacaaaac 114  Q
    |||||||||||   |||||||||||| ||||||||||||||||||||||| ||||||||||| || ||||||| ||||||||||||||| | ||||||||    
T  46466282 aacacacttgtatacaagaaccatgggattccaccaccagatatttgatcgaacaaaccctgcccttttgctaattccacccccattgcagatacaaaac 46466183  T
Q  115 caatcatagccaaccttccattgattctttcaggtgctggcccaccaaaagccatcaaatccgaaaactttgtgctcatctgccat 200  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  46466182 caatcatagccaaccttccattgattctttcaggtgctgccccaccaaaagccatcaaatccgaaaactttgtgcttatctgccat 46466097  T

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Target: chr1; HSP #5
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 15 - 200
Target Start/End: Complemental strand, 46471487 - 46471302
Alignment:
Q  15 aacacacttgtccccaagaaccatggaattccaccaccagatatttgatcaaacaaaccctgtccatttgctatttccacccccattgctgctacaaaac 114  Q
    |||||||||||   |||||||||||| ||||||||||||||||||||||| ||||||||||| || ||||||| ||||||||||||||| | ||||||||    
T  46471487 aacacacttgtatacaagaaccatgggattccaccaccagatatttgatcgaacaaaccctgcccttttgctaattccacccccattgcagatacaaaac 46471388  T
Q  115 caatcatagccaaccttccattgattctttcaggtgctggcccaccaaaagccatcaaatccgaaaactttgtgctcatctgccat 200  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  46471387 caatcatagccaaccttccattgattctttcaggtgctgccccaccaaaagccatcaaatccgaaaactttgtgcttatctgccat 46471302  T

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Target: chr1; HSP #6
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 199 - 334
Target Start/End: Original strand, 46453141 - 46453277
Alignment:
Q  199 atatttctttgg-tattcattttaccatctacgaggagttctttactgctatttatgctattgaaatagcttatttgtataattggcaaagcgtttggct 297  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46453141 atatttctttgggtattcattttaccatctacgaggagttctttactgctatttatgctattgaaatagcttatttgtataattggcaaagcgtttggct 46453240  T
Q  298 tgagtgttgttgattctaaggtggaggaattgttcgt 334  Q
    |||||||||||||||||||||||||||||||||||||    
T  46453241 tgagtgttgttgattctaaggtggaggaattgttcgt 46453277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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