View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20744_high_17 (Length: 235)
Name: NF20744_high_17
Description: NF20744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20744_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 47 - 220
Target Start/End: Original strand, 4949613 - 4949786
Alignment:
| Q |
47 |
tggataccgttgaagccattgagagcagcgcgaatgatatccttagtgagaatctcataaacactcgaattcgagcaagattcatcgaatgcatgatctg |
146 |
Q |
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| T |
4949613 |
tggataccgttgaagccattgagagcagcgagaatgatatccttagtgagaatctcataaacactcgaattcgagcaagattcatcgaatacatgatctg |
4949712 |
T |
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| Q |
147 |
nnnnnnnnnnnnnnnnnnnnnntcgaaggtgtaaaatataagataaaatttaggaagaagacgaaattgataat |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4949713 |
aaaaagaagaaaaaaaacaaaatcgaaggtgtaaaatataagataaaatttaggaagaagacgaaattgataat |
4949786 |
T |
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