View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20744_high_8 (Length: 358)

Name: NF20744_high_8
Description: NF20744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20744_high_8
NF20744_high_8
[»] chr2 (4 HSPs)
chr2 (13-309)||(8019915-8020211)
chr2 (172-308)||(22391284-22391420)
chr2 (309-344)||(8019848-8019883)
chr2 (17-75)||(22391574-22391632)
[»] chr3 (40 HSPs)
chr3 (153-308)||(28132105-28132260)
chr3 (153-308)||(28510616-28510771)
chr3 (153-308)||(28147889-28148044)
chr3 (153-308)||(28183922-28184077)
chr3 (153-308)||(27975507-27975662)
chr3 (153-308)||(28081898-28082053)
chr3 (156-308)||(28002333-28002485)
chr3 (153-308)||(28159358-28159513)
chr3 (153-308)||(28481444-28481599)
chr3 (153-308)||(27918527-27918682)
chr3 (153-255)||(28053683-28053785)
chr3 (153-255)||(28064108-28064210)
chr3 (153-308)||(27460990-27461142)
chr3 (153-308)||(28035583-28035738)
chr3 (206-308)||(17746167-17746269)
chr3 (206-308)||(19047487-19047589)
chr3 (153-308)||(11418886-11419041)
chr3 (206-308)||(27392230-27392332)
chr3 (213-308)||(12146179-12146274)
chr3 (208-308)||(18026466-18026566)
chr3 (206-308)||(27347569-27347671)
chr3 (15-77)||(28159634-28159696)
chr3 (14-84)||(28148170-28148242)
chr3 (15-76)||(28184199-28184260)
chr3 (224-308)||(26114998-26115082)
chr3 (224-308)||(26142310-26142394)
chr3 (224-308)||(26210106-26210190)
chr3 (213-308)||(27376362-27376457)
chr3 (24-151)||(28035806-28035932)
chr3 (224-308)||(26180615-26180699)
chr3 (19-79)||(28481226-28481286)
chr3 (19-79)||(28510407-28510467)
chr3 (224-303)||(26237350-26237429)
chr3 (15-82)||(28053934-28054000)
chr3 (15-82)||(28064359-28064425)
chr3 (224-308)||(26131578-26131662)
chr3 (19-75)||(28082191-28082247)
chr3 (24-154)||(28002553-28002682)
chr3 (258-308)||(28481909-28481959)
chr3 (14-78)||(27460800-27460864)
[»] scaffold0257 (3 HSPs)
scaffold0257 (153-308)||(17484-17639)
scaffold0257 (118-154)||(17704-17740)
scaffold0257 (51-83)||(17766-17798)
[»] scaffold0043 (1 HSPs)
scaffold0043 (172-313)||(54687-54828)
[»] chr7 (2 HSPs)
chr7 (153-308)||(8693277-8693432)
chr7 (14-79)||(8693152-8693216)


Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 13 - 309
Target Start/End: Complemental strand, 8020211 - 8019915
Alignment:
Q  13 aatatgtaattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccgtagccaaacttgctagcatataaaccattaatatca 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8020211 aatatgtaattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccgtagccaaacttgctagcatataaaccattaatatca 8020112  T
Q  113 aatatgaagtctgctgttgatgctgaagccagggatagttttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcac 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8020111 aatatgaagtctgctgttgatgctgaagccagggatagttttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcac 8020012  T
Q  213 cttcacttacaaatatttcctctagctcatatgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaaagacatg 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8020011 cttcacttacaaatatttcctctagctcatatgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaaagacatg 8019915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 172 - 308
Target Start/End: Complemental strand, 22391420 - 22391284
Alignment:
Q  172 tacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctcttatgatcagataatttagc 271  Q
    ||||||||| |||||||| || |  ||||| |||||| |  |||||| |||||||||||||||||||| ||||||||| ||||| |  |||   | ||||    
T  22391420 tacaacttttagatttggcatattgactttctgatcaccttcttcacatacaaatatttcctctagcttatatgcttcacttatcactagagcctctagc 22391321  T
Q  272 tcaggaagctctttacatatggagattggaaagacat 308  Q
    |||||||||||||||||||||||||||||||||||||    
T  22391320 tcaggaagctctttacatatggagattggaaagacat 22391284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 309 - 344
Target Start/End: Complemental strand, 8019883 - 8019848
Alignment:
Q  309 gttcctagctttggaaagcatgtttttgaggatttt 344  Q
    ||||||||||||||||||||||||||||||||||||    
T  8019883 gttcctagctttggaaagcatgtttttgaggatttt 8019848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 22391632 - 22391574
Alignment:
Q  17 tgtaattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtacc 75  Q
    |||||||| ||||||||||| |||||||| ||| |||||||||| | | ||||||||||    
T  22391632 tgtaattaattacagccaacatgtaatagatttcaaaaatattggacaaagtgtgtacc 22391574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 136; Significance: 7e-71; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 153 - 308
Target Start/End: Complemental strand, 28132260 - 28132105
Alignment:
Q  153 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctct 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||    
T  28132260 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctaactcgtctgcttctct 28132161  T
Q  253 tatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 308  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  28132160 tatgatcagataatatagctcaggaagctctttacatacggagattggaaagacat 28132105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 153 - 308
Target Start/End: Original strand, 28510616 - 28510771
Alignment:
Q  153 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctct 252  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  28510616 ttggtagattttcaaatattacaagttttagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctaactcatctgcttctct 28510715  T
Q  253 tatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 308  Q
    ||||||||||  | ||||||| |||||||||||| |||||||||||||||||||||    
T  28510716 tatgatcagaacaattagctctggaagctctttagatatggagattggaaagacat 28510771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 153 - 308
Target Start/End: Complemental strand, 28148044 - 28147889
Alignment:
Q  153 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctct 252  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||| |||||||||    
T  28148044 ttggtagattttcaaatattacaagttttagatttggaatctccactttgtgatcatcaaattcacttacaaatatttcctctaactcatctgcttctct 28147945  T
Q  253 tatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 308  Q
    ||||||||||   ||||||||||||||||||||| |||||||||||||||| ||||    
T  28147944 tatgatcagaacctttagctcaggaagctctttagatatggagattggaaacacat 28147889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 153 - 308
Target Start/End: Complemental strand, 28184077 - 28183922
Alignment:
Q  153 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctct 252  Q
    |||||||||||||||||| ||||  ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  28184077 ttggtagattttcaaatactacacattctagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctccagctcatctgcttctct 28183978  T
Q  253 tatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 308  Q
    ||| ||||||  ||||||||||||||||||||||||||||||||||||||| ||||    
T  28183977 tatcatcagaacatttagctcaggaagctctttacatatggagattggaaacacat 28183922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 153 - 308
Target Start/End: Complemental strand, 27975662 - 27975507
Alignment:
Q  153 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctct 252  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  27975662 ttggtagattttcaaatattacaactatcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcagctgcttctct 27975563  T
Q  253 tatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 308  Q
    ||| |  |||   | ||||||| |||||||||||||||||||||||||||| ||||    
T  27975562 tatcaagagaacctctagctcaagaagctctttacatatggagattggaaacacat 27975507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 153 - 308
Target Start/End: Complemental strand, 28082053 - 28081898
Alignment:
Q  153 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctct 252  Q
    |||| ||||||||||||| ||||| |   |||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||    
T  28082053 ttggaagattttcaaatactacaaatcgtagatatggaatctccactttgtgatcatcaccttcgcttacaaatatttcctctaactcatctgcttctct 28081954  T
Q  253 tatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 308  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  28081953 tatgatcagataatttagctcaggaagctctttatatacggagattggaaagacat 28081898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 156 - 308
Target Start/End: Complemental strand, 28002485 - 28002333
Alignment:
Q  156 gtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctcttat 255  Q
    ||||||||||||||| ||||| ||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||| | ||||||||||||    
T  28002485 gtagattttcaaatactacaaattttagatttggaatctcgactttgtgatcatcaccttcacttccaaatatttcctctacctcgtctgcttctcttat 28002386  T
Q  256 gatcagataatttagctcaggaagctctttacatatggagattggaaagacat 308  Q
    | |||||  ||||||||||||||||||||||||||||||||||||||| ||||    
T  28002385 ggtcagaacatttagctcaggaagctctttacatatggagattggaaacacat 28002333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 153 - 308
Target Start/End: Complemental strand, 28159513 - 28159358
Alignment:
Q  153 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctct 252  Q
    |||||||||||||||||| ||||  ||  ||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||| || ||||||    
T  28159513 ttggtagattttcaaatactacacattctagatttggaatcttcactttctgatcatcaccttcaattacaaatatttcctctagctcatctgattctct 28159414  T
Q  253 tatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 308  Q
    ||| ||||||  ||||||||||||||||||||||||||||||||||||||| ||||    
T  28159413 tatcatcagaacatttagctcaggaagctctttacatatggagattggaaatacat 28159358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 153 - 308
Target Start/End: Original strand, 28481444 - 28481599
Alignment:
Q  153 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctct 252  Q
    |||||||||||||||||| ||||| ||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||| | ||| | |||||||||    
T  28481444 ttggtagattttcaaatactacaaattttagatttggaatctcgactttgtgatcatcaccttcacttccaaatatttcctcgaactcgtctgcttctct 28481543  T
Q  253 tatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 308  Q
    |||||| |||  ||||||||  |||||||||||| |||||||||||||||| ||||    
T  28481544 tatgatgagaacatttagctttggaagctctttagatatggagattggaaacacat 28481599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 153 - 308
Target Start/End: Complemental strand, 27918682 - 27918527
Alignment:
Q  153 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctct 252  Q
    |||||||||||||||||| || |  ||  |||||||||||||||||||| ||||||||||||||| || |||||||||| || ||||||| |||||||||    
T  27918682 ttggtagattttcaaatactagatattctagatttggaatctccactttctgatcatcaccttcatttgcaaatatttcatccagctcatctgcttctct 27918583  T
Q  253 tatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 308  Q
    ||| |  ||| | |||||||||||||| ||||||||||||||||||||||||||||    
T  27918582 tatcactagacactttagctcaggaaggtctttacatatggagattggaaagacat 27918527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 153 - 255
Target Start/End: Complemental strand, 28053785 - 28053683
Alignment:
Q  153 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctct 252  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  28053785 ttggtagattttcaaatactacaagttttagatttggaatctccactttgtgatcatcactttcacttacaaatatttcctctagctcatctgcttctct 28053686  T
Q  253 tat 255  Q
    |||    
T  28053685 tat 28053683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 153 - 255
Target Start/End: Complemental strand, 28064210 - 28064108
Alignment:
Q  153 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctct 252  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  28064210 ttggtagattttcaaatactacaagttttagatttggaatctccactttgtgatcatcactttcacttacaaatatttcctctagctcatctgcttctct 28064111  T
Q  253 tat 255  Q
    |||    
T  28064110 tat 28064108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 153 - 308
Target Start/End: Original strand, 27460990 - 27461142
Alignment:
Q  153 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctct 252  Q
    ||||||||||| |||||| ||||| ||| |||||||||||||||| ||| ||||||||   |||||||||||||||||||||||||||   |||||||||    
T  27460990 ttggtagatttacaaatactacaagttttagatttggaatctccagtttctgatcatctttttcacttacaaatatttcctctagctc---tgcttctct 27461086  T
Q  253 tatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 308  Q
    |||||| |||   | ||||||||||||||||||||||||||| |||||||||||||    
T  27461087 tatgattagaacctctagctcaggaagctctttacatatggacattggaaagacat 27461142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 153 - 308
Target Start/End: Complemental strand, 28035738 - 28035583
Alignment:
Q  153 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctct 252  Q
    |||||||||||||||| | ||||| ||| |||||||||||||||||||| |||||||||||||||||| |||||||||| || | || || |||||||||    
T  28035738 ttggtagattttcaaacactacaaattttagatttggaatctccactttctgatcatcaccttcacttgcaaatatttcttccatcttatctgcttctct 28035639  T
Q  253 tatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 308  Q
    ||| || |||   | || ||  ||||||||||||||||||||||||||||||||||    
T  28035638 tatcattagagcttctaacttgggaagctctttacatatggagattggaaagacat 28035583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 206 - 308
Target Start/End: Original strand, 17746167 - 17746269
Alignment:
Q  206 tcatcaccttcacttacaaatatttcctctagctcatatgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaaaga 305  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| || |||   | ||||||||||||||||||||||||||||||||||||||    
T  17746167 tcatcaccttcacttccaaatatttcctctagctcatatgcttctcttatcattagaccctctagctcaggaagctctttacatatggagattggaaaga 17746266  T
Q  306 cat 308  Q
    |||    
T  17746267 cat 17746269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 206 - 308
Target Start/End: Original strand, 19047487 - 19047589
Alignment:
Q  206 tcatcaccttcacttacaaatatttcctctagctcatatgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaaaga 305  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| || |||   | ||||||||||||||||||||||||||||||||||||||    
T  19047487 tcatcaccttcacttccaaatatttcctctagctcatatgcttctcttatcattagaccctctagctcaggaagctctttacatatggagattggaaaga 19047586  T
Q  306 cat 308  Q
    |||    
T  19047587 cat 19047589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 153 - 308
Target Start/End: Complemental strand, 11419041 - 11418886
Alignment:
Q  153 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctct 252  Q
    |||| ||||||||||||| || || ||| ||||| ||||||||   ||| |||| |||| |||||||||||||||||||||||||||||| ||| |||||    
T  11419041 ttggcagattttcaaatactaaaaatttaagattcggaatctcgcttttctgatgatcatcttcacttacaaatatttcctctagctcatctgcgtctct 11418942  T
Q  253 tatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 308  Q
    ||| ||||||  || ||||||||||||||||||||| | |||||||||||| ||||    
T  11418941 tatcatcagaacatatagctcaggaagctctttacacagggagattggaaaaacat 11418886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 206 - 308
Target Start/End: Original strand, 27392230 - 27392332
Alignment:
Q  206 tcatcaccttcacttacaaatatttcctctagctcatatgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaaaga 305  Q
    |||||| |||| | ||||||||||||||||||||||| |||||||||||||||||||   |||||||||||||||||||||||||||||||||||||| |    
T  27392230 tcatcaacttcgcatacaaatatttcctctagctcatctgcttctcttatgatcagaacctttagctcaggaagctctttacatatggagattggaaaca 27392329  T
Q  306 cat 308  Q
    |||    
T  27392330 cat 27392332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 213 - 308
Target Start/End: Complemental strand, 12146274 - 12146179
Alignment:
Q  213 cttcacttacaaatatttcctctagctcatatgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 308  Q
    |||||| ||||||||||||||||||||||| |||||||||||| || ||| | | |||||||||||||||||||||||||||||||||||| ||||    
T  12146274 cttcacatacaaatatttcctctagctcatttgcttctcttataattagaaactgtagctcaggaagctctttacatatggagattggaaacacat 12146179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 208 - 308
Target Start/End: Original strand, 18026466 - 18026566
Alignment:
Q  208 atcaccttcacttacaaatatttcctctagctcatatgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaaagaca 307  Q
    |||| |||||| ||||||||||||||||||||  | |||||||  |||||| | |   ||||||||||||||||||||| ||||||||||||||||||||    
T  18026466 atcaacttcacatacaaatatttcctctagcttctctgcttctactatgattataacctttagctcaggaagctctttatatatggagattggaaagaca 18026565  T
Q  308 t 308  Q
    |    
T  18026566 t 18026566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 206 - 308
Target Start/End: Complemental strand, 27347671 - 27347569
Alignment:
Q  206 tcatcaccttcacttacaaatatttcctctagctcatatgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaaaga 305  Q
    |||||||||| || ||||||||||||||| |  || | || |||||||||||| |||   | |||||||||||||||||||||||||||||||||||| |    
T  27347671 tcatcacctttacatacaaatatttcctccaattcttctgattctcttatgattagagcctctagctcaggaagctctttacatatggagattggaaaca 27347572  T
Q  306 cat 308  Q
    |||    
T  27347571 cat 27347569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 28159696 - 28159634
Alignment:
Q  15 tatgtaattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccgt 77  Q
    |||||||| ||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||    
T  28159696 tatgtaataatttacagcaaacatgtaatagtttttaaaaatattggatagagtgtgtaccgt 28159634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 28148242 - 28148170
Alignment:
Q  14 atatgtaattatttacagccaacgtgtaatagtttttaaaa--atattgtatagagtgtgtaccgtagccaaa 84  Q
    |||||||||||||||| |||||| |||||||||||||||||  |||||| ||||||| |||||||||||||||    
T  28148242 atatgtaattatttacggccaacatgtaatagtttttaaaaatatattggatagagtctgtaccgtagccaaa 28148170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 28184260 - 28184199
Alignment:
Q  15 tatgtaattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccg 76  Q
    |||||||| ||||||||| ||| ||||||||||||||||||||||| |||||||||||||||    
T  28184260 tatgtaataatttacagcaaacatgtaatagtttttaaaaatattggatagagtgtgtaccg 28184199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 224 - 308
Target Start/End: Original strand, 26114998 - 26115082
Alignment:
Q  224 aatatttcctctagctcatatgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 308  Q
    |||||||| |||| ||||| |||||||||||| |||| |   ||||||||||||||||||||||| ||||||| |||||||||||    
T  26114998 aatatttcttctaactcatttgcttctcttattatcataacctttagctcaggaagctctttacaaatggagactggaaagacat 26115082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 224 - 308
Target Start/End: Original strand, 26142310 - 26142394
Alignment:
Q  224 aatatttcctctagctcatatgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 308  Q
    ||||||||||||||||||| |||||||||||| | || |   ||||||| ||||| ||||||||| |||||||||||||||||||    
T  26142310 aatatttcctctagctcatttgcttctcttatcaacacagcctttagcttaggaaactctttacaaatggagattggaaagacat 26142394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 224 - 308
Target Start/End: Original strand, 26210106 - 26210190
Alignment:
Q  224 aatatttcctctagctcatatgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 308  Q
    ||||||||||||| ||||| |||||||||||| |||| |  |||||||||||||| ||||||||| ||||||| |||||| ||||    
T  26210106 aatatttcctctaactcatttgcttctcttattatcataacatttagctcaggaaactctttacaaatggagactggaaacacat 26210190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 213 - 308
Target Start/End: Complemental strand, 27376457 - 27376362
Alignment:
Q  213 cttcacttacaaatatttcctctagctcatatgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 308  Q
    |||||| |||||||||||||||||||| || || |||| |||| |  |||   | ||||||||||||||||| |||||||||||||||||||||||    
T  27376457 cttcacatacaaatatttcctctagcttatctgattcttttatcactagactctctagctcaggaagctcttcacatatggagattggaaagacat 27376362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 24 - 151
Target Start/End: Complemental strand, 28035932 - 28035806
Alignment:
Q  24 atttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccgtagccaaacttgctagcatataaaccattaatatcaaatatgaagtc 123  Q
    ||||||||||||| | |||||||||| |||||||||| |||||||| ||||||||| |||||| || || ||||||||||  |||||||  |   ||||     
T  28035932 atttacagccaacatttaatagtttt-aaaaatattggatagagtgcgtaccgtagtcaaactcgccagaatataaaccagaaatatcattttcaaagtt 28035834  T
Q  124 tgctgttgatgctgaagccagggatagt 151  Q
    || |||||||| ||||||||| ||||||    
T  28035833 tgttgttgatgatgaagccagagatagt 28035806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 224 - 308
Target Start/End: Original strand, 26180615 - 26180699
Alignment:
Q  224 aatatttcctctagctcatatgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 308  Q
    ||||||||||||||||||| |||||||||||| | || |   ||||||||||||| ||||||||| ||||||| |||||| ||||    
T  26180615 aatatttcctctagctcatttgcttctcttatcaacataacctttagctcaggaaactctttacaaatggagactggaaacacat 26180699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 28481226 - 28481286
Alignment:
Q  19 taattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccgtag 79  Q
    |||| ||||||||||||| |||||||||||| |||||||||| ||||| ||||||||||||    
T  28481226 taataatttacagccaacatgtaatagttttaaaaaatattggatagaatgtgtaccgtag 28481286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 28510407 - 28510467
Alignment:
Q  19 taattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccgtag 79  Q
    |||| ||||||||||||| |||||||||||| |||||||||| ||||| ||||||||||||    
T  28510407 taataatttacagccaacatgtaatagttttaaaaaatattggatagaatgtgtaccgtag 28510467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 303
Target Start/End: Original strand, 26237350 - 26237429
Alignment:
Q  224 aatatttcctctagctcatatgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaaa 303  Q
    ||||||||||||| ||||| |||||||||||||| || |   ||||||||||||| ||||||||| ||||||| ||||||    
T  26237350 aatatttcctctaactcatttgcttctcttatgaacataacctttagctcaggaaactctttacaaatggagactggaaa 26237429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 28054000 - 28053934
Alignment:
Q  15 tatgtaattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccgtagcca 82  Q
    |||||||| ||||||||||||| | ||||||||||||| ||||||| |||||||||||||| ||||||    
T  28054000 tatgtaataatttacagccaacat-taatagtttttaagaatattggatagagtgtgtaccatagcca 28053934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 28064425 - 28064359
Alignment:
Q  15 tatgtaattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccgtagcca 82  Q
    |||||||| ||||||||||||| | ||||||||||||| ||||||| |||||||||||||| ||||||    
T  28064425 tatgtaataatttacagccaacat-taatagtttttaagaatattggatagagtgtgtaccatagcca 28064359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 224 - 308
Target Start/End: Original strand, 26131578 - 26131662
Alignment:
Q  224 aatatttcctctagctcatatgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 308  Q
    |||||| |||||||||||| |||||| ||||| |||| |   ||||||| ||||| ||||||||| ||||||| |||||||||||    
T  26131578 aatattccctctagctcatttgcttcacttatcatcataacctttagcttaggaaactctttacaaatggagactggaaagacat 26131662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 28082247 - 28082191
Alignment:
Q  19 taattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtacc 75  Q
    |||| |||||||| |||| ||||||||||||||||||||||| ||||| ||||||||    
T  28082247 taataatttacagtcaacatgtaatagtttttaaaaatattggatagaatgtgtacc 28082191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 154
Target Start/End: Complemental strand, 28002682 - 28002553
Alignment:
Q  24 atttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccgtagccaaacttgctagcatataaaccattaatatcaaatatgaagtc 123  Q
    ||||||||||||| | |||||||||| |||||||||| |||||||||||||| | | |||||  |   | |  |||||||  |||||||  |  ||||||    
T  28002682 atttacagccaacatttaatagtttt-aaaaatattggatagagtgtgtaccctcgtcaaaccagaccgaacgtaaaccagaaatatcattttcgaagtc 28002584  T
Q  124 tgctgttgatgctgaagccagggatagtttt 154  Q
    ||||||||||||||||| ||| |||||||||    
T  28002583 tgctgttgatgctgaagtcagagatagtttt 28002553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 308
Target Start/End: Original strand, 28481909 - 28481959
Alignment:
Q  258 tcagataatttagctcaggaagctctttacatatggagattggaaagacat 308  Q
    |||||| || |||||||||||| ||||||||||||||||||||||| ||||    
T  28481909 tcagatcatatagctcaggaaggtctttacatatggagattggaaacacat 28481959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 27460800 - 27460864
Alignment:
Q  14 atatgtaattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccgta 78  Q
    ||||| || |||||||||||||| ||||||  |||| | ||| |||| |||||||||||||||||    
T  27460800 atatgcaaatatttacagccaacatgtaatgattttcagaaagattggatagagtgtgtaccgta 27460864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 104; Significance: 9e-52; HSPs: 3)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 153 - 308
Target Start/End: Complemental strand, 17639 - 17484
Alignment:
Q  153 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctct 252  Q
    |||||||||||||||||| ||||| ||| |||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||| |||||||||    
T  17639 ttggtagattttcaaatactacaaattttagatttggaatctccattttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctct 17540  T
Q  253 tatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 308  Q
    ||| |  ||| | |||||||||||||||||||||||||||||||||||||| ||||    
T  17539 tatcactagacactttagctcaggaagctctttacatatggagattggaaacacat 17484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 154
Target Start/End: Complemental strand, 17740 - 17704
Alignment:
Q  118 gaagtctgctgttgatgctgaagccagggatagtttt 154  Q
    |||||||| |||||||||||||||||| |||||||||    
T  17740 gaagtctggtgttgatgctgaagccagagatagtttt 17704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 83
Target Start/End: Complemental strand, 17798 - 17766
Alignment:
Q  51 aaaaatattgtatagagtgtgtaccgtagccaa 83  Q
    |||||||||| ||||||||||||||||||||||    
T  17798 aaaaatattggatagagtgtgtaccgtagccaa 17766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 172 - 313
Target Start/End: Original strand, 54687 - 54828
Alignment:
Q  172 tacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctcttatgatcagataatttagc 271  Q
    ||||||||||||||||||||  |  ||||| |||||| |  |||||| ||||||||||||||||||||||| ||||||||||||||| |||  || ||||    
T  54687 tacaactttcagatttggaagattgactttctgatcaccttcttcacatacaaatatttcctctagctcatgtgcttctcttatgattagagcatctagc 54786  T
Q  272 tcaggaagctctttacatatggagattggaaagacatgttcc 313  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  54787 tcaggaagctctttacatatggagattggaaagacattttcc 54828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 153 - 308
Target Start/End: Original strand, 8693277 - 8693432
Alignment:
Q  153 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctct 252  Q
    |||| ||||||||||||| ||||  ||  |||||||||||||| ||||| | ||||  |||||||||| |||||||||| || ||||||| |||||||||    
T  8693277 ttggaagattttcaaatactacatattctagatttggaatctcgactttctcatcacgaccttcacttgcaaatatttcatccagctcatctgcttctct 8693376  T
Q  253 tatgatcagataatttagctcaggaagctctttacatatggagattggaaagacat 308  Q
    ||||||||||  |||||||||||||||||| ||||||||||||| |||||||||||    
T  8693377 tatgatcagaacatttagctcaggaagctcgttacatatggagactggaaagacat 8693432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 8693152 - 8693216
Alignment:
Q  14 atatgtaattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccgtag 79  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||    
T  8693152 atatgtaattatttacagccaacgtgtaatag-tttaaaaaatattggatagagtgtgtaccgtag 8693216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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