View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20744_low_1 (Length: 827)
Name: NF20744_low_1
Description: NF20744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20744_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 596; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 131 - 807
Target Start/End: Original strand, 47893422 - 47894099
Alignment:
| Q |
131 |
aggtagaagccaataattaccattataaagcaagccaagtagacttactcaaaccacagttaaatttttcaaaccacatgcatag---cat--tgatatt |
225 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| | |||| |
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| T |
47893422 |
aggtagaagccaataattaccattataaagcaagccaagtagacttactcaaaccacagttaaatttttcaaaccacatacataggcacatgatattatt |
47893521 |
T |
|
| Q |
226 |
catttctttctatatatagctagctagctacacgagtcacactgcaatcaattactcctctcactcactcatacaccattccttaatccatccgaaacca |
325 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
47893522 |
catttctttctatatatagc----tagctacacgagtcacactgcaatcaattactcctctcagtcactcatacaccattccttaatccatccgaaacca |
47893617 |
T |
|
| Q |
326 |
tgatcaaaattccaaaccttaaaatccctgagtggaacacaacacattacgaggaagtaccattctccaaccatttcatttcaaacgacatagacatagc |
425 |
Q |
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| T |
47893618 |
tgatcaaaattccaaaccttaaaatccctgagtggaacacaacacaatacgaggaagtaacattctccaaccatttcatttcaaacgacatagacataca |
47893717 |
T |
|
| Q |
426 |
cacttcatgcatgactgaagatttcgacttaccaatccatgttttctcaactgaccaattccgaatgttcgaattcaaggttcgaaaatgccaacgtggt |
525 |
Q |
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| T |
47893718 |
cacttcatgcatgactgaagatttcgacttaccaatccatgttttctcaactgaccaattccgaatgttcgaattcaaggttcgaaaatgccaacgtggt |
47893817 |
T |
|
| Q |
526 |
aggtcccatgactggacggactgtccatactctcatcccggcgaaaaagctcgccggagagaccctcaaaaatacaattattccggcaatccttgccctg |
625 |
Q |
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| T |
47893818 |
aggtcccatgactggacggactgtccatactctcatcccggtgaaaaagctcgccggagagaccctcaaaaatacaattattccggcaatccttgcccgg |
47893917 |
T |
|
| Q |
626 |
agtttcgcaaattaggaaactgcaccaaaggtgattcttgccacttcgctcatggtgtttttgaatgctggcttcatccttctcgttacagaactcagct |
725 |
Q |
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| T |
47893918 |
agtttcgcaaattaggaaactgcaccaaaggtgattcttgccacttcgctcatggtgtttttgaatgctggcttcatccttctcgttacagaactcagct |
47894017 |
T |
|
| Q |
726 |
ttgtaacgacggaaccctttgccggagacgagtttgtttctttgctcataccattgatcaactccgtgtctcagataacgct |
807 |
Q |
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| T |
47894018 |
ttgtaacgacggaaccctttgccggagacgagtttgtttctttgctcataccattgatcaactccgtgtctcaaataacgct |
47894099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 12 - 132
Target Start/End: Original strand, 47893258 - 47893378
Alignment:
| Q |
12 |
atgaagacaaaatggagggtggtttatcaattccatcaaaacaaagtcgacaaattggatatttaggagaagtttacaagatttgcatatatattgataa |
111 |
Q |
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| T |
47893258 |
atgaagacaaaatggagggtggtttatcaattccatcaaaacaaagtcgacaaattggatatttaggagaagtttacaagatttgcatatatattgataa |
47893357 |
T |
|
| Q |
112 |
gtttggcatttgcatttttag |
132 |
Q |
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| T |
47893358 |
gtttggcatttgcatttttag |
47893378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 484 - 741
Target Start/End: Complemental strand, 42926429 - 42926175
Alignment:
| Q |
484 |
ttccgaatgttcgaattcaaggttcgaaaatgccaacgtggtaggtcccatgactggacggactgtccatactctcatcccggcgaaaaagctcgccgga |
583 |
Q |
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| T |
42926429 |
ttccgcatgttcgagttcaagattcgtcgatgcgcacgtggcaggtctcatgactggacggagtgtcctttttctcatcccggcgagaaagctcgccgcc |
42926330 |
T |
|
| Q |
584 |
gagaccctcaaaaatacaattattccggcaatccttgccctgagtttcgcaaattaggaaactgcaccaaaggtgattcttgccacttcgctcatggtgt |
683 |
Q |
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| T |
42926329 |
gtgacccgagaaagtataactactccggcacttcatgtcctgattttcgtaa---aggaagttgcaagaaaggtgattcgtgtgagtttgctcatggtgt |
42926233 |
T |
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| Q |
684 |
ttttgaatgctggcttcatccttctcgttacagaactcagctttgtaacgacggaacc |
741 |
Q |
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||| || || |||||||||||||| |||||| | ||||||| ||||| ||||||||| |
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| T |
42926232 |
tttcgagtgttggcttcatccttcgcgttaccgtactcagccgtgtaaagacggaacc |
42926175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 670 - 720
Target Start/End: Complemental strand, 38748222 - 38748172
Alignment:
| Q |
670 |
ttcgctcatggtgtttttgaatgctggcttcatccttctcgttacagaact |
720 |
Q |
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||||||||||| |||||||||||||||||||||||| || | ||||||||| |
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| T |
38748222 |
ttcgctcatggcgtttttgaatgctggcttcatcctgctagatacagaact |
38748172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 519 - 581
Target Start/End: Original strand, 34340199 - 34340261
Alignment:
| Q |
519 |
acgtggtaggtcccatgactggacggactgtccatactctcatcccggcgaaaaagctcgccg |
581 |
Q |
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| T |
34340199 |
acgtggaagatcacatgactggacggagtgtccatacgcacatcccggcgagaaagcacgccg |
34340261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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