View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20744_high_9 (Length: 357)
Name: NF20744_high_9
Description: NF20744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20744_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 20552500 - 20552400
Alignment:
| Q |
1 |
gtgcttttacacacttttgaaacaaagatctaatagtaatgaaattttttcagggctctcttagacataaatttgagatcaattagtcctacatttggtg |
100 |
Q |
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| T |
20552500 |
gtgcttttacacacttttgaaacaaagatctaatagtaatgaaattttttcagggctctctcagacataaatttgagatcaattagtcctacatttggtg |
20552401 |
T |
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| Q |
101 |
a |
101 |
Q |
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| T |
20552400 |
a |
20552400 |
T |
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Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 131 - 191
Target Start/End: Original strand, 30695860 - 30695920
Alignment:
| Q |
131 |
taataagcttttaataagctagttagtaattgttttcatttttgctgcatgttgttactat |
191 |
Q |
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| T |
30695860 |
taataagcttttaataagctatttagtaattgttttcatttttgctgcatcttgttgctat |
30695920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 134 - 192
Target Start/End: Original strand, 1215854 - 1215912
Alignment:
| Q |
134 |
taagcttttaataagctagttagtaattgttttcatttttgctgcatgttgttactata |
192 |
Q |
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| T |
1215854 |
taagcttttaataagctacttagtaattgttttcatttttgctgcattttgttgctata |
1215912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 254 - 342
Target Start/End: Complemental strand, 24743809 - 24743718
Alignment:
| Q |
254 |
ggaaggtgaatcagcgtatccaaaactgtgactattaatgatgtcggagaag---ttaattcggagaaattcaactgtgatgctaatgttat |
342 |
Q |
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| T |
24743809 |
ggaaggtaaatcagcgtatccaaaactgtgacgattatcgatgctggagaagttattaattcggagaaaatcaatggtgatgctaatgttat |
24743718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 130
Target Start/End: Original strand, 2509210 - 2509247
Alignment:
| Q |
93 |
atttggtgatgaaattggataaatttttagttaagtta |
130 |
Q |
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| T |
2509210 |
atttggtgatgaaattggataaattttgaattaagtta |
2509247 |
T |
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