View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20744_high_13 (Length: 297)
Name: NF20744_high_13
Description: NF20744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20744_high_13 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 10 - 297
Target Start/End: Original strand, 554587 - 554878
Alignment:
| Q |
10 |
attattcttattgtttgccactatacctttctgatacactggtatttgcaaatgattcggaagaacatgcaattctctataatatgagggataatagtgt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
554587 |
attattcttattgtttgccactatacctttctgatacactggtatttgcaaacgattcggaagaacatgcaattctctataatatgagggataatagtgt |
554686 |
T |
|
| Q |
110 |
agagagaacgagtattacaattccaaaatcattgtggatggaggccaaggattatgttgaaagcttagtttggtatagttgaaagtaagttcctctttga |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
554687 |
agagagaacgagtattacaattccaaaatcattgtggatggaggccaaggattatgttgaaagcttagtttggtatagttgaaagtaagttcctctttga |
554786 |
T |
|
| Q |
210 |
ca----atttatttgtttgaatttaaattaattatattcatgtgtgttgtataaaatgttttgttatgactttattgtattgttaaatgttt |
297 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
554787 |
caatttatttatttgtttgaatttaaattaattatattcatgtgtgttgtataaaatgttttgttatgacttgattgtattgttaaatgttt |
554878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 158 - 229
Target Start/End: Complemental strand, 5436638 - 5436567
Alignment:
| Q |
158 |
ggattatgttgaaagcttagtttggtatagttgaaagtaagttcctctttgacaatttatttgtttgaattt |
229 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||| |||||||||||||||| |||| ||| |||||||||||| |
|
|
| T |
5436638 |
ggattatgttgaaagcttggtttggtatcgttaaaagtaagttcctcttcaacaagttacttgtttgaattt |
5436567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 11970792 - 11970725
Alignment:
| Q |
162 |
tatgttgaaagcttagtttggtatagttgaaagtaagttcctctttgacaatttatttgtttgaattt |
229 |
Q |
| |
|
|||||||||||||| |||| |||| |||||||||||||| |||| ||||||||| |||||||||||| |
|
|
| T |
11970792 |
tatgttgaaagcttggttttgtattgttgaaagtaagtttctctacgacaatttacttgtttgaattt |
11970725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 11981490 - 11981426
Alignment:
| Q |
165 |
gttgaaagcttagtttggtatagttgaaagtaagttcctctttgacaatttatttgtttgaattt |
229 |
Q |
| |
|
||||||||||| |||| |||| |||||||||||||| |||| |||||||| |||||||||||| |
|
|
| T |
11981490 |
gttgaaagcttggtttcgtattgttgaaagtaagtttctctacaacaatttacttgtttgaattt |
11981426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 20405644 - 20405714
Alignment:
| Q |
155 |
caaggattatgttgaaagcttagtttggtatagttgaaagtaagttcctctttgacaatttatttgtttga |
225 |
Q |
| |
|
||||||||||||||||||||| |||| ||| || |||||||||| |||||||||||||| |||||||| |
|
|
| T |
20405644 |
caaggattatgttgaaagcttggtttcatatccttaaaagtaagtttgtctttgacaatttacttgtttga |
20405714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 20410924 - 20410994
Alignment:
| Q |
155 |
caaggattatgttgaaagcttagtttggtatagttgaaagtaagttcctctttgacaatttatttgtttga |
225 |
Q |
| |
|
||||||||||||||||||||| |||| ||| || |||||||||| |||||||||||||| |||||||| |
|
|
| T |
20410924 |
caaggattatgttgaaagcttggtttcatatccttaaaagtaagtttgtctttgacaatttacttgtttga |
20410994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 22011107 - 22011159
Alignment:
| Q |
155 |
caaggattatgttgaaagcttagtttggtatagttgaaagtaagttcctcttt |
207 |
Q |
| |
|
|||| ||||||||||||||||||||| || | |||||||||||||||||||| |
|
|
| T |
22011107 |
caagaattatgttgaaagcttagttttgtgtcattgaaagtaagttcctcttt |
22011159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 220
Target Start/End: Original strand, 22028877 - 22028937
Alignment:
| Q |
160 |
attatgttgaaagcttagtttggtatagttgaaagtaagttcctctttgacaatttatttg |
220 |
Q |
| |
|
|||||||||||||| |||||| || | ||||||||||||||||||||| | ||||||||| |
|
|
| T |
22028877 |
attatgttgaaagcctagttttgtgtcattgaaagtaagttcctctttgtcgatttatttg |
22028937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 206
Target Start/End: Original strand, 29874821 - 29874875
Alignment:
| Q |
152 |
ggccaaggattatgttgaaagcttagtttggtatagttgaaagtaagttcctctt |
206 |
Q |
| |
|
||||| ||||||||||||||||||||||| | | |||||||||||||| ||||| |
|
|
| T |
29874821 |
ggccatggattatgttgaaagcttagttttgatttgttgaaagtaagtttctctt |
29874875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 6864627 - 6864559
Alignment:
| Q |
161 |
ttatgttgaaagcttagtttggtatagttgaaagtaagttcctctttgacaatttatttgtttgaattt |
229 |
Q |
| |
|
||||||||||||||| |||| || | ||||||||||||||||| || | ||||| |||||||||||| |
|
|
| T |
6864627 |
ttatgttgaaagcttggtttcgttttgttgaaagtaagttccttttcagctatttacttgtttgaattt |
6864559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 22064351 - 22064423
Alignment:
| Q |
157 |
aggattatgttgaaagcttagtttggtatagttgaaagtaagttcctctttgacaatttatttgtttgaattt |
229 |
Q |
| |
|
||||||||| |||||| || |||| |||| |||||||||||||| || | ||| ||||| |||||||||||| |
|
|
| T |
22064351 |
aggattatgatgaaaggttggtttcgtattgttgaaagtaagtttctttacgacgatttacttgtttgaattt |
22064423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University